Wall clock time and date at job start Mon Mar 30 2020 02:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38003 * 119.50747 * 2 1 4 4 C 1.38839 * 119.38796 * 179.74753 * 3 2 1 5 5 C 1.38863 * 118.43267 * 0.50024 * 4 3 2 6 6 N 1.40009 * 120.50602 * 179.76019 * 5 4 3 7 7 C 1.46500 * 120.00365 * 354.21287 * 6 5 4 8 8 C 1.52998 * 109.47334 * 180.02562 * 7 6 5 9 9 H 1.08993 * 109.47753 * 54.99759 * 8 7 6 10 10 C 1.53007 * 109.47023 * 294.99686 * 8 7 6 11 11 C 1.53001 * 109.47195 * 175.00179 * 8 7 6 12 12 C 1.50701 * 109.46886 * 184.99607 * 11 8 7 13 13 H 1.07996 * 120.00425 * 359.97438 * 12 11 8 14 14 C 1.37885 * 119.99723 * 179.97438 * 12 11 8 15 15 N 1.31506 * 119.99723 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99826 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47088 * 90.00326 * 16 14 12 18 18 H 1.48500 * 109.47175 * 210.00278 * 16 14 12 19 19 H 1.48498 * 109.47355 * 330.00608 * 16 14 12 20 20 C 1.39710 * 118.97792 * 359.48082 * 5 4 3 21 21 N 1.39292 * 119.74248 * 180.25451 * 20 5 4 22 22 C 1.46900 * 110.99694 * 119.86174 * 21 20 5 23 23 C 1.46898 * 110.99807 * 243.81085 * 21 20 5 24 24 N 1.32044 * 119.49989 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47057 * 270.01899 * 1 2 3 26 26 H 1.08995 * 109.47210 * 30.01594 * 1 2 3 27 27 H 1.08992 * 109.47386 * 150.02263 * 1 2 3 28 28 H 1.08010 * 120.30644 * 0.02562 * 3 2 1 29 29 H 1.07990 * 120.78259 * 180.25367 * 4 3 2 30 30 H 0.97006 * 120.00344 * 174.21716 * 6 5 4 31 31 H 1.09005 * 109.47067 * 300.00026 * 7 6 5 32 32 H 1.08997 * 109.46996 * 60.00203 * 7 6 5 33 33 H 1.09003 * 109.46655 * 60.00216 * 10 8 7 34 34 H 1.09000 * 109.47207 * 179.97438 * 10 8 7 35 35 H 1.08996 * 109.47421 * 300.00558 * 10 8 7 36 36 H 1.08998 * 109.47215 * 304.99608 * 11 8 7 37 37 H 1.08997 * 109.47203 * 64.99558 * 11 8 7 38 38 H 0.97003 * 119.99958 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.47454 * 63.95225 * 22 21 20 40 40 H 1.09000 * 109.47228 * 183.95489 * 22 21 20 41 41 H 1.09007 * 109.47257 * 303.95124 * 22 21 20 42 42 H 1.09000 * 109.46903 * 59.46473 * 23 21 20 43 43 H 1.08998 * 109.46816 * 179.45948 * 23 21 20 44 44 H 1.08993 * 109.47256 * 299.46257 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1868 1.2010 0.0000 4 6 3.5751 1.1981 0.0053 5 6 4.2338 -0.0243 -0.0002 6 7 5.6328 -0.0779 -0.0002 7 6 6.4132 1.1560 -0.1223 8 6 7.9056 0.8203 -0.0960 9 1 8.1270 0.0875 -0.8719 10 6 8.2743 0.2420 1.2717 11 6 8.7188 2.0915 -0.3482 12 6 10.1814 1.7413 -0.4444 13 1 10.4993 0.7149 -0.3361 14 6 11.1139 2.7315 -0.6707 15 7 10.7270 3.9815 -0.8021 16 14 12.9268 2.2974 -0.7907 17 1 13.2710 1.9952 -2.2032 18 1 13.7428 3.4441 -0.3169 19 1 13.2078 1.1079 0.0526 20 6 3.4789 -1.1999 0.0003 21 7 4.1231 -2.4349 0.0002 22 6 3.7616 -3.2172 1.1898 23 6 3.8295 -3.1817 -1.2302 24 7 2.1572 -1.1493 0.0005 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3634 -0.8901 -0.5134 28 1 1.6437 2.1347 0.0004 29 1 4.1297 2.1247 0.0096 30 1 6.0856 -0.9320 0.0807 31 1 6.1685 1.6490 -1.0632 32 1 6.1751 1.8201 0.7085 33 1 7.6949 -0.6636 1.4513 34 1 9.3375 0.0024 1.2903 35 1 8.0529 0.9748 2.0477 36 1 8.3934 2.5520 -1.2810 37 1 8.5658 2.7899 0.4745 38 1 11.3830 4.6782 -0.9609 39 1 2.6959 -3.4449 1.1650 40 1 4.3315 -4.1464 1.2006 41 1 3.9893 -2.6410 2.0867 42 1 4.1622 -2.6051 -2.0933 43 1 4.3525 -4.1377 -1.2085 44 1 2.7560 -3.3564 -1.3018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877122629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:45 Heat of formation + Delta-G solvation = 27.275968 kcal Electronic energy + Delta-G solvation = -21484.281413 eV Core-core repulsion = 18435.971692 eV Total energy + Delta-G solvation = -3048.309721 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.52635 -37.06170 -36.88462 -34.38387 -32.31587 -31.35765 -30.72434 -27.62991 -27.56777 -26.76112 -25.32015 -24.65372 -23.01570 -21.45397 -21.13883 -19.34248 -17.21224 -16.95223 -16.43715 -15.92806 -15.39972 -14.63593 -14.50729 -14.40677 -14.20959 -13.97390 -13.80641 -13.22238 -12.91374 -12.57400 -12.49258 -12.39863 -12.21730 -12.15714 -11.90329 -11.79781 -11.74768 -11.54490 -10.94284 -10.92288 -10.42836 -10.37719 -10.20739 -9.79834 -9.65064 -9.31023 -9.28025 -9.06954 -8.67211 -8.38610 -7.16837 -6.03283 -4.04953 1.24766 1.57875 3.29940 3.36616 3.39306 3.69735 3.70661 3.85802 4.43701 4.55381 4.90011 5.09426 5.10869 5.32794 5.33253 5.34386 5.44175 5.45571 5.51484 5.56884 5.62162 5.63855 5.68385 5.82348 5.83629 5.88545 5.92470 6.07917 6.17256 6.28596 6.35967 6.41899 6.59199 6.77274 6.82402 6.99874 7.02752 7.16161 7.57809 7.60287 7.73897 7.95414 8.02069 8.13906 8.38096 9.00736 9.58894 11.08157 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026534 B = 0.003479 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.015085 B = 8046.641899 C = 8768.768736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.055 3.945 3 C -0.117 4.117 4 C -0.161 4.161 5 C 0.207 3.793 6 N -0.719 5.719 7 C 0.122 3.878 8 C -0.095 4.095 9 H 0.063 0.937 10 C -0.132 4.132 11 C 0.031 3.969 12 C -0.516 4.516 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.206 3.794 21 N -0.486 5.486 22 C 0.032 3.968 23 C 0.032 3.968 24 N -0.471 5.471 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.130 0.870 29 H 0.137 0.863 30 H 0.409 0.591 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.032 0.968 34 H 0.063 0.937 35 H 0.045 0.955 36 H 0.017 0.983 37 H 0.018 0.982 38 H 0.260 0.740 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.717 -9.739 2.200 20.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.138 4.138 4 C -0.193 4.193 5 C 0.095 3.905 6 N -0.346 5.346 7 C -0.001 4.001 8 C -0.114 4.114 9 H 0.081 0.919 10 C -0.189 4.189 11 C -0.007 4.007 12 C -0.554 4.554 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.029 4.029 21 N -0.208 5.208 22 C -0.116 4.116 23 C -0.116 4.116 24 N -0.183 5.183 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.148 0.852 29 H 0.155 0.845 30 H 0.247 0.753 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -17.464 -10.079 2.172 20.280 hybrid contribution 0.917 0.262 -0.093 0.958 sum -16.547 -9.817 2.079 19.352 Atomic orbital electron populations 1.20499 0.89549 1.02522 1.02105 1.20587 0.96187 0.87836 1.03943 1.21675 0.93969 0.98806 0.99333 1.21099 0.94378 0.96881 1.06901 1.18501 0.85471 0.92746 0.93754 1.45041 1.01245 1.10396 1.77871 1.21703 0.92332 0.85753 1.00337 1.21426 0.91175 1.01328 0.97433 0.91868 1.21719 1.01714 0.98710 0.96784 1.19078 0.93953 0.90616 0.97043 1.21195 0.91666 0.93728 1.48832 0.92516 1.25011 0.98955 0.95046 0.95437 1.69955 1.34073 0.99886 1.49554 0.86614 0.85262 0.77965 0.78292 1.20703 1.21268 1.19886 1.19161 0.86734 0.90109 1.06896 1.60000 1.54880 1.02066 1.03888 1.22346 0.99656 0.97546 0.92010 1.22355 0.99942 0.97969 0.91290 1.67221 1.09287 1.30532 1.11213 0.91539 0.91388 0.91468 0.85213 0.84521 0.75342 0.92509 0.92594 0.94905 0.91759 0.93563 0.96490 0.96331 0.93000 0.94290 0.91147 0.91711 0.91562 0.91120 0.94337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 10.16 36.01 0.37 -0.46 16 2 C 0.06 0.70 6.78 -82.59 -0.56 0.14 16 3 C -0.12 -1.42 9.72 -39.45 -0.38 -1.80 16 4 C -0.16 -2.20 9.42 -39.13 -0.37 -2.57 16 5 C 0.21 3.06 6.69 -83.34 -0.56 2.51 16 6 N -0.72 -10.82 5.45 -58.34 -0.32 -11.14 16 7 C 0.12 2.02 4.39 -4.04 -0.02 2.00 16 8 C -0.09 -1.82 2.37 -90.62 -0.22 -2.04 16 9 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 10 C -0.13 -2.38 8.88 37.16 0.33 -2.05 16 11 C 0.03 0.75 4.45 -27.88 -0.12 0.63 16 12 C -0.52 -14.01 8.41 -34.44 -0.29 -14.30 16 13 H 0.06 1.50 7.05 -52.49 -0.37 1.13 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 16 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 20 C 0.21 2.98 5.36 -154.64 -0.83 2.15 16 21 N -0.49 -6.26 4.19 -188.73 -0.79 -7.04 16 22 C 0.03 0.36 9.40 60.06 0.56 0.92 16 23 C 0.03 0.36 9.46 60.06 0.57 0.93 16 24 N -0.47 -6.70 9.53 -8.47 -0.08 -6.78 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.50 8.07 -51.93 -0.42 0.09 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 29 H 0.14 1.77 6.87 -52.49 -0.36 1.41 16 30 H 0.41 6.12 6.98 -40.82 -0.28 5.83 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.92 7.78 -51.93 -0.40 0.51 16 33 H 0.03 0.51 7.18 -51.93 -0.37 0.14 16 34 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.04 0.45 7.96 -51.93 -0.41 0.03 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.75 8.12 -51.92 -0.42 0.33 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.04 0.45 7.93 -51.93 -0.41 0.04 16 LS Contribution 356.94 15.07 5.38 5.38 Total: -1.00 -29.63 356.94 -9.31 -38.94 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.60 Total: 2.42 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -1.61 Total: -12.45 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.45 Total: -50.58 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.63 -9.31 -38.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877122629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.215 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds