Wall clock time and date at job start Mon Mar 30 2020 02:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38060 * 119.57603 * 2 1 4 4 C 1.38833 * 119.33024 * 179.97438 * 3 2 1 5 5 C 1.38340 * 118.50838 * 359.74958 * 4 3 2 6 6 C 1.39102 * 119.09413 * 0.51389 * 5 4 3 7 7 N 1.39010 * 119.70445 * 179.74991 * 6 5 4 8 8 C 1.46496 * 119.99886 * 359.72983 * 7 6 5 9 9 C 1.53001 * 109.46971 * 180.02562 * 8 7 6 10 10 N 1.46902 * 109.47288 * 179.97438 * 9 8 7 11 11 C 1.46901 * 111.00023 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.46818 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.47398 * 305.00447 * 12 11 10 14 14 C 1.53002 * 109.47233 * 65.00620 * 12 11 10 15 15 C 1.52997 * 109.47060 * 185.00277 * 12 11 10 16 16 C 1.50698 * 109.47721 * 175.00208 * 15 12 11 17 17 H 1.08008 * 119.99163 * 0.02562 * 16 15 12 18 18 C 1.37869 * 120.00614 * 180.02562 * 16 15 12 19 19 N 1.31515 * 119.99741 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00175 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47121 * 60.00002 * 20 18 16 22 22 H 1.48503 * 109.47160 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47085 * 299.99898 * 20 18 16 24 24 N 1.31951 * 119.56938 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47764 * 269.97918 * 1 2 3 26 26 H 1.09009 * 109.46849 * 29.98611 * 1 2 3 27 27 H 1.09002 * 109.47327 * 149.97564 * 1 2 3 28 28 H 1.08004 * 120.33638 * 359.97287 * 3 2 1 29 29 H 1.07999 * 120.74706 * 180.02562 * 4 3 2 30 30 H 1.07997 * 120.45876 * 180.26541 * 5 4 3 31 31 H 0.97005 * 119.99678 * 179.72233 * 7 6 5 32 32 H 1.08993 * 109.47601 * 59.99994 * 8 7 6 33 33 H 1.09004 * 109.47128 * 299.99168 * 8 7 6 34 34 H 1.09000 * 109.47857 * 59.99247 * 9 8 7 35 35 H 1.09004 * 109.46863 * 299.99205 * 9 8 7 36 36 H 1.00892 * 110.99942 * 303.95477 * 10 9 8 37 37 H 1.09002 * 109.46747 * 60.00311 * 11 10 9 38 38 H 1.08991 * 109.47315 * 300.00378 * 11 10 9 39 39 H 1.09002 * 109.47075 * 59.99068 * 14 12 11 40 40 H 1.08996 * 109.47407 * 180.02562 * 14 12 11 41 41 H 1.09000 * 109.46986 * 299.99797 * 14 12 11 42 42 H 1.09000 * 109.47325 * 295.00173 * 15 12 11 43 43 H 1.09008 * 109.47017 * 55.00082 * 15 12 11 44 44 H 0.97006 * 119.99397 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2007 0.0000 4 6 3.5767 1.1948 0.0005 5 6 4.2318 -0.0237 0.0064 6 6 3.4815 -1.1950 0.0006 7 7 4.1267 -2.4263 0.0011 8 6 5.5904 -2.4863 0.0017 9 6 6.0409 -3.9485 0.0015 10 7 7.5087 -4.0086 0.0015 11 6 7.9786 -5.4005 0.0019 12 6 9.5084 -5.4223 0.0013 13 1 9.8798 -4.8384 -0.8409 14 6 10.0276 -4.8195 1.3082 15 6 9.9978 -6.8665 -0.1241 16 6 11.4996 -6.8791 -0.2482 17 1 12.0500 -5.9498 -0.2382 18 6 12.1710 -8.0766 -0.3745 19 7 11.5007 -9.2081 -0.3861 20 14 14.0325 -8.0921 -0.5291 21 1 14.6345 -7.4688 0.6769 22 1 14.5075 -9.4938 -0.6506 23 1 14.4354 -7.3260 -1.7357 24 7 2.1581 -1.1477 -0.0005 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5137 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6470 2.1352 -0.0004 29 1 4.1329 2.1206 0.0010 30 1 5.3110 -0.0651 0.0113 31 1 3.6077 -3.2458 0.0011 32 1 5.9742 -1.9876 0.8917 33 1 5.9749 -1.9880 -0.8883 34 1 5.6572 -4.4469 -0.8887 35 1 5.6566 -4.4472 0.8913 36 1 7.8915 -3.4977 -0.7797 37 1 7.6079 -5.9093 -0.8880 38 1 7.6079 -5.9088 0.8919 39 1 9.6562 -5.4034 2.1504 40 1 11.1175 -4.8346 1.3076 41 1 9.6790 -3.7907 1.3975 42 1 9.7018 -7.4286 0.7616 43 1 9.5562 -7.3242 -1.0094 44 1 11.9732 -10.0507 -0.4746 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877157998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:53 Heat of formation + Delta-G solvation = 15.740838 kcal Electronic energy + Delta-G solvation = -20123.844894 eV Core-core repulsion = 17075.034972 eV Total energy + Delta-G solvation = -3048.809922 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.44589 -37.56120 -36.17468 -34.03766 -32.91832 -32.24184 -31.29678 -28.34589 -27.29008 -26.69261 -24.91460 -23.11404 -22.89926 -22.05773 -21.35309 -19.12457 -17.72448 -16.78320 -16.34910 -16.00019 -15.84694 -15.02706 -14.96153 -14.58074 -14.33505 -14.13615 -13.78255 -13.70982 -13.16872 -13.03066 -12.66218 -12.46995 -12.27526 -12.02549 -11.98265 -11.57920 -11.50151 -11.34910 -10.85718 -10.78182 -10.40454 -10.30988 -10.28121 -9.74306 -9.71551 -9.63507 -9.18139 -8.99044 -8.33915 -8.27463 -7.89101 -5.98692 -4.00050 1.07180 1.27982 2.83745 3.33694 3.38178 3.40538 3.69504 4.26649 4.38760 4.49194 4.57985 4.73294 4.87819 4.95298 5.03072 5.11970 5.28534 5.30940 5.36399 5.37090 5.39191 5.60543 5.67931 5.74440 5.75325 5.87326 5.88416 6.10634 6.11061 6.34802 6.38261 6.49520 6.64318 6.81951 6.95386 7.12812 7.15594 7.25223 7.37293 7.51940 7.67270 7.82827 8.00967 8.01065 8.44781 9.06007 9.63356 11.12756 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.055430 B = 0.002111 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.018745 B =13261.245239 C =13602.607936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.174 3.826 3 C -0.240 4.240 4 C -0.031 4.031 5 C -0.246 4.246 6 C 0.410 3.590 7 N -0.723 5.723 8 C 0.130 3.870 9 C 0.048 3.952 10 N -0.684 5.684 11 C 0.065 3.935 12 C -0.083 4.083 13 H 0.054 0.946 14 C -0.123 4.123 15 C 0.027 3.973 16 C -0.514 4.514 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 N -0.548 5.548 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.128 0.872 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.404 0.596 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.339 0.661 37 H 0.026 0.974 38 H 0.068 0.932 39 H 0.039 0.961 40 H 0.054 0.946 41 H 0.042 0.958 42 H 0.016 0.984 43 H 0.012 0.988 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.129 19.597 0.523 27.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.036 3.964 3 C -0.263 4.263 4 C -0.057 4.057 5 C -0.271 4.271 6 C 0.174 3.826 7 N -0.356 5.356 8 C 0.005 3.995 9 C -0.082 4.082 10 N -0.315 5.315 11 C -0.063 4.063 12 C -0.102 4.102 13 H 0.073 0.927 14 C -0.181 4.181 15 C -0.010 4.010 16 C -0.552 4.552 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 N -0.267 5.267 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.239 0.761 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.157 0.843 37 H 0.045 0.955 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.035 0.965 43 H 0.031 0.969 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.283 18.688 1.197 26.879 hybrid contribution 1.200 -0.011 -1.023 1.577 sum -18.083 18.677 0.173 25.997 Atomic orbital electron populations 1.20726 0.89075 1.03326 1.03026 1.20893 0.96311 0.87507 0.91730 1.21589 0.94835 0.98804 1.11035 1.21304 0.94244 0.97561 0.92567 1.21423 1.00974 0.91958 1.12697 1.18286 0.88102 0.86291 0.89906 1.44436 1.05919 1.04921 1.80320 1.21337 0.78344 0.97781 1.02039 1.22021 0.90178 0.94654 1.01325 1.60432 1.05429 1.15739 1.49893 1.22174 0.97568 0.86552 1.00038 1.21212 0.90851 1.00427 0.97685 0.92748 1.21595 1.00937 0.98736 0.96794 1.19119 0.95835 0.89116 0.96959 1.21192 0.92135 0.92326 1.49562 0.92593 1.25027 0.98246 0.95773 0.95555 1.69958 1.35491 0.97435 1.50765 0.86675 0.85930 0.76869 0.78620 1.20262 1.21375 1.20316 1.66945 1.07700 1.30320 1.21769 0.90410 0.90686 0.90601 0.85383 0.85083 0.85013 0.76051 0.90830 0.92030 0.94821 0.90447 0.84330 0.95548 0.91375 0.94136 0.92706 0.93935 0.96532 0.96929 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 10.17 36.01 0.37 -0.34 16 2 C 0.17 1.74 6.78 -82.61 -0.56 1.18 16 3 C -0.24 -2.09 9.73 -39.43 -0.38 -2.47 16 4 C -0.03 -0.27 10.17 -39.32 -0.40 -0.67 16 5 C -0.25 -2.49 9.33 -39.22 -0.37 -2.85 16 6 C 0.41 4.74 7.65 -155.01 -1.19 3.56 16 7 N -0.72 -7.48 5.73 -60.43 -0.35 -7.82 16 8 C 0.13 1.25 5.15 -4.04 -0.02 1.23 16 9 C 0.05 0.53 5.80 -3.82 -0.02 0.51 16 10 N -0.68 -9.05 5.96 -113.78 -0.68 -9.73 16 11 C 0.07 1.08 5.08 -3.82 -0.02 1.06 16 12 C -0.08 -1.65 2.48 -90.62 -0.22 -1.87 16 13 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 14 C -0.12 -2.34 8.89 37.16 0.33 -2.01 16 15 C 0.03 0.69 4.45 -27.89 -0.12 0.57 16 16 C -0.51 -14.30 8.41 -34.44 -0.29 -14.59 16 17 H 0.06 1.51 7.06 -52.48 -0.37 1.14 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 20 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 N -0.55 -6.63 10.31 -8.67 -0.09 -6.72 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.36 8.08 -51.92 -0.42 -0.06 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 29 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 30 H 0.13 1.17 6.71 -52.49 -0.35 0.82 16 31 H 0.40 3.99 8.60 -40.82 -0.35 3.64 16 32 H 0.07 0.73 7.92 -51.93 -0.41 0.32 16 33 H 0.06 0.56 7.94 -51.93 -0.41 0.15 16 34 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.34 4.18 8.73 -39.30 -0.34 3.84 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 41 H 0.04 0.71 7.75 -51.93 -0.40 0.31 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.01 0.34 8.14 -51.92 -0.42 -0.09 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -31.05 361.23 -10.58 -41.63 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.63 Total: 1.99 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -3.00 Total: -15.24 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.38 Total: -50.44 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.05 -10.58 -41.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877157998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.373 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds