Wall clock time and date at job start Mon Mar 30 2020 02:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38067 * 119.57534 * 2 1 4 4 C 1.38835 * 119.33143 * 179.97438 * 3 2 1 5 5 C 1.38350 * 118.50565 * 359.74844 * 4 3 2 6 6 C 1.39092 * 119.09291 * 0.50974 * 5 4 3 7 7 N 1.39005 * 119.70412 * 179.75267 * 6 5 4 8 8 C 1.46506 * 120.00023 * 359.72816 * 7 6 5 9 9 C 1.53002 * 109.47280 * 180.02562 * 8 7 6 10 10 N 1.46897 * 109.47032 * 180.02562 * 9 8 7 11 11 C 1.46896 * 111.00246 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47357 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.47104 * 55.00451 * 12 11 10 14 14 C 1.52998 * 109.47026 * 294.99646 * 12 11 10 15 15 C 1.53002 * 109.46886 * 174.99797 * 12 11 10 16 16 C 1.50706 * 109.47153 * 184.99546 * 15 12 11 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 12 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 12 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31949 * 119.57503 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47498 * 269.98475 * 1 2 3 26 26 H 1.09001 * 109.46928 * 29.98180 * 1 2 3 27 27 H 1.09001 * 109.47171 * 149.98198 * 1 2 3 28 28 H 1.08006 * 120.33413 * 359.97201 * 3 2 1 29 29 H 1.07998 * 120.75103 * 180.02562 * 4 3 2 30 30 H 1.07998 * 120.45334 * 180.26570 * 5 4 3 31 31 H 0.97003 * 120.00891 * 179.73170 * 7 6 5 32 32 H 1.08999 * 109.47176 * 59.99777 * 8 7 6 33 33 H 1.09002 * 109.46893 * 299.99824 * 8 7 6 34 34 H 1.08999 * 109.47278 * 59.99741 * 9 8 7 35 35 H 1.09002 * 109.46933 * 299.99701 * 9 8 7 36 36 H 1.00901 * 111.00077 * 303.95806 * 10 9 8 37 37 H 1.09001 * 109.47205 * 59.99991 * 11 10 9 38 38 H 1.09002 * 109.47023 * 300.00245 * 11 10 9 39 39 H 1.08990 * 109.47503 * 300.00380 * 14 12 11 40 40 H 1.09001 * 109.46970 * 60.00396 * 14 12 11 41 41 H 1.09003 * 109.46843 * 179.97438 * 14 12 11 42 42 H 1.09004 * 109.47178 * 65.00336 * 15 12 11 43 43 H 1.08993 * 109.47411 * 305.00018 * 15 12 11 44 44 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1884 1.2008 0.0000 4 6 3.5767 1.1949 0.0005 5 6 4.2318 -0.0237 0.0064 6 6 3.4816 -1.1949 0.0007 7 7 4.1267 -2.4262 0.0013 8 6 5.5905 -2.4862 0.0018 9 6 6.0410 -3.9484 0.0018 10 7 7.5088 -4.0085 0.0029 11 6 7.9787 -5.4003 0.0035 12 6 9.5085 -5.4221 0.0054 13 1 9.8791 -4.8380 0.8477 14 6 10.0287 -4.8199 -1.3014 15 6 9.9977 -6.8663 0.1317 16 6 11.4995 -6.8788 0.2570 17 1 12.0498 -5.9495 0.2478 18 6 12.1709 -8.0763 0.3833 19 7 11.5003 -9.2075 0.3998 20 14 14.0323 -8.0917 0.5392 21 1 14.5068 -9.4930 0.6678 22 1 14.6354 -7.4738 -0.6690 23 1 14.4346 -7.3206 1.7428 24 7 2.1582 -1.1476 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6469 2.1353 -0.0005 29 1 4.1329 2.1206 0.0010 30 1 5.3110 -0.0650 0.0113 31 1 3.6078 -3.2457 0.0013 32 1 5.9743 -1.9874 0.8918 33 1 5.9749 -1.9879 -0.8882 34 1 5.6573 -4.4468 -0.8884 35 1 5.6566 -4.4470 0.8916 36 1 7.8922 -3.4973 -0.7779 37 1 7.6088 -5.9090 -0.8867 38 1 7.6073 -5.9088 0.8933 39 1 9.6580 -5.4040 -2.1436 40 1 9.6801 -3.7910 -1.3914 41 1 11.1186 -4.8350 -1.2998 42 1 9.7024 -7.4288 -0.7540 43 1 9.5555 -7.3236 1.0167 44 1 10.5337 -9.1996 0.3191 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877157997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:50 Heat of formation + Delta-G solvation = 12.255028 kcal Electronic energy + Delta-G solvation = -20163.520560 eV Core-core repulsion = 17114.559482 eV Total energy + Delta-G solvation = -3048.961078 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.47141 -37.68469 -36.30377 -34.20600 -32.94366 -32.36018 -31.28410 -28.30995 -27.28862 -26.53367 -25.01259 -23.13923 -22.91155 -22.10427 -21.37785 -19.26777 -17.79376 -16.87229 -16.72223 -16.14090 -15.88876 -15.15566 -15.02959 -14.54975 -14.20991 -13.99769 -13.70054 -13.56353 -13.33080 -13.18593 -12.90118 -12.54589 -12.50470 -12.10297 -11.91249 -11.74138 -11.63246 -11.33102 -11.06132 -10.71477 -10.43013 -10.28113 -10.08911 -9.89231 -9.75160 -9.65912 -9.49248 -8.50166 -8.37624 -8.30397 -7.91964 -6.33342 -4.01709 1.04846 1.25630 2.80114 3.44709 3.46717 3.65249 3.67142 4.23718 4.34564 4.55221 4.57354 4.68148 4.84580 4.90519 5.00705 5.09296 5.23723 5.28966 5.34117 5.36922 5.42762 5.55523 5.57326 5.67763 5.72933 5.75472 5.85917 5.90325 6.08410 6.09655 6.29995 6.34786 6.40656 6.73178 6.79672 6.97254 6.99063 7.12661 7.33967 7.39813 7.42853 7.58160 7.98374 8.25065 8.49104 8.91358 9.69779 11.07003 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.055253 B = 0.002117 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.636034 B =13223.699282 C =13566.617847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.174 3.826 3 C -0.239 4.239 4 C -0.031 4.031 5 C -0.246 4.246 6 C 0.410 3.590 7 N -0.724 5.724 8 C 0.130 3.870 9 C 0.048 3.952 10 N -0.686 5.686 11 C 0.065 3.935 12 C -0.078 4.078 13 H 0.068 0.932 14 C -0.134 4.134 15 C 0.015 3.985 16 C -0.594 4.594 17 H 0.050 0.950 18 C 0.012 3.988 19 N -0.915 5.915 20 Si 1.068 2.932 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.288 1.288 24 N -0.548 5.548 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.404 0.596 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.034 0.966 35 H 0.078 0.922 36 H 0.340 0.660 37 H 0.025 0.975 38 H 0.068 0.932 39 H 0.040 0.960 40 H 0.033 0.967 41 H 0.065 0.935 42 H 0.005 0.995 43 H 0.006 0.994 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.066 20.117 -2.154 27.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.036 3.964 3 C -0.262 4.262 4 C -0.057 4.057 5 C -0.271 4.271 6 C 0.174 3.826 7 N -0.356 5.356 8 C 0.005 3.995 9 C -0.082 4.082 10 N -0.318 5.318 11 C -0.064 4.064 12 C -0.097 4.097 13 H 0.086 0.914 14 C -0.191 4.191 15 C -0.023 4.023 16 C -0.633 4.633 17 H 0.068 0.932 18 C -0.191 4.191 19 N -0.552 5.552 20 Si 0.896 3.104 21 H -0.209 1.209 22 H -0.215 1.215 23 H -0.215 1.215 24 N -0.267 5.267 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.239 0.761 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.159 0.841 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.084 0.916 42 H 0.023 0.977 43 H 0.024 0.976 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.931 18.407 -1.303 25.730 hybrid contribution -1.194 1.184 -1.091 2.004 sum -19.125 19.591 -2.394 27.483 Atomic orbital electron populations 1.20726 0.89052 1.03334 1.03045 1.20898 0.96322 0.87498 0.91715 1.21596 0.94830 0.98816 1.10974 1.21309 0.94249 0.97557 0.92543 1.21423 1.00967 0.91967 1.12707 1.18276 0.88114 0.86263 0.89945 1.44422 1.05864 1.04948 1.80386 1.21331 0.78422 0.97677 1.02076 1.22026 0.90052 0.94788 1.01351 1.60457 1.05563 1.15580 1.50194 1.22166 0.97473 0.86761 0.99960 1.21094 0.90883 0.99938 0.97752 0.91379 1.21737 1.02478 0.97664 0.97250 1.19241 0.96962 0.90367 0.95728 1.22024 0.91787 0.94929 1.54544 0.93177 1.25838 1.06880 0.92364 0.94059 1.70784 1.09751 1.27809 1.46812 0.83560 0.74480 0.75878 0.76463 1.20855 1.21523 1.21464 1.66940 1.07682 1.30342 1.21753 0.90393 0.90667 0.90600 0.85353 0.85059 0.85029 0.76053 0.90773 0.92041 0.94813 0.90383 0.84077 0.95661 0.91370 0.94082 0.94788 0.91623 0.97670 0.97569 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 10.17 36.00 0.37 -0.34 16 2 C 0.17 1.74 6.78 -82.61 -0.56 1.18 16 3 C -0.24 -2.07 9.73 -39.42 -0.38 -2.46 16 4 C -0.03 -0.27 10.17 -39.32 -0.40 -0.67 16 5 C -0.25 -2.49 9.33 -39.22 -0.37 -2.86 16 6 C 0.41 4.74 7.65 -155.02 -1.19 3.56 16 7 N -0.72 -7.50 5.73 -60.42 -0.35 -7.84 16 8 C 0.13 1.26 5.15 -4.04 -0.02 1.24 16 9 C 0.05 0.53 5.80 -3.82 -0.02 0.51 16 10 N -0.69 -9.30 6.50 -113.78 -0.74 -10.04 16 11 C 0.06 1.08 5.14 -3.83 -0.02 1.06 16 12 C -0.08 -1.56 2.55 -90.62 -0.23 -1.79 16 13 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 14 C -0.13 -2.45 8.77 37.16 0.33 -2.13 16 15 C 0.01 0.37 3.76 -27.88 -0.10 0.26 16 16 C -0.59 -16.74 8.41 -34.44 -0.29 -17.03 16 17 H 0.05 1.39 7.06 -52.49 -0.37 1.01 16 18 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 19 N -0.91 -28.17 13.65 55.43 0.76 -27.42 16 20 Si 1.07 25.39 29.90 -169.99 -5.08 20.31 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 N -0.55 -6.61 10.30 -8.67 -0.09 -6.70 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.35 8.08 -51.93 -0.42 -0.06 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 29 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.13 1.17 6.71 -52.49 -0.35 0.82 16 31 H 0.40 3.99 8.60 -40.82 -0.35 3.64 16 32 H 0.07 0.75 7.92 -51.93 -0.41 0.34 16 33 H 0.06 0.57 7.94 -51.93 -0.41 0.16 16 34 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.34 4.30 6.99 -39.29 -0.27 4.03 16 37 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 41 H 0.06 1.32 6.95 -51.93 -0.36 0.96 16 42 H 0.01 0.13 8.01 -51.93 -0.42 -0.28 16 43 H 0.01 0.16 8.00 -51.93 -0.42 -0.25 16 44 H 0.27 8.21 7.22 -40.82 -0.29 7.91 16 LS Contribution 357.66 15.07 5.39 5.39 Total: -1.00 -31.80 357.66 -10.55 -42.34 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.45 Total: 3.17 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -2.99 Total: -19.21 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.42 Total: -52.00 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.31 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.80 -10.55 -42.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877157997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.598 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds