Wall clock time and date at job start Mon Mar 30 2020 02:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38012 * 119.50125 * 2 1 4 4 C 1.38840 * 119.38095 * 180.02562 * 3 2 1 5 5 C 1.38857 * 118.44078 * 0.02562 * 4 3 2 6 6 N 1.40012 * 120.51274 * 179.97438 * 5 4 3 7 7 C 1.46502 * 119.99725 * 354.35238 * 6 5 4 8 8 C 1.52999 * 109.46671 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47734 * 304.99508 * 8 7 6 10 10 C 1.53000 * 109.47187 * 65.00577 * 8 7 6 11 11 C 1.53007 * 109.46835 * 185.00291 * 8 7 6 12 12 C 1.50698 * 109.46931 * 175.00328 * 11 8 7 13 13 H 1.07998 * 120.00411 * 359.97438 * 12 11 8 14 14 C 1.37882 * 119.99672 * 179.97438 * 12 11 8 15 15 N 1.31518 * 119.99815 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00080 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47395 * 89.99993 * 16 14 12 18 18 H 1.48500 * 109.47200 * 209.99790 * 16 14 12 19 19 H 1.48499 * 109.47404 * 329.99766 * 16 14 12 20 20 C 1.39718 * 118.97845 * 0.26604 * 5 4 3 21 21 N 1.39281 * 119.74851 * 179.72976 * 20 5 4 22 22 C 1.46896 * 111.00026 * 123.88873 * 21 20 5 23 23 C 1.46899 * 110.99825 * 247.84612 * 21 20 5 24 24 N 1.32044 * 119.50521 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47196 * 89.99798 * 1 2 3 26 26 H 1.09003 * 109.46828 * 210.00023 * 1 2 3 27 27 H 1.09001 * 109.46960 * 329.99824 * 1 2 3 28 28 H 1.07996 * 120.31077 * 0.02562 * 3 2 1 29 29 H 1.08004 * 120.77606 * 179.97438 * 4 3 2 30 30 H 0.96996 * 120.00236 * 174.35044 * 6 5 4 31 31 H 1.08999 * 109.46977 * 60.00733 * 7 6 5 32 32 H 1.08994 * 109.47671 * 299.99918 * 7 6 5 33 33 H 1.09000 * 109.47352 * 59.99790 * 10 8 7 34 34 H 1.08999 * 109.47110 * 179.97438 * 10 8 7 35 35 H 1.08998 * 109.46475 * 299.99526 * 10 8 7 36 36 H 1.09002 * 109.46707 * 295.00010 * 11 8 7 37 37 H 1.08998 * 109.47299 * 54.99881 * 11 8 7 38 38 H 0.97003 * 120.00088 * 180.02562 * 15 14 12 39 39 H 1.09003 * 109.47193 * 60.00208 * 22 21 20 40 40 H 1.09003 * 109.47090 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47177 * 299.99940 * 22 21 20 42 42 H 1.08999 * 109.47422 * 64.41639 * 23 21 20 43 43 H 1.09006 * 109.46995 * 184.41213 * 23 21 20 44 44 H 1.08995 * 109.47164 * 304.40705 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1867 1.2012 0.0000 4 6 3.5751 1.1983 -0.0005 5 6 4.2338 -0.0241 -0.0016 6 7 5.6329 -0.0777 -0.0027 7 6 6.4130 1.1561 -0.1276 8 6 7.9055 0.8205 -0.1008 9 1 8.1339 0.2513 0.8003 10 6 8.2635 -0.0112 -1.3340 11 6 8.7196 2.1160 -0.1055 12 6 10.1833 1.7900 0.0445 13 1 10.5010 0.7618 0.1347 14 6 11.1167 2.8046 0.0667 15 7 12.3940 2.5202 0.1982 16 14 10.5670 4.5831 -0.0886 17 1 10.2977 5.1377 1.2624 18 1 11.6370 5.3764 -0.7450 19 1 9.3294 4.6491 -0.9065 20 6 3.4790 -1.1998 -0.0078 21 7 4.1232 -2.4347 -0.0146 22 6 3.6891 -3.2612 1.1194 23 6 3.9078 -3.1337 -1.2886 24 7 2.1574 -1.1492 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6436 2.1347 0.0004 29 1 4.1297 2.1250 -0.0010 30 1 6.0856 -0.9315 0.0792 31 1 6.1757 1.8216 0.7023 32 1 6.1676 1.6475 -1.0691 33 1 8.0352 0.5580 -2.2351 34 1 9.3269 -0.2499 -1.3151 35 1 7.6835 -0.9341 -1.3306 36 1 8.5592 2.6424 -1.0464 37 1 8.4013 2.7482 0.7233 38 1 13.0507 3.2339 0.2141 39 1 2.6136 -3.4278 1.0570 40 1 4.2078 -4.2195 1.0902 41 1 3.9240 -2.7497 2.0528 42 1 4.3707 -2.5673 -2.0967 43 1 4.3550 -4.1265 -1.2383 44 1 2.8381 -3.2261 -1.4760 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877122630.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:47 Heat of formation + Delta-G solvation = 13.295380 kcal Electronic energy + Delta-G solvation = -21548.188287 eV Core-core repulsion = 18499.272322 eV Total energy + Delta-G solvation = -3048.915965 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.53751 -38.48038 -37.82956 -35.90667 -34.21884 -32.32935 -31.94912 -29.56634 -28.52541 -28.27012 -26.59401 -25.62730 -24.39003 -22.51731 -22.16203 -20.87139 -19.01507 -18.26934 -17.93606 -17.07343 -16.40808 -16.31521 -15.89802 -15.53949 -15.16043 -15.09249 -14.88985 -14.73249 -14.34112 -14.21692 -13.79465 -13.52963 -13.36576 -13.31474 -12.99874 -12.96904 -12.86801 -12.71030 -12.64509 -12.54280 -12.14054 -11.84013 -11.62967 -11.40573 -11.15679 -11.10579 -10.72578 -10.59437 -10.30021 -9.62322 -8.26593 -8.25064 -6.27894 0.24865 0.54638 1.38332 1.40018 1.51244 2.39042 2.51130 2.76379 2.85991 3.10648 3.63881 3.96544 3.99660 4.15336 4.17427 4.21057 4.32572 4.41301 4.44356 4.54604 4.60980 4.71774 4.74952 4.77145 4.84430 4.88365 4.90236 4.94048 4.95941 5.04766 5.10678 5.14989 5.25118 5.32121 5.35330 5.49115 5.64791 5.67230 5.71016 5.86783 6.06679 6.33342 6.50528 6.79986 6.84816 7.13726 7.35792 8.91606 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024391 B = 0.003753 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.703262 B = 7459.359668 C = 8323.645204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.049 3.951 3 C -0.117 4.117 4 C -0.167 4.167 5 C 0.186 3.814 6 N -0.722 5.722 7 C 0.136 3.864 8 C -0.079 4.079 9 H 0.057 0.943 10 C -0.126 4.126 11 C -0.004 4.004 12 C -0.519 4.519 13 H 0.035 0.965 14 C 0.001 3.999 15 N -0.955 5.955 16 Si 0.947 3.053 17 H -0.268 1.268 18 H -0.289 1.289 19 H -0.243 1.243 20 C 0.197 3.803 21 N -0.495 5.495 22 C 0.036 3.964 23 C 0.035 3.965 24 N -0.489 5.489 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.161 0.839 29 H 0.145 0.855 30 H 0.408 0.592 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.037 0.963 35 H 0.059 0.941 36 H 0.024 0.976 37 H 0.020 0.980 38 H 0.264 0.736 39 H 0.034 0.966 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.090 0.910 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.592 -5.437 -1.438 25.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.137 4.137 4 C -0.198 4.198 5 C 0.076 3.924 6 N -0.350 5.350 7 C 0.012 3.988 8 C -0.098 4.098 9 H 0.075 0.925 10 C -0.183 4.183 11 C -0.042 4.042 12 C -0.558 4.558 13 H 0.053 0.947 14 C -0.195 4.195 15 N -0.596 5.596 16 Si 0.771 3.229 17 H -0.194 1.194 18 H -0.215 1.215 19 H -0.166 1.166 20 C -0.038 4.038 21 N -0.218 5.218 22 C -0.112 4.112 23 C -0.112 4.112 24 N -0.201 5.201 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.179 0.821 29 H 0.163 0.837 30 H 0.245 0.755 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.108 0.892 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -24.272 -5.898 -1.399 25.018 hybrid contribution 0.594 0.876 0.022 1.058 sum -23.678 -5.022 -1.377 24.244 Atomic orbital electron populations 1.20582 0.87277 1.03519 1.03058 1.21249 0.97849 0.87728 1.02364 1.22013 0.93543 0.99925 0.98205 1.21340 0.95245 0.96704 1.06545 1.18651 0.85109 0.93513 0.95146 1.44769 1.01432 1.09665 1.79117 1.21408 0.89967 0.86502 1.00907 1.21050 0.92587 0.97547 0.98659 0.92495 1.21624 1.00546 0.99053 0.97097 1.19514 0.93416 0.94477 0.96767 1.21434 0.91865 0.93677 1.48778 0.94661 1.26005 0.94715 1.04269 0.94537 1.70076 1.02261 1.34413 1.52844 0.85700 0.78914 0.78988 0.79296 1.19353 1.21481 1.16580 1.19363 0.87000 0.90661 1.06727 1.60022 1.54555 1.02041 1.05158 1.22331 0.99181 0.97465 0.92203 1.22366 0.99874 0.99245 0.89695 1.67294 1.09269 1.31527 1.12034 0.90507 0.91816 0.89084 0.82132 0.83720 0.75458 0.92058 0.91852 0.93122 0.94418 0.92210 0.95813 0.96129 0.92714 0.94727 0.89285 0.92494 0.92141 0.89158 0.95143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.31 10.16 71.24 0.72 -0.58 16 2 C 0.05 1.09 6.78 42.47 0.29 1.37 16 3 C -0.12 -2.35 9.72 22.36 0.22 -2.13 16 4 C -0.17 -3.95 9.42 22.56 0.21 -3.73 16 5 C 0.19 5.00 6.69 38.34 0.26 5.26 16 6 N -0.72 -19.79 5.45 -338.48 -1.84 -21.64 16 7 C 0.14 3.95 4.39 86.38 0.38 4.33 16 8 C -0.08 -2.87 2.37 -10.79 -0.03 -2.90 16 9 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 10 C -0.13 -4.41 8.88 71.98 0.64 -3.77 16 11 C 0.00 -0.17 3.52 29.85 0.10 -0.07 16 12 C -0.52 -29.01 8.96 25.60 0.23 -28.78 16 13 H 0.04 2.18 7.30 -2.91 -0.02 2.16 16 14 C 0.00 0.05 5.47 84.66 0.46 0.51 16 15 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 16 Si 0.95 43.38 27.47 68.60 1.88 45.26 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 20 C 0.20 5.31 5.39 133.15 0.72 6.03 16 21 N -0.49 -11.96 4.19 -751.01 -3.14 -15.11 16 22 C 0.04 0.75 9.40 127.69 1.20 1.95 16 23 C 0.04 0.74 9.56 127.69 1.22 1.96 16 24 N -0.49 -12.88 9.38 -180.71 -1.69 -14.57 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.09 0.95 8.07 -2.39 -0.02 0.93 16 28 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.15 3.07 6.87 -2.91 -0.02 3.05 16 30 H 0.41 11.42 6.98 -92.71 -0.65 10.77 16 31 H 0.06 1.72 7.78 -2.39 -0.02 1.70 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.04 1.53 6.95 -2.39 -0.02 1.52 16 35 H 0.06 1.79 7.18 -2.39 -0.02 1.77 16 36 H 0.02 1.02 7.20 -2.39 -0.02 1.01 16 37 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 38 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 39 H 0.03 0.76 7.77 -2.39 -0.02 0.74 16 40 H 0.09 1.50 8.07 -2.39 -0.02 1.48 16 41 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.09 1.50 8.05 -2.38 -0.02 1.49 16 44 H 0.03 0.67 7.91 -2.39 -0.02 0.65 16 Total: -1.00 -66.33 352.97 2.39 -63.94 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.26 Total: 22.02 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 6.63 Total: -20.55 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -6.38 Total: -110.67 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.88 Total: 45.26 kcal Total: -66.33 2.39 -63.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877122630.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.230 kcal (2) G-P(sol) polarization free energy of solvation -66.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds