Wall clock time and date at job start Mon Mar 30 2020 01:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 6 6 H 1.07996 * 119.99521 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00339 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00003 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00392 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47090 * 59.99390 * 9 7 5 11 11 H 1.48494 * 109.47443 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46898 * 299.99772 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 N 1.46895 * 109.46799 * 294.99463 * 13 2 1 15 15 C 1.46907 * 111.00034 * 179.97438 * 14 13 2 16 16 H 1.08999 * 109.46606 * 325.00308 * 15 14 13 17 17 C 1.52992 * 109.46880 * 85.00439 * 15 14 13 18 18 C 1.53003 * 109.47026 * 205.00526 * 15 14 13 19 19 H 1.08997 * 109.47402 * 54.99944 * 18 15 14 20 20 O 1.42904 * 109.47092 * 294.99567 * 18 15 14 21 21 C 1.50704 * 109.46791 * 175.00058 * 18 15 14 22 22 C 1.38236 * 120.00064 * 84.72282 * 21 18 15 23 23 C 1.38233 * 120.00175 * 179.81011 * 22 21 18 24 24 C 1.38236 * 119.99541 * 0.39816 * 23 22 21 25 25 C 1.38234 * 120.00092 * 359.85837 * 24 23 22 26 26 C 1.38231 * 119.99821 * 265.00075 * 21 18 15 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 31 31 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 32 32 H 0.96995 * 120.00234 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47326 * 54.99931 * 13 2 1 34 34 H 1.09000 * 109.46904 * 175.00284 * 13 2 1 35 35 H 1.00909 * 110.99954 * 56.04982 * 14 13 2 36 36 H 1.09005 * 109.46884 * 299.99993 * 17 15 14 37 37 H 1.09002 * 109.47360 * 60.00031 * 17 15 14 38 38 H 1.09002 * 109.47252 * 180.02562 * 17 15 14 39 39 H 0.96691 * 113.99876 * 300.01072 * 20 18 15 40 40 H 1.08001 * 119.99530 * 0.02562 * 22 21 18 41 41 H 1.07997 * 120.00197 * 180.23616 * 23 22 21 42 42 H 1.08005 * 119.99765 * 179.83607 * 24 23 22 43 43 H 1.08008 * 119.99647 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.00371 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6756 -1.5194 -3.8512 9 14 1.4989 0.5628 -5.2497 10 1 2.0920 1.9228 -5.1871 11 1 1.9938 -0.1373 -6.4621 12 1 0.0190 0.6704 -5.3090 13 6 2.0400 -0.7213 1.2493 14 7 1.6515 0.0374 2.4456 15 6 2.1248 -0.6271 3.6673 16 1 2.0807 -1.7079 3.5332 17 6 3.5684 -0.2067 3.9498 18 6 1.2359 -0.2226 4.8450 19 1 0.1950 -0.4414 4.6066 20 8 1.3834 1.1768 5.0945 21 6 1.6439 -0.9973 6.0716 22 6 2.6819 -0.5421 6.8630 23 6 3.0536 -1.2505 7.9903 24 6 2.3927 -2.4186 8.3215 25 6 1.3583 -2.8766 7.5272 26 6 0.9840 -2.1661 6.4020 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1263 -0.7996 -1.2055 31 1 1.6054 -1.7198 -1.2952 32 1 2.9228 -1.8423 -4.7318 33 1 1.6054 -1.7199 1.2952 34 1 3.1263 -0.7995 1.2056 35 1 0.6528 0.1793 2.4753 36 1 4.2017 -0.4949 3.1107 37 1 3.6125 0.8742 4.0838 38 1 3.9198 -0.7001 4.8560 39 1 2.2865 1.4441 5.3135 40 1 3.2000 0.3690 6.6025 41 1 3.8620 -0.8929 8.6107 42 1 2.6849 -2.9736 9.2008 43 1 0.8423 -3.7895 7.7858 44 1 0.1758 -2.5239 5.7815 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877536306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:27 Heat of formation + Delta-G solvation = -45.321786 kcal Electronic energy + Delta-G solvation = -21282.279118 eV Core-core repulsion = 18198.528571 eV Total energy + Delta-G solvation = -3083.750547 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.17393 -37.93985 -36.32468 -34.04277 -32.31071 -31.54045 -31.17734 -29.24702 -26.88559 -26.69590 -25.07818 -22.85503 -22.65453 -21.57997 -20.36807 -18.96518 -17.92474 -16.63243 -16.21193 -15.96768 -15.68324 -15.27587 -14.65270 -14.50681 -14.18722 -13.93322 -13.67180 -13.24010 -12.97489 -12.85862 -12.43818 -12.36380 -12.02165 -11.87689 -11.71905 -11.49600 -11.35659 -11.24395 -11.06267 -10.85745 -10.71219 -10.35802 -10.18724 -10.06403 -9.68965 -9.18734 -9.13852 -8.99546 -8.90295 -8.30767 -8.11107 -5.95645 -3.96764 1.04627 1.12181 3.36057 3.40206 3.42943 3.46626 4.13459 4.34413 4.49616 4.55704 4.67806 4.68898 4.81051 4.85545 4.97169 5.20921 5.27951 5.34926 5.40032 5.59369 5.66097 5.72709 5.76868 5.80377 5.85661 5.91485 6.08458 6.16805 6.21447 6.23293 6.29034 6.34289 6.50015 6.59852 6.70308 6.97551 7.13701 7.20057 7.37208 7.49178 7.69458 7.72407 7.88454 8.04729 8.48691 9.09471 9.66513 11.15899 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.039232 B = 0.002867 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.524856 B = 9763.261084 C = 9871.446677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.677 5.677 15 C 0.057 3.943 16 H 0.049 0.951 17 C -0.149 4.149 18 C 0.147 3.853 19 H 0.104 0.896 20 O -0.543 6.543 21 C -0.109 4.109 22 C -0.109 4.109 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.118 4.118 26 C -0.111 4.111 27 H 0.062 0.938 28 H 0.032 0.968 29 H 0.040 0.960 30 H 0.014 0.986 31 H 0.013 0.987 32 H 0.260 0.740 33 H 0.022 0.978 34 H 0.066 0.934 35 H 0.340 0.660 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.372 0.628 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.653 -1.065 24.428 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.310 5.310 15 C -0.054 4.054 16 H 0.067 0.933 17 C -0.207 4.207 18 C 0.087 3.913 19 H 0.122 0.878 20 O -0.350 6.350 21 C -0.110 4.110 22 C -0.127 4.127 23 C -0.137 4.137 24 C -0.141 4.141 25 C -0.136 4.136 26 C -0.129 4.129 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.084 0.916 35 H 0.160 0.840 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.221 0.779 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.672 -0.757 24.123 24.144 hybrid contribution -0.195 -0.508 -0.781 0.952 sum -0.867 -1.265 23.342 23.392 Atomic orbital electron populations 1.21741 0.96704 1.00352 1.00341 1.21213 0.94852 1.00112 0.94069 0.91607 1.19102 0.96079 0.95328 0.90394 1.21210 1.34637 1.08263 0.90997 0.92603 1.25020 0.95350 0.95094 0.99090 1.69957 1.39091 1.21255 1.23462 0.86687 0.78857 0.80159 0.82470 1.20261 1.21395 1.20309 1.22206 1.00325 0.94252 0.89631 1.60570 1.19740 1.50092 1.00586 1.22111 0.95789 0.96992 0.90459 0.93287 1.21899 0.95473 1.01706 1.01603 1.20998 0.99580 0.80850 0.89890 0.87780 1.86621 1.34144 1.22083 1.92107 1.20563 0.96558 0.96368 0.97463 1.20916 0.96717 0.99994 0.95043 1.21129 0.99985 0.95519 0.97052 1.21171 0.96443 0.96669 0.99811 1.21148 0.97508 0.99843 0.95141 1.21016 0.99895 0.94769 0.97254 0.91869 0.94884 0.94112 0.96729 0.96823 0.93062 0.95979 0.91556 0.84013 0.91873 0.91899 0.92414 0.77887 0.86037 0.85980 0.86140 0.85988 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.77 37.16 0.33 -2.21 16 2 C -0.08 -1.73 2.55 -90.62 -0.23 -1.96 16 3 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 4 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.49 8.41 -34.44 -0.29 -14.78 16 6 H 0.06 1.54 7.05 -52.49 -0.37 1.17 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.06 1.13 4.94 -3.82 -0.02 1.11 16 14 N -0.68 -9.98 6.26 -106.72 -0.67 -10.64 16 15 C 0.06 0.69 2.48 -67.71 -0.17 0.53 16 16 H 0.05 0.63 7.80 -51.93 -0.40 0.23 16 17 C -0.15 -1.68 8.31 37.15 0.31 -1.37 16 18 C 0.15 1.59 2.97 -27.88 -0.08 1.50 16 19 H 0.10 1.12 7.93 -51.93 -0.41 0.71 16 20 O -0.54 -6.28 12.98 -35.23 -0.46 -6.74 16 21 C -0.11 -1.08 4.73 -104.62 -0.49 -1.57 16 22 C -0.11 -0.97 7.38 -39.58 -0.29 -1.26 16 23 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 24 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 25 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 26 C -0.11 -1.05 9.68 -39.59 -0.38 -1.43 16 27 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 28 H 0.03 0.53 6.68 -51.93 -0.35 0.18 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 34 H 0.07 1.20 7.44 -51.93 -0.39 0.82 16 35 H 0.34 4.90 6.53 -39.29 -0.26 4.65 16 36 H 0.06 0.80 7.45 -51.93 -0.39 0.41 16 37 H 0.06 0.67 6.72 -51.93 -0.35 0.32 16 38 H 0.06 0.56 5.91 -51.93 -0.31 0.26 16 39 H 0.37 3.37 5.54 45.56 0.25 3.62 16 40 H 0.12 0.89 6.16 -52.49 -0.32 0.57 16 41 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 43 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 44 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 346.97 15.07 5.23 5.23 Total: -1.00 -31.20 346.97 -9.51 -40.71 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.59 Total: 4.55 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -2.74 Total: -23.49 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.07 Total: -37.12 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.46 Total: -6.74 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.20 -9.51 -40.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877536306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.617 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds