Wall clock time and date at job start Mon Mar 30 2020 01:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 6 6 H 1.07996 * 119.99521 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00339 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00003 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00392 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47090 * 59.99390 * 9 7 5 11 11 H 1.48494 * 109.47443 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46898 * 299.99772 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 N 1.46895 * 109.46799 * 294.99463 * 13 2 1 15 15 C 1.46907 * 111.00034 * 179.97438 * 14 13 2 16 16 H 1.08994 * 109.46605 * 35.00289 * 15 14 13 17 17 C 1.53005 * 109.46965 * 275.00332 * 15 14 13 18 18 C 1.52996 * 109.46913 * 155.00298 * 15 14 13 19 19 H 1.09004 * 109.46834 * 184.99756 * 18 15 14 20 20 O 1.42904 * 109.47152 * 65.00421 * 18 15 14 21 21 C 1.50697 * 109.47400 * 304.99820 * 18 15 14 22 22 C 1.38236 * 119.99611 * 84.72884 * 21 18 15 23 23 C 1.38237 * 119.99794 * 179.81073 * 22 21 18 24 24 C 1.38236 * 119.99893 * 0.39825 * 23 22 21 25 25 C 1.38231 * 119.99875 * 359.85300 * 24 23 22 26 26 C 1.38231 * 120.00319 * 359.96061 * 25 24 23 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 31 31 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 32 32 H 0.96995 * 120.00234 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47326 * 54.99931 * 13 2 1 34 34 H 1.09000 * 109.46904 * 175.00284 * 13 2 1 35 35 H 1.00900 * 111.00812 * 303.95845 * 14 13 2 36 36 H 1.08997 * 109.46923 * 60.00001 * 17 15 14 37 37 H 1.09002 * 109.46631 * 179.97438 * 17 15 14 38 38 H 1.08998 * 109.47171 * 299.99906 * 17 15 14 39 39 H 0.96697 * 114.00139 * 299.99570 * 20 18 15 40 40 H 1.08005 * 120.00094 * 0.02562 * 22 21 18 41 41 H 1.07998 * 120.00141 * 180.23332 * 23 22 21 42 42 H 1.08006 * 119.99589 * 179.83411 * 24 23 22 43 43 H 1.08004 * 119.99473 * 179.97438 * 25 24 23 44 44 H 1.08001 * 119.99999 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6756 -1.5194 -3.8512 9 14 1.4989 0.5628 -5.2497 10 1 2.0920 1.9228 -5.1871 11 1 1.9938 -0.1373 -6.4621 12 1 0.0190 0.6704 -5.3090 13 6 2.0400 -0.7213 1.2493 14 7 1.6515 0.0374 2.4456 15 6 2.1248 -0.6271 3.6673 16 1 3.0883 -1.0988 3.4742 17 6 1.1120 -1.6918 4.0938 18 6 2.2780 0.4075 4.7839 19 1 2.7128 -0.0684 5.6629 20 8 0.9953 0.9421 5.1172 21 6 3.1804 1.5205 4.3172 22 6 2.6594 2.5726 3.5875 23 6 3.4865 3.5956 3.1627 24 6 4.8359 3.5623 3.4606 25 6 5.3577 2.5075 4.1859 26 6 4.5301 1.4865 4.6139 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1263 -0.7996 -1.2055 31 1 1.6054 -1.7198 -1.2952 32 1 2.9228 -1.8423 -4.7318 33 1 1.6054 -1.7199 1.2952 34 1 3.1263 -0.7995 1.2056 35 1 1.9882 0.9873 2.3967 36 1 1.0029 -2.4288 3.2982 37 1 1.4635 -2.1852 5.0000 38 1 0.1486 -1.2201 4.2868 39 1 0.5488 1.3815 4.3805 40 1 1.6056 2.5971 3.3522 41 1 3.0788 4.4195 2.5958 42 1 5.4825 4.3602 3.1264 43 1 6.4122 2.4814 4.4182 44 1 4.9379 0.6623 5.1802 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877536310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:29 Heat of formation + Delta-G solvation = -64.363355 kcal Electronic energy + Delta-G solvation = -21902.234556 eV Core-core repulsion = 18817.658304 eV Total energy + Delta-G solvation = -3084.576252 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.03842 -38.77582 -37.57916 -35.53675 -34.08810 -32.33730 -31.84838 -30.90548 -28.71371 -27.17021 -26.54554 -24.51618 -23.48273 -22.56776 -21.36261 -20.77314 -18.65370 -18.46930 -17.24414 -16.97557 -16.57839 -16.51530 -16.15368 -15.50757 -15.31264 -15.12819 -14.56666 -14.40153 -14.22998 -14.06116 -13.76527 -13.43722 -13.16639 -13.13622 -13.00097 -12.80214 -12.71306 -12.59214 -12.33719 -12.18909 -12.08547 -11.93434 -11.77963 -11.48298 -11.11902 -11.00792 -10.80567 -10.53137 -9.87524 -9.68219 -9.36464 -8.17329 -6.26735 0.35832 0.45083 1.40105 1.42882 1.50548 2.42026 2.77883 3.16007 3.18336 3.52945 3.62028 3.84855 3.94354 4.10847 4.16880 4.24580 4.29084 4.39757 4.47267 4.50091 4.55334 4.65512 4.79569 4.80970 4.89795 4.98198 5.01125 5.03569 5.08392 5.11479 5.29043 5.43848 5.46084 5.51074 5.52459 5.54773 5.58832 5.59794 5.80542 5.87968 6.02567 6.06970 6.30399 6.45672 6.71910 6.88861 7.41599 8.94654 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017786 B = 0.004293 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.925309 B = 6521.002979 C = 7359.827904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.072 4.072 3 H 0.050 0.950 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.062 0.938 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.080 3.920 14 N -0.680 5.680 15 C 0.053 3.947 16 H 0.045 0.955 17 C -0.128 4.128 18 C 0.157 3.843 19 H 0.122 0.878 20 O -0.556 6.556 21 C -0.133 4.133 22 C -0.128 4.128 23 C -0.126 4.126 24 C -0.130 4.130 25 C -0.126 4.126 26 C -0.123 4.123 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.034 0.966 30 H -0.018 1.018 31 H -0.011 1.011 32 H 0.262 0.738 33 H 0.063 0.937 34 H 0.010 0.990 35 H 0.341 0.659 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.384 0.616 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.753 7.488 19.395 20.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 H 0.068 0.932 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.191 1.191 13 C -0.049 4.049 14 N -0.316 5.316 15 C -0.057 4.057 16 H 0.063 0.937 17 C -0.186 4.186 18 C 0.097 3.903 19 H 0.140 0.860 20 O -0.363 6.363 21 C -0.134 4.134 22 C -0.146 4.146 23 C -0.144 4.144 24 C -0.148 4.148 25 C -0.144 4.144 26 C -0.141 4.141 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.001 0.999 31 H 0.008 0.992 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.028 0.972 35 H 0.164 0.836 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.234 0.766 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.160 0.840 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.341 6.859 19.893 21.085 hybrid contribution 0.984 0.440 -1.880 2.167 sum 2.324 7.299 18.013 19.575 Atomic orbital electron populations 1.21479 0.94361 1.00439 1.00642 1.20988 0.96911 0.98119 0.93061 0.93191 1.19000 0.93873 0.94721 0.92849 1.21596 1.34480 1.08594 0.92001 0.92028 1.25952 0.95228 0.96073 1.02650 1.70100 1.40283 1.22983 1.24322 0.85566 0.78986 0.78764 0.78143 1.19234 1.21054 1.19149 1.21855 0.95982 0.97554 0.89553 1.60696 1.63905 1.06215 1.00784 1.22247 0.97547 0.95598 0.90285 0.93738 1.21636 0.99485 0.97014 1.00484 1.20959 0.82639 0.89604 0.97086 0.86039 1.86516 1.31245 1.77136 1.41418 1.20741 0.95682 0.97397 0.99554 1.21133 1.00750 0.94441 0.98247 1.21454 0.94277 0.99035 0.99654 1.21524 0.95723 0.99205 0.98304 1.21469 1.00823 0.94152 0.97978 1.21262 0.92880 0.99502 1.00487 0.94332 0.91151 0.94660 0.99940 0.99221 0.92962 0.91902 0.97177 0.83554 0.93792 0.91211 0.91642 0.76618 0.84875 0.84492 0.84283 0.84039 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.23 8.89 71.98 0.64 -3.59 16 2 C -0.07 -2.96 2.48 -10.79 -0.03 -2.98 16 3 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 4 C 0.03 1.77 4.45 29.85 0.13 1.90 16 5 C -0.53 -30.05 8.41 25.60 0.22 -29.84 16 6 H 0.06 3.35 7.05 -2.91 -0.02 3.33 16 7 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 8 N -0.94 -57.67 13.29 21.45 0.28 -57.39 16 9 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 C 0.08 2.79 4.87 86.31 0.42 3.21 16 14 N -0.68 -18.50 5.36 -491.56 -2.63 -21.14 16 15 C 0.05 1.24 2.54 44.91 0.11 1.36 16 16 H 0.04 1.10 7.80 -2.39 -0.02 1.09 16 17 C -0.13 -2.85 9.22 71.98 0.66 -2.19 16 18 C 0.16 3.16 3.15 29.85 0.09 3.25 16 19 H 0.12 2.12 8.05 -2.38 -0.02 2.10 16 20 O -0.56 -11.83 12.26 -148.98 -1.83 -13.66 16 21 C -0.13 -2.81 4.64 -19.87 -0.09 -2.90 16 22 C -0.13 -2.70 7.21 22.27 0.16 -2.54 16 23 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 24 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 25 C -0.13 -2.37 10.05 22.27 0.22 -2.14 16 26 C -0.12 -2.42 9.68 22.27 0.22 -2.21 16 27 H 0.04 1.55 6.95 -2.39 -0.02 1.54 16 28 H 0.07 2.25 7.75 -2.39 -0.02 2.23 16 29 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 30 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 31 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 32 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.06 2.26 7.44 -2.39 -0.02 2.24 16 34 H 0.01 0.37 8.06 -2.39 -0.02 0.36 16 35 H 0.34 9.00 4.62 -89.69 -0.41 8.58 16 36 H 0.04 1.08 7.45 -2.39 -0.02 1.06 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.06 1.50 7.56 -2.39 -0.02 1.48 16 39 H 0.38 7.21 7.01 -74.06 -0.52 6.69 16 40 H 0.13 2.52 6.08 -2.91 -0.02 2.50 16 41 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 42 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 43 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 44 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -65.72 349.98 1.56 -64.15 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.04 Total: 24.37 kcal Atomic # 6 Polarization: -46.61 SS G_CDS: 3.67 Total: -42.94 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -2.35 Total: -78.52 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -1.83 Total: -13.66 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -65.72 1.56 -64.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877536310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.210 kcal (2) G-P(sol) polarization free energy of solvation -65.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds