Wall clock time and date at job start Mon Mar 30 2020 02:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38003 * 119.50747 * 2 1 4 4 C 1.38839 * 119.38796 * 179.74753 * 3 2 1 5 5 C 1.38863 * 118.43267 * 0.50024 * 4 3 2 6 6 N 1.40009 * 120.50602 * 179.76019 * 5 4 3 7 7 C 1.46500 * 120.00365 * 354.21287 * 6 5 4 8 8 C 1.52998 * 109.47334 * 180.02562 * 7 6 5 9 9 H 1.08993 * 109.47753 * 54.99759 * 8 7 6 10 10 C 1.53007 * 109.47023 * 294.99686 * 8 7 6 11 11 C 1.53001 * 109.47195 * 175.00179 * 8 7 6 12 12 C 1.50701 * 109.46886 * 184.99607 * 11 8 7 13 13 H 1.07996 * 120.00425 * 359.97438 * 12 11 8 14 14 C 1.37885 * 119.99723 * 179.97438 * 12 11 8 15 15 N 1.31506 * 119.99723 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99826 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47088 * 90.00326 * 16 14 12 18 18 H 1.48500 * 109.47175 * 210.00278 * 16 14 12 19 19 H 1.48498 * 109.47355 * 330.00608 * 16 14 12 20 20 C 1.39710 * 118.97792 * 359.48082 * 5 4 3 21 21 N 1.39292 * 119.74248 * 180.25451 * 20 5 4 22 22 C 1.46900 * 110.99694 * 119.86174 * 21 20 5 23 23 C 1.46898 * 110.99807 * 243.81085 * 21 20 5 24 24 N 1.32044 * 119.49989 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47057 * 270.01899 * 1 2 3 26 26 H 1.08995 * 109.47210 * 30.01594 * 1 2 3 27 27 H 1.08992 * 109.47386 * 150.02263 * 1 2 3 28 28 H 1.08010 * 120.30644 * 0.02562 * 3 2 1 29 29 H 1.07990 * 120.78259 * 180.25367 * 4 3 2 30 30 H 0.97006 * 120.00344 * 174.21716 * 6 5 4 31 31 H 1.09005 * 109.47067 * 300.00026 * 7 6 5 32 32 H 1.08997 * 109.46996 * 60.00203 * 7 6 5 33 33 H 1.09003 * 109.46655 * 60.00216 * 10 8 7 34 34 H 1.09000 * 109.47207 * 179.97438 * 10 8 7 35 35 H 1.08996 * 109.47421 * 300.00558 * 10 8 7 36 36 H 1.08998 * 109.47215 * 304.99608 * 11 8 7 37 37 H 1.08997 * 109.47203 * 64.99558 * 11 8 7 38 38 H 0.97003 * 119.99958 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.47454 * 63.95225 * 22 21 20 40 40 H 1.09000 * 109.47228 * 183.95489 * 22 21 20 41 41 H 1.09007 * 109.47257 * 303.95124 * 22 21 20 42 42 H 1.09000 * 109.46903 * 59.46473 * 23 21 20 43 43 H 1.08998 * 109.46816 * 179.45948 * 23 21 20 44 44 H 1.08993 * 109.47256 * 299.46257 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1868 1.2010 0.0000 4 6 3.5751 1.1981 0.0053 5 6 4.2338 -0.0243 -0.0002 6 7 5.6328 -0.0779 -0.0002 7 6 6.4132 1.1560 -0.1223 8 6 7.9056 0.8203 -0.0960 9 1 8.1270 0.0875 -0.8719 10 6 8.2743 0.2420 1.2717 11 6 8.7188 2.0915 -0.3482 12 6 10.1814 1.7413 -0.4444 13 1 10.4993 0.7149 -0.3361 14 6 11.1139 2.7315 -0.6707 15 7 10.7270 3.9815 -0.8021 16 14 12.9268 2.2974 -0.7907 17 1 13.2710 1.9952 -2.2032 18 1 13.7428 3.4441 -0.3169 19 1 13.2078 1.1079 0.0526 20 6 3.4789 -1.1999 0.0003 21 7 4.1231 -2.4349 0.0002 22 6 3.7616 -3.2172 1.1898 23 6 3.8295 -3.1817 -1.2302 24 7 2.1572 -1.1493 0.0005 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3634 -0.8901 -0.5134 28 1 1.6437 2.1347 0.0004 29 1 4.1297 2.1247 0.0096 30 1 6.0856 -0.9320 0.0807 31 1 6.1685 1.6490 -1.0632 32 1 6.1751 1.8201 0.7085 33 1 7.6949 -0.6636 1.4513 34 1 9.3375 0.0024 1.2903 35 1 8.0529 0.9748 2.0477 36 1 8.3934 2.5520 -1.2810 37 1 8.5658 2.7899 0.4745 38 1 11.3830 4.6782 -0.9609 39 1 2.6959 -3.4449 1.1650 40 1 4.3315 -4.1464 1.2006 41 1 3.9893 -2.6410 2.0867 42 1 4.1622 -2.6051 -2.0933 43 1 4.3525 -4.1377 -1.2085 44 1 2.7560 -3.3564 -1.3018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877122629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:45 Heat of formation + Delta-G solvation = 10.426980 kcal Electronic energy + Delta-G solvation = -21485.012040 eV Core-core repulsion = 18435.971692 eV Total energy + Delta-G solvation = -3049.040348 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.54418 -38.44812 -37.83184 -35.91165 -34.17040 -32.33497 -31.86972 -29.10704 -28.51199 -28.22014 -26.63607 -25.63975 -24.72727 -22.59291 -22.18217 -20.87901 -18.60323 -18.27844 -17.92145 -17.03532 -16.49969 -16.40271 -15.95061 -15.54767 -15.21406 -14.90781 -14.88024 -14.60463 -14.32303 -14.01074 -13.83043 -13.39210 -13.31103 -13.28644 -12.98261 -12.95989 -12.80384 -12.70331 -12.67293 -12.62664 -12.25602 -12.02425 -11.73170 -11.21883 -11.15598 -11.04091 -10.59640 -10.52906 -10.30558 -9.63776 -8.27992 -8.17293 -6.25881 0.23625 0.53294 1.41695 1.41806 1.52673 2.40430 2.52819 2.76136 2.84834 3.16947 3.63519 3.96276 4.03662 4.16022 4.16663 4.21634 4.36742 4.42342 4.44208 4.53605 4.62428 4.71692 4.76631 4.79214 4.85881 4.88644 4.93108 4.94750 4.95592 5.09762 5.13704 5.22183 5.31519 5.32389 5.45707 5.52836 5.65857 5.77377 5.87221 5.87371 6.04491 6.28513 6.49091 6.85730 6.90165 7.12174 7.42365 8.94651 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026534 B = 0.003479 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.015085 B = 8046.641899 C = 8768.768736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.050 3.950 3 C -0.117 4.117 4 C -0.170 4.170 5 C 0.185 3.815 6 N -0.719 5.719 7 C 0.140 3.860 8 C -0.084 4.084 9 H 0.061 0.939 10 C -0.123 4.123 11 C 0.036 3.964 12 C -0.529 4.529 13 H 0.062 0.938 14 C 0.000 4.000 15 N -0.933 5.933 16 Si 0.958 3.042 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.263 1.263 20 C 0.199 3.801 21 N -0.494 5.494 22 C 0.036 3.964 23 C 0.036 3.964 24 N -0.487 5.487 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.160 0.840 29 H 0.139 0.861 30 H 0.410 0.590 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.042 0.958 36 H -0.009 1.009 37 H -0.004 1.004 38 H 0.262 0.738 39 H 0.033 0.967 40 H 0.091 0.909 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.091 0.909 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.470 -10.874 2.502 21.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.137 4.137 4 C -0.201 4.201 5 C 0.075 3.925 6 N -0.347 5.347 7 C 0.015 3.985 8 C -0.102 4.102 9 H 0.079 0.921 10 C -0.181 4.181 11 C -0.002 4.002 12 C -0.568 4.568 13 H 0.080 0.920 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.784 3.216 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.187 1.187 20 C -0.036 4.036 21 N -0.217 5.217 22 C -0.111 4.111 23 C -0.111 4.111 24 N -0.199 5.199 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.083 0.917 28 H 0.178 0.822 29 H 0.157 0.843 30 H 0.247 0.753 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.010 0.990 37 H 0.014 0.986 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -18.242 -11.240 2.477 21.570 hybrid contribution 1.025 0.627 -0.192 1.217 sum -17.217 -10.613 2.285 20.354 Atomic orbital electron populations 1.20578 0.87128 1.03541 1.03120 1.21251 0.97906 0.87644 1.02329 1.22006 0.93414 1.00026 0.98214 1.21322 0.95362 0.96687 1.06718 1.18666 0.85163 0.93522 0.95120 1.44753 1.01400 1.09501 1.79075 1.21326 0.90638 0.86422 1.00065 1.21184 0.92308 0.98568 0.98187 0.92103 1.21617 1.01074 0.99709 0.95675 1.18946 0.93979 0.92454 0.94806 1.21621 0.93061 0.93979 1.48091 0.92001 1.25902 1.03737 0.94939 0.95196 1.70085 1.35612 1.00954 1.50759 0.85543 0.79592 0.77954 0.78554 1.20059 1.21050 1.18745 1.19348 0.86968 0.90624 1.06676 1.60038 1.54903 1.02004 1.04788 1.22343 0.99644 0.98019 0.91097 1.22344 0.99798 0.98548 0.90427 1.67318 1.09227 1.31420 1.11963 0.90411 0.89140 0.91706 0.82223 0.84310 0.75304 0.93204 0.92552 0.92130 0.93325 0.93877 0.99020 0.98585 0.92938 0.94834 0.89076 0.92448 0.92553 0.89016 0.94911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.38 10.16 71.24 0.72 -0.66 16 2 C 0.05 1.17 6.78 42.47 0.29 1.45 16 3 C -0.12 -2.59 9.72 22.36 0.22 -2.37 16 4 C -0.17 -4.48 9.42 22.56 0.21 -4.27 16 5 C 0.19 5.37 6.69 38.34 0.26 5.63 16 6 N -0.72 -21.26 5.45 -338.48 -1.84 -23.11 16 7 C 0.14 4.62 4.39 86.38 0.38 5.00 16 8 C -0.08 -3.23 2.37 -10.79 -0.03 -3.26 16 9 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 10 C -0.12 -4.37 8.88 71.98 0.64 -3.73 16 11 C 0.04 1.80 4.45 29.85 0.13 1.93 16 12 C -0.53 -29.05 8.41 25.60 0.22 -28.83 16 13 H 0.06 3.26 7.05 -2.91 -0.02 3.24 16 14 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 15 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16 16 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 20 C 0.20 5.57 5.36 133.15 0.71 6.29 16 21 N -0.49 -12.21 4.19 -751.01 -3.14 -15.35 16 22 C 0.04 0.76 9.40 127.69 1.20 1.96 16 23 C 0.04 0.78 9.46 127.69 1.21 1.99 16 24 N -0.49 -13.33 9.53 -180.72 -1.72 -15.05 16 25 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.09 1.04 8.07 -2.39 -0.02 1.02 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 29 H 0.14 3.52 6.87 -2.92 -0.02 3.50 16 30 H 0.41 11.88 6.98 -92.70 -0.65 11.23 16 31 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.06 1.85 7.78 -2.39 -0.02 1.83 16 33 H 0.06 1.80 7.18 -2.39 -0.02 1.78 16 34 H 0.05 1.86 6.95 -2.39 -0.02 1.84 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 37 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 39 H 0.03 0.73 7.96 -2.39 -0.02 0.71 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.06 1.28 8.12 -2.38 -0.02 1.26 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.03 0.73 7.93 -2.39 -0.02 0.71 16 Total: -1.00 -63.82 356.94 2.54 -61.28 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.32 Total: 20.55 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: 6.62 Total: -18.42 kcal Atomic # 7 Polarization: -102.75 SS G_CDS: -6.43 Total: -109.18 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -63.82 2.54 -61.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877122629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.703 kcal (2) G-P(sol) polarization free energy of solvation -63.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds