Wall clock time and date at job start Mon Mar 30 2020 02:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38067 * 119.57534 * 2 1 4 4 C 1.38835 * 119.33143 * 179.97438 * 3 2 1 5 5 C 1.38350 * 118.50565 * 359.74844 * 4 3 2 6 6 C 1.39092 * 119.09291 * 0.50974 * 5 4 3 7 7 N 1.39005 * 119.70412 * 179.75267 * 6 5 4 8 8 C 1.46506 * 120.00023 * 359.72816 * 7 6 5 9 9 C 1.53002 * 109.47280 * 180.02562 * 8 7 6 10 10 N 1.46897 * 109.47032 * 180.02562 * 9 8 7 11 11 C 1.46896 * 111.00246 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47357 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.47104 * 55.00451 * 12 11 10 14 14 C 1.52998 * 109.47026 * 294.99646 * 12 11 10 15 15 C 1.53002 * 109.46886 * 174.99797 * 12 11 10 16 16 C 1.50706 * 109.47153 * 184.99546 * 15 12 11 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 12 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 12 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31949 * 119.57503 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47498 * 269.98475 * 1 2 3 26 26 H 1.09001 * 109.46928 * 29.98180 * 1 2 3 27 27 H 1.09001 * 109.47171 * 149.98198 * 1 2 3 28 28 H 1.08006 * 120.33413 * 359.97201 * 3 2 1 29 29 H 1.07998 * 120.75103 * 180.02562 * 4 3 2 30 30 H 1.07998 * 120.45334 * 180.26570 * 5 4 3 31 31 H 0.97003 * 120.00891 * 179.73170 * 7 6 5 32 32 H 1.08999 * 109.47176 * 59.99777 * 8 7 6 33 33 H 1.09002 * 109.46893 * 299.99824 * 8 7 6 34 34 H 1.08999 * 109.47278 * 59.99741 * 9 8 7 35 35 H 1.09002 * 109.46933 * 299.99701 * 9 8 7 36 36 H 1.00901 * 111.00077 * 303.95806 * 10 9 8 37 37 H 1.09001 * 109.47205 * 59.99991 * 11 10 9 38 38 H 1.09002 * 109.47023 * 300.00245 * 11 10 9 39 39 H 1.08990 * 109.47503 * 300.00380 * 14 12 11 40 40 H 1.09001 * 109.46970 * 60.00396 * 14 12 11 41 41 H 1.09003 * 109.46843 * 179.97438 * 14 12 11 42 42 H 1.09004 * 109.47178 * 65.00336 * 15 12 11 43 43 H 1.08993 * 109.47411 * 305.00018 * 15 12 11 44 44 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1884 1.2008 0.0000 4 6 3.5767 1.1949 0.0005 5 6 4.2318 -0.0237 0.0064 6 6 3.4816 -1.1949 0.0007 7 7 4.1267 -2.4262 0.0013 8 6 5.5905 -2.4862 0.0018 9 6 6.0410 -3.9484 0.0018 10 7 7.5088 -4.0085 0.0029 11 6 7.9787 -5.4003 0.0035 12 6 9.5085 -5.4221 0.0054 13 1 9.8791 -4.8380 0.8477 14 6 10.0287 -4.8199 -1.3014 15 6 9.9977 -6.8663 0.1317 16 6 11.4995 -6.8788 0.2570 17 1 12.0498 -5.9495 0.2478 18 6 12.1709 -8.0763 0.3833 19 7 11.5003 -9.2075 0.3998 20 14 14.0323 -8.0917 0.5392 21 1 14.5068 -9.4930 0.6678 22 1 14.6354 -7.4738 -0.6690 23 1 14.4346 -7.3206 1.7428 24 7 2.1582 -1.1476 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6469 2.1353 -0.0005 29 1 4.1329 2.1206 0.0010 30 1 5.3110 -0.0650 0.0113 31 1 3.6078 -3.2457 0.0013 32 1 5.9743 -1.9874 0.8918 33 1 5.9749 -1.9879 -0.8882 34 1 5.6573 -4.4468 -0.8884 35 1 5.6566 -4.4470 0.8916 36 1 7.8922 -3.4973 -0.7779 37 1 7.6088 -5.9090 -0.8867 38 1 7.6073 -5.9088 0.8933 39 1 9.6580 -5.4040 -2.1436 40 1 9.6801 -3.7910 -1.3914 41 1 11.1186 -4.8350 -1.2998 42 1 9.7024 -7.4288 -0.7540 43 1 9.5555 -7.3236 1.0167 44 1 10.5337 -9.1996 0.3191 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877157997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:50 Heat of formation + Delta-G solvation = -7.990132 kcal Electronic energy + Delta-G solvation = -20164.398456 eV Core-core repulsion = 17114.559482 eV Total energy + Delta-G solvation = -3049.838974 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18121 -38.88178 -37.41946 -35.73196 -34.03191 -33.59985 -32.24676 -29.40599 -28.33901 -27.94658 -26.50265 -24.55394 -23.78872 -23.32086 -22.14282 -20.89275 -18.89558 -18.57161 -17.51204 -17.24498 -16.60456 -16.14851 -15.97680 -15.75770 -15.59497 -15.36613 -14.90924 -14.77198 -14.61830 -14.04706 -13.80542 -13.63975 -13.50523 -13.39516 -13.02656 -12.93434 -12.77165 -12.65574 -12.48897 -12.46459 -11.96184 -11.84423 -11.61596 -11.31676 -11.13065 -10.58284 -10.52110 -10.48196 -10.39003 -9.50950 -8.65407 -8.65381 -6.34560 0.34714 0.55637 1.52751 1.61326 1.80121 2.01485 2.58151 2.95427 3.18568 3.26085 3.60929 3.81471 3.96785 3.99535 4.10415 4.16874 4.19308 4.33018 4.36934 4.42679 4.47843 4.62800 4.71802 4.72782 4.79647 4.81769 4.84918 4.86372 4.91781 5.02051 5.18948 5.22909 5.23562 5.30673 5.41684 5.47620 5.61904 5.68367 5.88668 6.06576 6.07932 6.22297 6.38166 6.56829 6.62020 7.25026 7.46381 8.75186 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.055253 B = 0.002117 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.636034 B =13223.699282 C =13566.617847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.153 3.847 3 C -0.239 4.239 4 C -0.033 4.033 5 C -0.259 4.259 6 C 0.387 3.613 7 N -0.726 5.726 8 C 0.142 3.858 9 C 0.053 3.947 10 N -0.684 5.684 11 C 0.078 3.922 12 C -0.071 4.071 13 H 0.058 0.942 14 C -0.127 4.127 15 C 0.015 3.985 16 C -0.605 4.605 17 H 0.054 0.946 18 C -0.045 4.045 19 N -0.942 5.942 20 Si 1.116 2.884 21 H -0.286 1.286 22 H -0.268 1.268 23 H -0.270 1.270 24 N -0.577 5.577 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.141 0.859 31 H 0.403 0.597 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.349 0.651 37 H 0.026 0.974 38 H 0.058 0.942 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.044 0.956 42 H -0.014 1.014 43 H -0.017 1.017 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.141 22.753 -2.558 29.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.016 3.984 3 C -0.262 4.262 4 C -0.059 4.059 5 C -0.284 4.284 6 C 0.152 3.848 7 N -0.359 5.359 8 C 0.017 3.983 9 C -0.076 4.076 10 N -0.317 5.317 11 C -0.051 4.051 12 C -0.090 4.090 13 H 0.076 0.924 14 C -0.184 4.184 15 C -0.022 4.022 16 C -0.643 4.643 17 H 0.072 0.928 18 C -0.242 4.242 19 N -0.580 5.580 20 Si 0.938 3.062 21 H -0.212 1.212 22 H -0.193 1.193 23 H -0.195 1.195 24 N -0.297 5.297 25 H 0.104 0.896 26 H 0.116 0.884 27 H 0.086 0.914 28 H 0.173 0.827 29 H 0.177 0.823 30 H 0.158 0.842 31 H 0.239 0.761 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.169 0.831 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.005 0.995 43 H 0.001 0.999 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.035 21.081 -1.715 27.796 hybrid contribution -1.266 0.427 -0.956 1.643 sum -19.301 21.508 -2.671 29.021 Atomic orbital electron populations 1.20793 0.87212 1.04092 1.03756 1.21488 0.97790 0.87581 0.91590 1.21958 0.95108 0.99455 1.09658 1.21715 0.94637 0.98167 0.91378 1.21636 1.01511 0.92152 1.13078 1.18556 0.88418 0.86918 0.90915 1.44398 1.05911 1.04852 1.80736 1.21171 0.78253 0.96460 1.02383 1.21981 0.88305 0.95914 1.01432 1.60331 1.07212 1.13404 1.50763 1.21836 0.94921 0.88707 0.99634 1.20915 0.93364 0.96162 0.98517 0.92389 1.21656 1.01041 0.99832 0.95916 1.19191 0.95799 0.93576 0.93656 1.22444 0.93355 0.95032 1.53435 0.92801 1.27423 1.11360 0.92127 0.93241 1.70922 1.09042 1.28867 1.49172 0.82944 0.69221 0.76106 0.77957 1.21171 1.19311 1.19482 1.66949 1.08192 1.31734 1.22834 0.89606 0.88359 0.91382 0.82652 0.82295 0.84154 0.76149 0.91015 0.91119 0.94266 0.90791 0.83115 0.95537 0.92339 0.94129 0.90932 0.93684 0.99536 0.99916 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.17 71.23 0.72 -0.50 16 2 C 0.15 2.88 6.78 42.50 0.29 3.17 16 3 C -0.24 -3.62 9.73 22.37 0.22 -3.40 16 4 C -0.03 -0.51 10.17 22.44 0.23 -0.28 16 5 C -0.26 -4.89 9.33 22.50 0.21 -4.68 16 6 C 0.39 8.73 7.65 133.05 1.02 9.74 16 7 N -0.73 -14.62 5.73 -345.08 -1.98 -16.59 16 8 C 0.14 2.57 5.15 86.38 0.44 3.01 16 9 C 0.05 1.11 5.80 86.30 0.50 1.61 16 10 N -0.68 -17.40 6.50 -513.90 -3.34 -20.74 16 11 C 0.08 2.56 5.14 86.30 0.44 3.00 16 12 C -0.07 -2.82 2.55 -10.79 -0.03 -2.85 16 13 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 14 C -0.13 -4.48 8.77 71.98 0.63 -3.85 16 15 C 0.02 0.79 3.76 29.85 0.11 0.91 16 16 C -0.60 -34.43 8.41 25.60 0.22 -34.21 16 17 H 0.05 2.97 7.06 -2.91 -0.02 2.95 16 18 C -0.04 -2.63 5.46 84.65 0.46 -2.17 16 19 N -0.94 -59.33 13.65 21.45 0.29 -59.04 16 20 Si 1.12 50.69 29.90 68.60 2.05 52.74 16 21 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 N -0.58 -13.73 10.30 -181.34 -1.87 -15.60 16 25 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 26 H 0.10 0.69 8.08 -2.39 -0.02 0.67 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 29 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 30 H 0.14 2.26 6.71 -2.91 -0.02 2.24 16 31 H 0.40 7.92 8.60 -92.71 -0.80 7.12 16 32 H 0.07 1.35 7.92 -2.39 -0.02 1.33 16 33 H 0.07 1.16 7.94 -2.39 -0.02 1.14 16 34 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.35 7.90 6.99 -89.69 -0.63 7.27 16 37 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.07 1.99 6.68 -2.39 -0.02 1.97 16 41 H 0.04 1.76 6.95 -2.39 -0.02 1.74 16 42 H -0.01 -0.75 8.01 -2.39 -0.02 -0.77 16 43 H -0.02 -0.98 8.00 -2.39 -0.02 -1.00 16 44 H 0.25 16.18 7.22 -92.71 -0.67 15.51 16 Total: -1.00 -69.76 357.66 0.28 -69.48 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -0.34 Total: 20.24 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: 5.47 Total: -30.49 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -6.89 Total: -111.97 kcal Atomic # 14 Polarization: 50.69 SS G_CDS: 2.05 Total: 52.74 kcal Total: -69.76 0.28 -69.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877157997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.489 kcal (2) G-P(sol) polarization free energy of solvation -69.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds