Wall clock time and date at job start Mon Mar 30 2020 01:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46976 * 2 1 4 4 C 1.52993 * 109.47284 * 240.00185 * 2 1 3 5 5 C 1.50696 * 109.47480 * 64.99550 * 4 2 1 6 6 H 1.08007 * 120.00207 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00247 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99932 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99935 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47119 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47137 * 120.00480 * 9 7 5 12 12 H 1.48502 * 109.47034 * 239.99645 * 9 7 5 13 13 C 1.52991 * 109.47165 * 119.99616 * 2 1 3 14 14 N 1.46901 * 109.47412 * 295.00235 * 13 2 1 15 15 C 1.46901 * 110.99952 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47062 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47341 * 179.97438 * 16 15 14 18 18 H 1.09001 * 109.47289 * 304.99525 * 17 16 15 19 19 O 1.42905 * 109.47264 * 64.99692 * 17 16 15 20 20 C 1.50701 * 109.47212 * 184.99607 * 17 16 15 21 21 C 1.38230 * 119.99878 * 279.72447 * 20 17 16 22 22 C 1.38243 * 119.99631 * 179.78728 * 21 20 17 23 23 C 1.38231 * 119.99827 * 0.44496 * 22 21 20 24 24 C 1.38229 * 120.00398 * 359.81209 * 23 22 21 25 25 C 1.38234 * 119.99919 * 359.97438 * 24 23 22 26 26 H 1.08996 * 109.47159 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47362 * 300.00339 * 1 2 3 28 28 H 1.09000 * 109.47262 * 60.00143 * 1 2 3 29 29 H 1.08997 * 109.47267 * 185.00157 * 4 2 1 30 30 H 1.09004 * 109.46865 * 304.99691 * 4 2 1 31 31 H 0.97005 * 120.00017 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.47171 * 175.00025 * 13 2 1 33 33 H 1.08998 * 109.47510 * 55.00200 * 13 2 1 34 34 H 1.00898 * 110.99829 * 303.95099 * 14 13 2 35 35 H 1.08994 * 109.47616 * 59.99798 * 15 14 13 36 36 H 1.09006 * 109.46955 * 299.99474 * 15 14 13 37 37 H 1.09004 * 109.47686 * 59.99663 * 16 15 14 38 38 H 1.09002 * 109.46818 * 299.99886 * 16 15 14 39 39 H 0.96705 * 113.99788 * 60.00095 * 19 17 16 40 40 H 1.08002 * 120.00498 * 0.02562 * 21 20 17 41 41 H 1.08002 * 119.99997 * 180.27329 * 22 21 20 42 42 H 1.08007 * 119.99687 * 179.83113 * 23 22 21 43 43 H 1.08005 * 120.00342 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00529 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0806 0.9746 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6747 -1.5197 -3.8512 9 14 1.4987 0.5628 -5.2496 10 1 0.7433 1.7749 -4.8433 11 1 2.7170 0.9666 -5.9966 12 1 0.6441 -0.2858 -6.1184 13 6 2.0400 -0.7211 1.2492 14 7 1.6514 0.0376 2.4456 15 6 2.1258 -0.6264 3.6671 16 6 1.7024 0.1911 4.8892 17 6 2.1959 -0.5007 6.1615 18 1 1.8342 -1.5288 6.1798 19 8 3.6248 -0.4980 6.1815 20 6 1.6753 0.2365 7.3684 21 6 2.3049 1.3894 7.7987 22 6 1.8247 2.0680 8.9032 23 6 0.7205 1.5887 9.5827 24 6 0.0941 0.4329 9.1555 25 6 0.5716 -0.2433 8.0484 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 3.1263 -0.7994 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 2.9221 -1.8427 -4.7318 32 1 3.1263 -0.7993 1.2056 33 1 1.6055 -1.7197 1.2952 34 1 1.9882 0.9874 2.3966 35 1 3.2127 -0.7036 3.6400 36 1 1.6921 -1.6244 3.7301 37 1 0.6154 0.2679 4.9162 38 1 2.1357 1.1893 4.8265 39 1 4.0167 0.3859 6.1669 40 1 3.1697 1.7621 7.2699 41 1 2.3139 2.9712 9.2369 42 1 0.3469 2.1174 10.4472 43 1 -0.7685 0.0581 9.6866 44 1 0.0820 -1.1461 7.7143 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877527549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:54 Heat of formation + Delta-G solvation = -53.860168 kcal Electronic energy + Delta-G solvation = -20472.727717 eV Core-core repulsion = 17388.606918 eV Total energy + Delta-G solvation = -3084.120799 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.99744 -37.68349 -36.64077 -34.25166 -32.46987 -31.81511 -31.19370 -29.83513 -26.84732 -25.86685 -24.30780 -22.97124 -22.41647 -21.73607 -21.19970 -19.03191 -17.85581 -16.42299 -16.25806 -16.10901 -15.69920 -15.27954 -14.68027 -14.40868 -14.35535 -14.05737 -13.73924 -13.53018 -13.27215 -13.08984 -12.49874 -12.28416 -12.08851 -11.86565 -11.54011 -11.42276 -11.40199 -11.12026 -11.04929 -10.83516 -10.68934 -10.39600 -10.27030 -10.13686 -9.67381 -9.26027 -9.15222 -9.04127 -8.90139 -8.31416 -8.08571 -5.95860 -3.96839 0.98681 1.06113 3.33142 3.40611 3.40994 3.44850 4.12318 4.20881 4.47804 4.49374 4.55490 4.66962 4.76788 4.85592 5.05754 5.12499 5.17766 5.34208 5.40021 5.42673 5.61221 5.66026 5.70755 5.75538 5.87390 6.01892 6.08256 6.11310 6.17416 6.19075 6.26570 6.44652 6.58254 6.64462 6.71329 7.04001 7.20549 7.22452 7.31819 7.39943 7.67205 7.72802 7.88082 8.04676 8.48781 9.09827 9.66429 11.15724 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.041407 B = 0.002343 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.052192 B =11948.253887 C =12142.316710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.026 3.974 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.689 5.689 15 C 0.061 3.939 16 C -0.142 4.142 17 C 0.147 3.853 18 H 0.108 0.892 19 O -0.554 6.554 20 C -0.111 4.111 21 C -0.113 4.113 22 C -0.118 4.118 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.110 4.110 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.259 0.741 32 H 0.024 0.976 33 H 0.065 0.935 34 H 0.335 0.665 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.372 0.628 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 5.057 26.859 27.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.320 5.320 15 C -0.069 4.069 16 C -0.180 4.180 17 C 0.088 3.912 18 H 0.126 0.874 19 O -0.359 6.359 20 C -0.111 4.111 21 C -0.131 4.131 22 C -0.136 4.136 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.128 4.128 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.152 0.848 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.220 0.780 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.862 4.003 26.765 27.214 hybrid contribution 0.757 1.260 -0.948 1.749 sum -2.106 5.263 25.817 26.432 Atomic orbital electron populations 1.21585 0.95757 1.00544 1.00095 1.21197 0.95980 0.98873 0.94081 0.92901 1.19131 0.95924 0.95604 0.90476 1.21278 1.34450 1.08235 0.90975 0.92524 1.25034 0.95392 0.95121 0.99127 1.69979 1.39224 1.21238 1.23239 0.86569 0.78223 0.80126 0.83287 1.19764 1.21136 1.21087 1.22142 0.97181 0.97696 0.89430 1.60560 1.64050 1.05693 1.01667 1.21864 0.97779 0.97989 0.89227 1.22252 1.02847 0.99265 0.93606 1.20871 0.80610 0.99544 0.90219 0.87406 1.86644 1.18748 1.33681 1.96850 1.20612 0.96561 0.96233 0.97739 1.20882 0.99903 0.95054 0.97242 1.21130 0.96808 0.99842 0.95784 1.21180 0.96279 0.96648 1.00022 1.21168 0.99923 0.95654 0.96867 1.21038 0.96187 1.00078 0.95499 0.94187 0.93986 0.92801 0.96927 0.96548 0.93171 0.95779 0.91605 0.84792 0.94852 0.91301 0.89982 0.91679 0.77995 0.86259 0.85997 0.86108 0.85940 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.08 -1.71 2.48 -90.63 -0.22 -1.93 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.68 4.45 -27.89 -0.12 0.56 16 5 C -0.51 -14.47 8.41 -34.44 -0.29 -14.76 16 6 H 0.06 1.57 7.06 -52.48 -0.37 1.20 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.06 1.13 5.07 -3.83 -0.02 1.11 16 14 N -0.69 -10.04 5.96 -113.78 -0.68 -10.72 16 15 C 0.06 0.75 5.58 -3.82 -0.02 0.72 16 16 C -0.14 -1.38 5.13 -26.73 -0.14 -1.51 16 17 C 0.15 1.34 3.21 -27.88 -0.09 1.25 16 18 H 0.11 0.98 8.00 -51.93 -0.42 0.57 16 19 O -0.55 -5.44 12.72 -35.23 -0.45 -5.89 16 20 C -0.11 -0.98 4.97 -104.62 -0.52 -1.50 16 21 C -0.11 -0.91 9.32 -39.58 -0.37 -1.28 16 22 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 23 C -0.12 -0.91 10.05 -39.59 -0.40 -1.31 16 24 C -0.12 -0.90 10.05 -39.59 -0.40 -1.30 16 25 C -0.11 -0.93 9.67 -39.58 -0.38 -1.31 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 28 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.34 4.61 8.73 -39.29 -0.34 4.26 16 35 H 0.03 0.43 7.82 -51.93 -0.41 0.02 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.37 2.50 7.50 45.56 0.34 2.84 16 40 H 0.12 0.74 6.78 -52.49 -0.36 0.38 16 41 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 42 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 43 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 44 H 0.12 0.87 8.04 -52.49 -0.42 0.45 16 LS Contribution 360.00 15.07 5.43 5.43 Total: -1.00 -31.73 360.00 -10.07 -41.79 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.94 Total: 2.22 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -3.14 Total: -23.18 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.06 Total: -37.24 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.45 Total: -5.89 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.73 -10.07 -41.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877527549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.068 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds