Wall clock time and date at job start Mon Mar 30 2020 01:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46900 * 2 1 4 4 C 1.52998 * 109.47088 * 119.99447 * 2 1 3 5 5 C 1.50699 * 109.47591 * 295.00649 * 4 2 1 6 6 H 1.08003 * 119.99591 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00204 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00318 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99889 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47290 * 89.99974 * 9 7 5 11 11 H 1.48498 * 109.46931 * 210.00083 * 9 7 5 12 12 H 1.48501 * 109.46965 * 329.99817 * 9 7 5 13 13 C 1.52998 * 109.47455 * 239.99779 * 2 1 3 14 14 N 1.46902 * 109.47001 * 64.99988 * 13 2 1 15 15 C 1.46904 * 111.00127 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.46960 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47353 * 304.99725 * 16 15 14 18 18 O 1.42894 * 109.47499 * 65.00165 * 16 15 14 19 19 C 1.50706 * 109.46831 * 185.00415 * 16 15 14 20 20 C 1.38237 * 119.99744 * 210.00383 * 19 16 15 21 21 C 1.38235 * 119.99712 * 180.02562 * 20 19 16 22 22 C 1.38234 * 120.00220 * 359.94731 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00223 * 30.01594 * 19 16 15 25 25 H 1.09006 * 109.46735 * 60.00246 * 1 2 3 26 26 H 1.08999 * 109.46988 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47245 * 300.00127 * 1 2 3 28 28 H 1.09002 * 109.46610 * 55.00448 * 4 2 1 29 29 H 1.09003 * 109.47164 * 175.00080 * 4 2 1 30 30 H 0.96992 * 120.00526 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.47349 * 305.00464 * 13 2 1 32 32 H 1.09002 * 109.47240 * 184.99874 * 13 2 1 33 33 H 1.00901 * 111.00407 * 303.95574 * 14 13 2 34 34 H 1.09007 * 109.46671 * 60.00222 * 15 14 13 35 35 H 1.08997 * 109.46837 * 300.00086 * 15 14 13 36 36 H 1.08993 * 109.47154 * 300.00362 * 17 16 15 37 37 H 1.09001 * 109.46664 * 60.00290 * 17 16 15 38 38 H 1.08998 * 109.47218 * 179.97438 * 17 16 15 39 39 H 0.96705 * 113.99982 * 59.99764 * 18 16 15 40 40 H 1.08005 * 120.00088 * 359.97438 * 20 19 16 41 41 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 43 43 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 44 44 H 1.07998 * 119.99975 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0804 0.9746 2.3756 7 6 1.9922 -0.4021 3.7284 8 7 1.6446 0.2773 4.7995 9 14 2.9615 -1.9895 3.9030 10 1 4.4151 -1.6870 3.8789 11 1 2.6131 -2.6431 5.1901 12 1 2.6266 -2.9001 2.7788 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1249 -0.6272 -3.6672 16 6 1.7026 0.1909 -4.8892 17 6 0.1881 0.4067 -4.8599 18 8 2.3647 1.4570 -4.8668 19 6 2.0799 -0.5513 -6.1453 20 6 2.3904 0.1499 -7.2955 21 6 2.7361 -0.5309 -8.4479 22 6 2.7722 -1.9127 -8.4498 23 6 2.4570 -2.6140 -7.3011 24 6 2.1153 -1.9332 -6.1475 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6053 -1.7197 1.2952 29 1 3.1263 -0.7993 1.2057 30 1 1.8912 -0.0459 5.6801 31 1 1.6054 -1.7198 -1.2951 32 1 3.1264 -0.7994 -1.2055 33 1 0.6529 0.1793 -2.4754 34 1 1.6904 -1.6250 -3.7296 35 1 3.2117 -0.7051 -3.6405 36 1 -0.3169 -0.5590 -4.8770 37 1 -0.0848 0.9435 -3.9513 38 1 -0.1126 0.9899 -5.7302 39 1 3.3297 1.3966 -4.8835 40 1 2.3622 1.2296 -7.2940 41 1 2.9783 0.0169 -9.3466 42 1 3.0426 -2.4445 -9.3501 43 1 2.4809 -3.6937 -7.3038 44 1 1.8721 -2.4810 -5.2491 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877039401.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:38 Heat of formation + Delta-G solvation = -59.776273 kcal Electronic energy + Delta-G solvation = -21283.899778 eV Core-core repulsion = 18199.522437 eV Total energy + Delta-G solvation = -3084.377341 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.92431 -38.79786 -37.70653 -35.40715 -34.10590 -32.85712 -31.75420 -30.30843 -29.42415 -27.59335 -26.16439 -24.15217 -23.59073 -22.84144 -21.12071 -20.58498 -18.97354 -18.55830 -17.47605 -16.98098 -16.39090 -16.04775 -15.85776 -15.64979 -15.40662 -15.19842 -14.83321 -14.36242 -14.27851 -14.04732 -13.70238 -13.55264 -13.47921 -13.28858 -13.01869 -12.89929 -12.82850 -12.49439 -12.39363 -12.09990 -12.00590 -11.75374 -11.63101 -11.44696 -11.34848 -11.09383 -10.76477 -10.72947 -9.82287 -9.67822 -9.26007 -8.25469 -6.27920 0.40162 0.49850 1.36301 1.37700 1.49533 2.38117 2.85433 3.06282 3.09665 3.43204 3.76956 3.85788 3.98051 4.14697 4.16724 4.21046 4.24517 4.29699 4.40663 4.55789 4.62456 4.68863 4.74699 4.79053 4.83127 4.89423 4.93942 4.99812 5.05426 5.10632 5.16794 5.24463 5.29500 5.36815 5.54568 5.57661 5.62940 5.65203 5.70362 5.73531 6.10402 6.11056 6.35474 6.48197 6.79799 6.87163 7.35524 8.91413 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032899 B = 0.003066 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.894073 B = 9131.254555 C = 9576.219894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 H 0.050 0.950 4 C -0.006 4.006 5 C -0.519 4.519 6 H 0.033 0.967 7 C 0.000 4.000 8 N -0.955 5.955 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.246 1.246 13 C 0.075 3.925 14 N -0.687 5.687 15 C 0.037 3.963 16 C 0.183 3.817 17 C -0.140 4.140 18 O -0.555 6.555 19 C -0.122 4.122 20 C -0.113 4.113 21 C -0.128 4.128 22 C -0.126 4.126 23 C -0.128 4.128 24 C -0.125 4.125 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.034 0.966 28 H 0.019 0.981 29 H 0.014 0.986 30 H 0.264 0.736 31 H 0.033 0.967 32 H 0.065 0.935 33 H 0.344 0.656 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.384 0.616 40 H 0.128 0.872 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.678 -6.591 -29.410 30.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.044 4.044 5 C -0.557 4.557 6 H 0.052 0.948 7 C -0.196 4.196 8 N -0.596 5.596 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.169 1.169 13 C -0.055 4.055 14 N -0.321 5.321 15 C -0.092 4.092 16 C 0.141 3.859 17 C -0.198 4.198 18 O -0.362 6.362 19 C -0.123 4.123 20 C -0.131 4.131 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.143 4.143 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.165 0.835 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.232 0.768 40 H 0.146 0.854 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.157 0.843 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.598 -5.946 -29.182 29.824 hybrid contribution 0.297 -1.187 0.838 1.483 sum 1.895 -7.133 -28.344 29.289 Atomic orbital electron populations 1.21660 0.95372 1.01013 1.00609 1.20885 0.95984 0.98976 0.93209 0.93130 1.19556 0.95797 0.95829 0.93184 1.21460 1.34365 1.08578 0.91278 0.94822 1.26022 0.97070 1.01018 0.95511 1.70075 1.49186 1.41621 0.98717 0.85669 0.79131 0.79868 0.78016 1.19389 1.21197 1.16925 1.21904 1.00079 0.94389 0.89080 1.60436 1.20376 1.50304 1.00959 1.22710 1.00969 0.95875 0.89683 1.19861 0.93672 0.82944 0.89397 1.21782 0.92067 1.02842 1.03065 1.86539 1.24294 1.28654 1.96689 1.20530 1.01266 0.94406 0.96058 1.21136 0.98921 1.00647 0.92424 1.21448 0.99683 0.94910 0.98507 1.21510 0.99339 0.94527 0.98978 1.21445 0.99280 1.00987 0.92892 1.21323 1.00128 0.93665 0.99175 0.91864 0.93060 0.94656 0.96253 0.96729 0.92690 0.94886 0.91648 0.83513 0.93310 0.90824 0.90298 0.91523 0.91718 0.76757 0.85431 0.84265 0.84058 0.84334 0.85310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 8.77 71.98 0.63 -4.07 16 2 C -0.07 -2.80 2.54 -10.80 -0.03 -2.83 16 3 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 4 C -0.01 -0.27 3.52 29.85 0.10 -0.17 16 5 C -0.52 -30.19 8.96 25.60 0.23 -29.96 16 6 H 0.03 2.16 7.30 -2.91 -0.02 2.14 16 7 C 0.00 -0.02 5.47 84.65 0.46 0.45 16 8 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 9 Si 0.95 44.84 27.47 68.60 1.88 46.73 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 13 C 0.07 2.29 5.14 86.30 0.44 2.74 16 14 N -0.69 -18.22 6.37 -513.88 -3.27 -21.49 16 15 C 0.04 0.78 4.37 86.30 0.38 1.16 16 16 C 0.18 3.58 1.01 -11.54 -0.01 3.56 16 17 C -0.14 -2.69 8.37 71.98 0.60 -2.09 16 18 O -0.56 -12.14 11.91 -148.98 -1.77 -13.92 16 19 C -0.12 -2.18 4.81 -19.86 -0.10 -2.27 16 20 C -0.11 -1.91 9.35 22.27 0.21 -1.70 16 21 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 22 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 23 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 24 C -0.12 -2.07 9.14 22.27 0.20 -1.86 16 25 H 0.06 1.91 6.68 -2.38 -0.02 1.89 16 26 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.03 1.50 6.95 -2.39 -0.02 1.48 16 28 H 0.02 0.88 7.20 -2.39 -0.02 0.87 16 29 H 0.01 0.67 7.57 -2.39 -0.02 0.65 16 30 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 31 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.34 8.75 4.87 -89.69 -0.44 8.31 16 34 H 0.05 0.93 6.22 -2.38 -0.01 0.92 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.40 6.51 -2.39 -0.02 1.38 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.38 6.53 9.04 -74.05 -0.67 5.86 16 40 H 0.13 2.11 7.49 -2.91 -0.02 2.09 16 41 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 42 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 43 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 44 H 0.13 1.94 6.05 -2.91 -0.02 1.92 16 Total: -1.00 -68.63 347.40 0.76 -67.87 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: -0.18 Total: 23.12 kcal Atomic # 6 Polarization: -45.48 SS G_CDS: 3.80 Total: -41.68 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -2.98 Total: -82.12 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -1.77 Total: -13.92 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.73 kcal Total: -68.63 0.76 -67.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877039401.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.097 kcal (2) G-P(sol) polarization free energy of solvation -68.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds