Wall clock time and date at job start Mon Mar 30 2020 01:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46976 * 2 1 4 4 C 1.52993 * 109.47284 * 240.00185 * 2 1 3 5 5 C 1.50696 * 109.47480 * 64.99550 * 4 2 1 6 6 H 1.08007 * 120.00207 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00247 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99932 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99935 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47119 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47137 * 120.00480 * 9 7 5 12 12 H 1.48502 * 109.47034 * 239.99645 * 9 7 5 13 13 C 1.52991 * 109.47165 * 119.99616 * 2 1 3 14 14 N 1.46901 * 109.47412 * 295.00235 * 13 2 1 15 15 C 1.46901 * 110.99952 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47062 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47341 * 179.97438 * 16 15 14 18 18 H 1.09001 * 109.47289 * 304.99525 * 17 16 15 19 19 O 1.42905 * 109.47264 * 64.99692 * 17 16 15 20 20 C 1.50701 * 109.47212 * 184.99607 * 17 16 15 21 21 C 1.38230 * 119.99878 * 279.72447 * 20 17 16 22 22 C 1.38243 * 119.99631 * 179.78728 * 21 20 17 23 23 C 1.38231 * 119.99827 * 0.44496 * 22 21 20 24 24 C 1.38229 * 120.00398 * 359.81209 * 23 22 21 25 25 C 1.38234 * 119.99919 * 359.97438 * 24 23 22 26 26 H 1.08996 * 109.47159 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47362 * 300.00339 * 1 2 3 28 28 H 1.09000 * 109.47262 * 60.00143 * 1 2 3 29 29 H 1.08997 * 109.47267 * 185.00157 * 4 2 1 30 30 H 1.09004 * 109.46865 * 304.99691 * 4 2 1 31 31 H 0.97005 * 120.00017 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.47171 * 175.00025 * 13 2 1 33 33 H 1.08998 * 109.47510 * 55.00200 * 13 2 1 34 34 H 1.00898 * 110.99829 * 303.95099 * 14 13 2 35 35 H 1.08994 * 109.47616 * 59.99798 * 15 14 13 36 36 H 1.09006 * 109.46955 * 299.99474 * 15 14 13 37 37 H 1.09004 * 109.47686 * 59.99663 * 16 15 14 38 38 H 1.09002 * 109.46818 * 299.99886 * 16 15 14 39 39 H 0.96705 * 113.99788 * 60.00095 * 19 17 16 40 40 H 1.08002 * 120.00498 * 0.02562 * 21 20 17 41 41 H 1.08002 * 119.99997 * 180.27329 * 22 21 20 42 42 H 1.08007 * 119.99687 * 179.83113 * 23 22 21 43 43 H 1.08005 * 120.00342 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00529 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0806 0.9746 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6747 -1.5197 -3.8512 9 14 1.4987 0.5628 -5.2496 10 1 0.7433 1.7749 -4.8433 11 1 2.7170 0.9666 -5.9966 12 1 0.6441 -0.2858 -6.1184 13 6 2.0400 -0.7211 1.2492 14 7 1.6514 0.0376 2.4456 15 6 2.1258 -0.6264 3.6671 16 6 1.7024 0.1911 4.8892 17 6 2.1959 -0.5007 6.1615 18 1 1.8342 -1.5288 6.1798 19 8 3.6248 -0.4980 6.1815 20 6 1.6753 0.2365 7.3684 21 6 2.3049 1.3894 7.7987 22 6 1.8247 2.0680 8.9032 23 6 0.7205 1.5887 9.5827 24 6 0.0941 0.4329 9.1555 25 6 0.5716 -0.2433 8.0484 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 3.1263 -0.7994 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 2.9221 -1.8427 -4.7318 32 1 3.1263 -0.7993 1.2056 33 1 1.6055 -1.7197 1.2952 34 1 1.9882 0.9874 2.3966 35 1 3.2127 -0.7036 3.6400 36 1 1.6921 -1.6244 3.7301 37 1 0.6154 0.2679 4.9162 38 1 2.1357 1.1893 4.8265 39 1 4.0167 0.3859 6.1669 40 1 3.1697 1.7621 7.2699 41 1 2.3139 2.9712 9.2369 42 1 0.3469 2.1174 10.4472 43 1 -0.7685 0.0581 9.6866 44 1 0.0820 -1.1461 7.7143 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877527549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:53 Heat of formation + Delta-G solvation = -73.855397 kcal Electronic energy + Delta-G solvation = -20473.594775 eV Core-core repulsion = 17388.606918 eV Total energy + Delta-G solvation = -3084.987857 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.61023 -38.65895 -37.83519 -35.79154 -34.15135 -32.82064 -31.74147 -30.86556 -28.78062 -27.09242 -25.67084 -24.04925 -23.52358 -22.73416 -21.87972 -20.72085 -18.53388 -18.44721 -17.10839 -16.87816 -16.66109 -16.46605 -16.13335 -15.61702 -15.38619 -15.22395 -14.74104 -14.40657 -14.25715 -14.13962 -13.89673 -13.71541 -13.32135 -13.18977 -12.80098 -12.75098 -12.65772 -12.54961 -12.21562 -12.09153 -12.02654 -11.86387 -11.77336 -11.47738 -11.15302 -11.06703 -10.80692 -10.54254 -9.82048 -9.64562 -9.32521 -8.17552 -6.26760 0.40806 0.50071 1.40129 1.40449 1.53743 2.42065 2.82181 3.15763 3.19614 3.54889 3.70828 3.91591 4.07713 4.12942 4.16949 4.23630 4.28492 4.33060 4.45999 4.50884 4.54540 4.65431 4.71968 4.80937 4.89502 4.91491 5.02364 5.07366 5.11311 5.18919 5.19871 5.29184 5.46559 5.50908 5.56041 5.56416 5.62777 5.66480 5.81138 5.88771 6.06585 6.11023 6.31199 6.51364 6.74618 6.89517 7.41523 8.94789 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.041407 B = 0.002343 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.052192 B =11948.253887 C =12142.316710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 H 0.055 0.945 4 C 0.031 3.969 5 C -0.527 4.527 6 H 0.062 0.938 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.963 3.037 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.077 3.923 14 N -0.685 5.685 15 C 0.063 3.937 16 C -0.128 4.128 17 C 0.154 3.846 18 H 0.104 0.896 19 O -0.569 6.569 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.130 4.130 24 C -0.128 4.128 25 C -0.125 4.125 26 H 0.034 0.966 27 H 0.067 0.933 28 H 0.038 0.962 29 H -0.015 1.015 30 H -0.011 1.011 31 H 0.262 0.738 32 H 0.016 0.984 33 H 0.059 0.941 34 H 0.343 0.657 35 H 0.029 0.971 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.385 0.615 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.966 6.721 27.935 28.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 H 0.073 0.927 4 C -0.007 4.007 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.202 4.202 8 N -0.577 5.577 9 Si 0.788 3.212 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.052 4.052 14 N -0.316 5.316 15 C -0.066 4.066 16 C -0.166 4.166 17 C 0.095 3.905 18 H 0.122 0.878 19 O -0.377 6.377 20 C -0.125 4.125 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.148 4.148 24 C -0.146 4.146 25 C -0.143 4.143 26 H 0.053 0.947 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.004 0.996 30 H 0.007 0.993 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.161 0.839 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.234 0.766 40 H 0.152 0.848 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.611 5.687 27.862 28.665 hybrid contribution 1.014 0.729 -1.213 1.741 sum -2.598 6.416 26.649 27.533 Atomic orbital electron populations 1.21484 0.94648 1.00338 1.00548 1.21012 0.96750 0.98429 0.93079 0.92679 1.19032 0.94077 0.94722 0.92871 1.21665 1.34291 1.08525 0.92007 0.92009 1.25989 0.95316 0.96151 1.02767 1.70114 1.40414 1.22969 1.24217 0.85426 0.78052 0.78873 0.78873 1.18497 1.20537 1.20557 1.21838 0.96436 0.97343 0.89627 1.60490 1.64044 1.05900 1.01159 1.21885 0.97444 0.98140 0.89118 1.22114 1.02609 0.99278 0.92598 1.20744 0.80317 0.99345 0.90105 0.87835 1.86614 1.19161 1.35042 1.96864 1.20627 0.97133 0.96813 0.97920 1.21146 1.00408 0.94915 0.97654 1.21441 0.96965 1.00479 0.95609 1.21513 0.96149 0.96616 1.00537 1.21449 1.00531 0.95821 0.96782 1.21266 0.96417 1.00663 0.96001 0.94726 0.91400 0.94308 0.99631 0.99259 0.92958 0.96594 0.92255 0.83931 0.95276 0.91777 0.90255 0.90707 0.76551 0.84775 0.84192 0.84193 0.84302 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.36 8.89 71.98 0.64 -3.72 16 2 C -0.07 -3.06 2.48 -10.80 -0.03 -3.08 16 3 H 0.05 2.25 8.14 -2.38 -0.02 2.24 16 4 C 0.03 1.64 4.45 29.84 0.13 1.77 16 5 C -0.53 -30.13 8.41 25.60 0.22 -29.91 16 6 H 0.06 3.40 7.06 -2.91 -0.02 3.38 16 7 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 8 N -0.94 -57.94 13.29 21.45 0.28 -57.65 16 9 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 10 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 13 C 0.08 2.70 5.07 86.30 0.44 3.14 16 14 N -0.69 -19.01 5.96 -513.90 -3.06 -22.07 16 15 C 0.06 1.48 5.58 86.30 0.48 1.96 16 16 C -0.13 -2.29 5.13 30.59 0.16 -2.13 16 17 C 0.15 2.64 3.21 29.85 0.10 2.74 16 18 H 0.10 1.82 8.00 -2.39 -0.02 1.81 16 19 O -0.57 -10.53 12.72 -148.98 -1.90 -12.43 16 20 C -0.12 -2.05 4.97 -19.87 -0.10 -2.15 16 21 C -0.12 -1.79 9.32 22.27 0.21 -1.58 16 22 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 23 C -0.13 -1.68 10.05 22.27 0.22 -1.46 16 24 C -0.13 -1.77 10.05 22.27 0.22 -1.55 16 25 C -0.13 -1.98 9.67 22.27 0.22 -1.76 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 2.26 7.75 -2.39 -0.02 2.25 16 28 H 0.04 1.59 6.95 -2.39 -0.02 1.57 16 29 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 30 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 32 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.34 8.77 8.73 -89.70 -0.78 7.99 16 35 H 0.03 0.72 7.82 -2.39 -0.02 0.70 16 36 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 39 H 0.38 4.60 7.50 -74.05 -0.56 4.05 16 40 H 0.13 1.40 6.78 -2.91 -0.02 1.38 16 41 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.14 1.17 8.06 -2.91 -0.02 1.14 16 43 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 44 H 0.13 1.74 8.04 -2.91 -0.02 1.72 16 Total: -1.00 -67.88 360.00 0.58 -67.30 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -0.37 Total: 16.96 kcal Atomic # 6 Polarization: -42.62 SS G_CDS: 3.59 Total: -39.03 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -2.78 Total: -79.72 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -1.90 Total: -12.43 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.88 0.58 -67.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877527549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.555 kcal (2) G-P(sol) polarization free energy of solvation -67.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds