Wall clock time and date at job start Mon Mar 30 2020 01:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46900 * 2 1 4 4 C 1.52998 * 109.47088 * 119.99447 * 2 1 3 5 5 C 1.50699 * 109.47591 * 295.00649 * 4 2 1 6 6 H 1.08003 * 119.99591 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00204 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00318 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99889 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47290 * 89.99974 * 9 7 5 11 11 H 1.48498 * 109.46931 * 210.00083 * 9 7 5 12 12 H 1.48501 * 109.46965 * 329.99817 * 9 7 5 13 13 C 1.52998 * 109.47455 * 239.99779 * 2 1 3 14 14 N 1.46902 * 109.47001 * 64.99988 * 13 2 1 15 15 C 1.46904 * 111.00127 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.46960 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47353 * 304.99725 * 16 15 14 18 18 O 1.42894 * 109.47499 * 65.00165 * 16 15 14 19 19 C 1.50706 * 109.46831 * 185.00415 * 16 15 14 20 20 C 1.38237 * 119.99744 * 210.00383 * 19 16 15 21 21 C 1.38235 * 119.99712 * 180.02562 * 20 19 16 22 22 C 1.38234 * 120.00220 * 359.94731 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00223 * 30.01594 * 19 16 15 25 25 H 1.09006 * 109.46735 * 60.00246 * 1 2 3 26 26 H 1.08999 * 109.46988 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47245 * 300.00127 * 1 2 3 28 28 H 1.09002 * 109.46610 * 55.00448 * 4 2 1 29 29 H 1.09003 * 109.47164 * 175.00080 * 4 2 1 30 30 H 0.96992 * 120.00526 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.47349 * 305.00464 * 13 2 1 32 32 H 1.09002 * 109.47240 * 184.99874 * 13 2 1 33 33 H 1.00901 * 111.00407 * 303.95574 * 14 13 2 34 34 H 1.09007 * 109.46671 * 60.00222 * 15 14 13 35 35 H 1.08997 * 109.46837 * 300.00086 * 15 14 13 36 36 H 1.08993 * 109.47154 * 300.00362 * 17 16 15 37 37 H 1.09001 * 109.46664 * 60.00290 * 17 16 15 38 38 H 1.08998 * 109.47218 * 179.97438 * 17 16 15 39 39 H 0.96705 * 113.99982 * 59.99764 * 18 16 15 40 40 H 1.08005 * 120.00088 * 359.97438 * 20 19 16 41 41 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 43 43 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 44 44 H 1.07998 * 119.99975 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0804 0.9746 2.3756 7 6 1.9922 -0.4021 3.7284 8 7 1.6446 0.2773 4.7995 9 14 2.9615 -1.9895 3.9030 10 1 4.4151 -1.6870 3.8789 11 1 2.6131 -2.6431 5.1901 12 1 2.6266 -2.9001 2.7788 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1249 -0.6272 -3.6672 16 6 1.7026 0.1909 -4.8892 17 6 0.1881 0.4067 -4.8599 18 8 2.3647 1.4570 -4.8668 19 6 2.0799 -0.5513 -6.1453 20 6 2.3904 0.1499 -7.2955 21 6 2.7361 -0.5309 -8.4479 22 6 2.7722 -1.9127 -8.4498 23 6 2.4570 -2.6140 -7.3011 24 6 2.1153 -1.9332 -6.1475 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6053 -1.7197 1.2952 29 1 3.1263 -0.7993 1.2057 30 1 1.8912 -0.0459 5.6801 31 1 1.6054 -1.7198 -1.2951 32 1 3.1264 -0.7994 -1.2055 33 1 0.6529 0.1793 -2.4754 34 1 1.6904 -1.6250 -3.7296 35 1 3.2117 -0.7051 -3.6405 36 1 -0.3169 -0.5590 -4.8770 37 1 -0.0848 0.9435 -3.9513 38 1 -0.1126 0.9899 -5.7302 39 1 3.3297 1.3966 -4.8835 40 1 2.3622 1.2296 -7.2940 41 1 2.9783 0.0169 -9.3466 42 1 3.0426 -2.4445 -9.3501 43 1 2.4809 -3.6937 -7.3038 44 1 1.8721 -2.4810 -5.2491 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877039401.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:38 Heat of formation + Delta-G solvation = -38.746103 kcal Electronic energy + Delta-G solvation = -21282.987841 eV Core-core repulsion = 18199.522437 eV Total energy + Delta-G solvation = -3083.465404 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.19844 -37.85747 -36.45484 -33.95255 -32.50166 -31.62453 -31.12383 -29.46307 -27.66261 -26.41926 -24.85439 -23.19398 -22.52161 -21.67289 -20.27111 -19.00945 -17.82303 -16.97736 -16.51732 -15.97753 -15.19095 -15.04502 -14.77947 -14.62146 -14.20099 -13.92468 -13.60612 -13.36315 -12.96420 -12.69874 -12.66840 -12.52405 -12.28659 -11.99252 -11.89602 -11.74548 -11.67882 -11.35149 -11.00371 -10.85615 -10.67444 -10.42347 -10.14058 -9.89175 -9.64849 -9.41189 -9.19525 -9.05424 -8.99940 -8.49866 -8.16431 -6.00097 -3.96928 1.03934 1.12664 3.32480 3.39754 3.43115 3.49083 3.96806 4.23838 4.48276 4.58637 4.67405 4.73956 4.78102 4.86065 4.93632 5.19958 5.28541 5.33366 5.43960 5.53033 5.64496 5.66202 5.68901 5.70887 5.78223 5.82128 5.95919 6.05088 6.14751 6.19537 6.23770 6.31163 6.38450 6.47136 6.71406 6.78280 6.98732 7.07320 7.23633 7.31994 7.48964 7.56282 7.65472 7.84722 8.59601 9.05852 9.62793 11.13388 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032899 B = 0.003066 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.894073 B = 9131.254555 C = 9576.219894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 H 0.072 0.928 4 C -0.008 4.008 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.061 3.939 14 N -0.680 5.680 15 C 0.034 3.966 16 C 0.178 3.822 17 C -0.139 4.139 18 O -0.539 6.539 19 C -0.113 4.113 20 C -0.102 4.102 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.114 4.114 25 H 0.034 0.966 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.013 0.987 29 H 0.010 0.990 30 H 0.262 0.738 31 H 0.022 0.978 32 H 0.066 0.934 33 H 0.341 0.659 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.375 0.625 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.893 -4.384 -27.017 27.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.094 4.094 3 H 0.091 0.909 4 C -0.046 4.046 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.067 4.067 14 N -0.313 5.313 15 C -0.096 4.096 16 C 0.136 3.864 17 C -0.196 4.196 18 O -0.345 6.345 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.132 4.132 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.031 0.969 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.162 0.838 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.222 0.778 40 H 0.147 0.853 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.813 -3.742 -26.758 27.031 hybrid contribution 0.579 -1.971 0.150 2.060 sum 1.392 -5.714 -26.608 27.250 Atomic orbital electron populations 1.21749 0.96256 1.00440 1.00851 1.21023 0.95215 1.00257 0.92919 0.90945 1.19603 0.95568 0.96008 0.93452 1.21139 1.35316 1.09479 0.89078 0.90792 1.25032 0.95719 0.96898 0.95971 1.69913 1.47287 1.39272 0.97997 0.86803 0.80675 0.84532 0.77385 1.20376 1.21522 1.19162 1.22181 1.00250 0.94372 0.89924 1.60514 1.20034 1.50057 1.00724 1.22681 1.00995 0.95308 0.90601 1.19924 0.93740 0.83353 0.89376 1.21759 0.91939 1.02327 1.03614 1.86565 1.23363 1.27881 1.96643 1.20614 1.00316 0.94151 0.96339 1.21044 0.98434 1.00533 0.92031 1.21175 1.00252 0.94449 0.98194 1.21186 1.00119 0.94466 0.98240 1.21163 0.99793 0.99925 0.93076 1.21196 0.99679 0.93799 0.98489 0.94751 0.94124 0.91270 0.96854 0.97154 0.92845 0.95993 0.91597 0.83844 0.94554 0.90782 0.91437 0.90535 0.91699 0.77751 0.85307 0.86077 0.86223 0.86068 0.85715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.77 37.16 0.33 -2.18 16 2 C -0.08 -1.49 2.54 -90.62 -0.23 -1.72 16 3 H 0.07 1.54 8.14 -51.92 -0.42 1.12 16 4 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 5 C -0.51 -14.55 8.96 -34.44 -0.31 -14.86 16 6 H 0.07 2.26 7.30 -52.48 -0.38 1.87 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.12 13.96 55.43 0.77 -27.35 16 9 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 13 C 0.06 1.01 5.14 -3.82 -0.02 0.99 16 14 N -0.68 -9.61 6.37 -113.78 -0.72 -10.34 16 15 C 0.03 0.39 4.37 -3.82 -0.02 0.38 16 16 C 0.18 1.87 1.01 -91.77 -0.09 1.78 16 17 C -0.14 -1.43 8.37 37.16 0.31 -1.12 16 18 O -0.54 -6.15 11.91 -35.23 -0.42 -6.57 16 19 C -0.11 -1.11 4.81 -104.62 -0.50 -1.61 16 20 C -0.10 -0.94 9.35 -39.58 -0.37 -1.31 16 21 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 22 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 23 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 24 C -0.11 -1.06 9.14 -39.58 -0.36 -1.42 16 25 H 0.03 0.53 6.68 -51.93 -0.35 0.19 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.07 1.44 6.95 -51.93 -0.36 1.08 16 28 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 29 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.34 4.65 4.87 -39.29 -0.19 4.46 16 34 H 0.04 0.40 6.22 -51.93 -0.32 0.08 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.85 6.51 -51.93 -0.34 0.51 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.38 3.35 9.04 45.56 0.41 3.76 16 40 H 0.13 1.12 7.49 -52.48 -0.39 0.73 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.13 1.08 6.05 -52.49 -0.32 0.77 16 LS Contribution 347.40 15.07 5.24 5.24 Total: -1.00 -31.53 347.40 -8.86 -40.39 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.40 Total: 5.14 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -2.65 Total: -23.76 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.05 Total: -37.69 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.42 Total: -6.57 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.53 -8.86 -40.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877039401.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.649 kcal (2) G-P(sol) polarization free energy of solvation -31.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds