Wall clock time and date at job start Mon Mar 30 2020 01:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47059 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47439 * 180.02562 * 16 15 14 18 18 H 1.09005 * 109.46842 * 55.00047 * 17 16 15 19 19 O 1.42896 * 109.46776 * 295.00156 * 17 16 15 20 20 C 1.50699 * 109.47279 * 175.00113 * 17 16 15 21 21 C 1.38233 * 120.00021 * 84.72746 * 20 17 16 22 22 C 1.38240 * 119.99881 * 179.79219 * 21 20 17 23 23 C 1.38236 * 119.99655 * 0.43170 * 22 21 20 24 24 C 1.38238 * 120.00258 * 359.82266 * 23 22 21 25 25 C 1.38233 * 120.00003 * 359.96937 * 24 23 22 26 26 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 28 28 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 29 29 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 30 30 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 31 31 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 32 32 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 33 33 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 34 34 H 1.00902 * 110.99988 * 303.95038 * 14 13 2 35 35 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 36 36 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 37 37 H 1.09008 * 109.47237 * 300.00217 * 16 15 14 38 38 H 1.08999 * 109.47484 * 59.99634 * 16 15 14 39 39 H 0.96699 * 114.00205 * 299.99750 * 19 17 16 40 40 H 1.07998 * 120.00185 * 359.97438 * 21 20 17 41 41 H 1.07990 * 119.99922 * 180.27453 * 22 21 20 42 42 H 1.08005 * 119.99452 * 179.83439 * 23 22 21 43 43 H 1.08002 * 119.99705 * 179.97438 * 24 23 22 44 44 H 1.07995 * 119.99736 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7025 0.1904 -4.8892 17 6 2.1961 -0.5015 -6.1614 18 1 1.8342 -1.5296 -6.1795 19 8 3.6249 -0.4989 -6.1813 20 6 1.6755 0.2356 -7.3684 21 6 2.3579 1.3352 -7.8541 22 6 1.8827 2.0088 -8.9639 23 6 0.7203 1.5879 -9.5824 24 6 0.0350 0.4914 -9.0935 25 6 0.5125 -0.1847 -7.9864 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.1263 -0.7995 1.2057 30 1 1.6053 -1.7197 1.2953 31 1 2.9286 -2.0221 3.0617 32 1 3.1263 -0.7997 -1.2054 33 1 1.6053 -1.7200 -1.2950 34 1 0.6529 0.1791 -2.4753 35 1 3.2127 -0.7042 -3.6399 36 1 1.6921 -1.6250 -3.7299 37 1 0.6155 0.2673 -4.9162 38 1 2.1358 1.1886 -4.8266 39 1 4.0169 0.3849 -6.1669 40 1 3.2639 1.6664 -7.3684 41 1 2.4182 2.8651 -9.3460 42 1 0.3476 2.1158 -10.4479 43 1 -0.8734 0.1630 -9.5766 44 1 -0.0230 -1.0411 -7.6042 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877527550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:56 Heat of formation + Delta-G solvation = -57.202876 kcal Electronic energy + Delta-G solvation = -20512.863197 eV Core-core repulsion = 17428.597448 eV Total energy + Delta-G solvation = -3084.265750 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.02493 -37.74159 -36.80467 -34.42344 -32.59571 -31.83789 -31.20437 -29.80740 -26.55261 -26.01203 -24.35170 -22.96602 -22.45803 -21.76192 -21.23895 -19.18742 -17.90641 -16.76178 -16.42473 -16.23615 -15.60189 -15.52174 -14.69336 -14.47161 -14.06352 -13.76883 -13.71289 -13.59228 -13.48541 -13.24711 -12.78805 -12.36436 -12.16572 -11.95145 -11.64418 -11.53009 -11.37154 -11.14237 -11.11171 -10.95697 -10.66825 -10.43466 -10.14994 -10.04978 -9.82780 -9.43159 -9.28331 -9.06499 -8.45100 -8.27674 -8.19416 -6.30082 -3.98069 0.96402 1.03823 3.38558 3.46588 3.48774 3.67278 4.08038 4.17482 4.47014 4.49314 4.59572 4.64093 4.75065 4.86115 5.01076 5.07245 5.12181 5.26252 5.42742 5.46297 5.57172 5.60863 5.65227 5.70386 5.71742 5.94751 5.96361 6.04237 6.09149 6.15249 6.18815 6.24033 6.38947 6.48082 6.62096 6.83397 7.03167 7.05196 7.28347 7.32635 7.45280 7.57843 7.65902 8.29293 8.52705 8.94972 9.73392 11.10317 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.041239 B = 0.002351 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.805727 B =11904.866385 C =12110.925868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 H 0.066 0.934 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.049 0.951 7 C 0.011 3.989 8 N -0.916 5.916 9 Si 1.068 2.932 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.064 3.936 14 N -0.691 5.691 15 C 0.061 3.939 16 C -0.142 4.142 17 C 0.148 3.852 18 H 0.106 0.894 19 O -0.553 6.553 20 C -0.112 4.112 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.112 4.112 26 H 0.039 0.961 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.006 0.994 30 H 0.005 0.995 31 H 0.268 0.732 32 H 0.066 0.934 33 H 0.022 0.978 34 H 0.336 0.664 35 H 0.077 0.923 36 H 0.025 0.975 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.374 0.626 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.734 4.667 -27.135 27.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.096 4.096 3 H 0.085 0.915 4 C -0.023 4.023 5 C -0.632 4.632 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.552 5.552 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.065 4.065 14 N -0.323 5.323 15 C -0.068 4.068 16 C -0.180 4.180 17 C 0.088 3.912 18 H 0.124 0.876 19 O -0.359 6.359 20 C -0.112 4.112 21 C -0.130 4.130 22 C -0.135 4.135 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.130 4.130 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.024 0.976 30 H 0.023 0.977 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.155 0.845 35 H 0.095 0.905 36 H 0.043 0.957 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.222 0.778 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.192 4.448 -25.445 26.027 hybrid contribution -0.749 -0.142 -1.811 1.965 sum -3.941 4.307 -27.255 27.873 Atomic orbital electron populations 1.21730 0.96506 1.00395 1.00418 1.21085 0.94985 1.00001 0.93561 0.91529 1.19243 0.95375 0.95416 0.92292 1.22029 1.38624 1.10251 0.92275 0.93229 1.25834 0.94768 0.97173 1.01396 1.70778 1.36276 1.14699 1.33482 0.83562 0.75995 0.75168 0.75648 1.20868 1.21484 1.21538 1.22137 1.00299 0.94385 0.89637 1.60558 1.19452 1.50695 1.01586 1.21885 1.01253 0.94622 0.89085 1.22259 1.01839 1.00406 0.93541 1.20836 0.80821 0.99321 0.90176 0.87593 1.86627 1.18567 1.33883 1.96819 1.20616 0.96090 0.96654 0.97838 1.20895 0.99887 0.95277 0.96923 1.21139 0.96542 0.99846 0.95962 1.21186 0.95698 0.97134 1.00119 1.21161 0.99923 0.95935 0.96597 1.21008 0.95892 1.00124 0.95981 0.94137 0.91726 0.94833 0.97585 0.97694 0.92188 0.91548 0.95940 0.84518 0.90459 0.95714 0.91076 0.90503 0.77753 0.86110 0.85940 0.86084 0.85958 0.85908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.77 37.16 0.33 -2.22 16 2 C -0.08 -1.62 2.55 -90.62 -0.23 -1.85 16 3 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 4 C 0.01 0.37 3.76 -27.88 -0.10 0.26 16 5 C -0.59 -17.01 8.41 -34.44 -0.29 -17.30 16 6 H 0.05 1.40 7.06 -52.49 -0.37 1.03 16 7 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 8 N -0.92 -28.54 13.65 55.43 0.76 -27.79 16 9 Si 1.07 25.70 29.90 -169.99 -5.08 20.61 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 13 C 0.06 1.14 5.14 -3.82 -0.02 1.12 16 14 N -0.69 -10.30 6.50 -113.78 -0.74 -11.04 16 15 C 0.06 0.76 5.58 -3.82 -0.02 0.74 16 16 C -0.14 -1.40 5.13 -26.73 -0.14 -1.54 16 17 C 0.15 1.35 3.21 -27.88 -0.09 1.26 16 18 H 0.11 0.96 8.05 -51.93 -0.42 0.54 16 19 O -0.55 -5.49 12.67 -35.23 -0.45 -5.93 16 20 C -0.11 -0.98 5.00 -104.62 -0.52 -1.51 16 21 C -0.11 -0.91 9.33 -39.58 -0.37 -1.28 16 22 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 23 C -0.12 -0.91 10.05 -39.58 -0.40 -1.30 16 24 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 25 C -0.11 -0.93 9.68 -39.58 -0.38 -1.31 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.34 6.95 -51.93 -0.36 0.98 16 28 H 0.03 0.53 6.68 -51.93 -0.35 0.19 16 29 H 0.01 0.16 8.01 -51.93 -0.42 -0.25 16 30 H 0.00 0.13 8.00 -51.93 -0.42 -0.28 16 31 H 0.27 8.33 7.22 -40.82 -0.29 8.03 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.34 4.73 6.98 -39.29 -0.27 4.45 16 35 H 0.08 1.03 7.82 -51.93 -0.41 0.62 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.37 2.60 7.40 45.56 0.34 2.93 16 40 H 0.12 0.77 6.62 -52.49 -0.35 0.42 16 41 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 43 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 356.24 15.07 5.37 5.37 Total: -1.00 -32.39 356.24 -10.04 -42.43 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.76 Total: 3.61 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: -3.13 Total: -27.26 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.02 Total: -38.82 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.45 Total: -5.93 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.61 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.39 -10.04 -42.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877527550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.772 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds