Wall clock time and date at job start Mon Mar 30 2020 01:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46545 * 2 1 4 4 C 1.53004 * 109.47189 * 240.00300 * 2 1 3 5 5 C 1.50699 * 109.47164 * 64.99508 * 4 2 1 6 6 H 1.08006 * 119.99656 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00225 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99768 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00221 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46918 * 59.99670 * 9 7 5 11 11 H 1.48497 * 109.46919 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47081 * 299.99636 * 9 7 5 13 13 C 1.52993 * 109.47243 * 119.99979 * 2 1 3 14 14 N 1.46897 * 109.47330 * 295.00274 * 13 2 1 15 15 C 1.46900 * 111.00360 * 180.02562 * 14 13 2 16 16 H 1.08999 * 109.46881 * 34.99251 * 15 14 13 17 17 C 1.53005 * 109.46727 * 274.99817 * 15 14 13 18 18 C 1.52993 * 109.47645 * 155.00095 * 15 14 13 19 19 H 1.09003 * 109.47203 * 304.99531 * 18 15 14 20 20 O 1.42898 * 109.47517 * 64.99608 * 18 15 14 21 21 C 1.50702 * 109.47442 * 185.00023 * 18 15 14 22 22 C 1.38234 * 120.00271 * 99.99361 * 21 18 15 23 23 C 1.38230 * 119.99880 * 179.97438 * 22 21 18 24 24 C 1.38235 * 120.00326 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99814 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99485 * 279.97488 * 21 18 15 27 27 H 1.09007 * 109.46545 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47153 * 299.99464 * 1 2 3 29 29 H 1.08991 * 109.47533 * 59.99998 * 1 2 3 30 30 H 1.08991 * 109.46933 * 184.99640 * 4 2 1 31 31 H 1.08993 * 109.46902 * 304.99880 * 4 2 1 32 32 H 0.96993 * 120.00125 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47035 * 175.00468 * 13 2 1 34 34 H 1.08998 * 109.47605 * 55.00497 * 13 2 1 35 35 H 1.00908 * 111.00107 * 303.95090 * 14 13 2 36 36 H 1.08999 * 109.47274 * 179.97438 * 17 15 14 37 37 H 1.09000 * 109.47247 * 300.00108 * 17 15 14 38 38 H 1.09002 * 109.47046 * 59.99824 * 17 15 14 39 39 H 0.96700 * 114.00054 * 59.99589 * 20 18 15 40 40 H 1.08001 * 119.99769 * 359.97438 * 22 21 18 41 41 H 1.08000 * 120.00376 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.00616 * 179.72578 * 24 23 22 43 43 H 1.08001 * 120.00299 * 179.97438 * 25 24 23 44 44 H 1.07997 * 120.00489 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0805 0.9746 -2.3756 7 6 1.9923 -0.4021 -3.7284 8 7 2.6755 -1.5191 -3.8513 9 14 1.4986 0.5630 -5.2497 10 1 2.0916 1.9230 -5.1871 11 1 1.9935 -0.1371 -6.4622 12 1 0.0187 0.6705 -5.3090 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1258 -0.6265 3.6671 16 1 3.0896 -1.0976 3.4737 17 6 1.1141 -1.6918 4.0943 18 6 2.2787 0.4083 4.7836 19 1 2.9307 1.2138 4.4456 20 8 0.9959 0.9421 5.1173 21 6 2.8809 -0.2489 5.9987 22 6 4.2298 -0.1054 6.2651 23 6 4.7820 -0.7078 7.3800 24 6 3.9853 -1.4533 8.2288 25 6 2.6363 -1.5960 7.9630 26 6 2.0844 -0.9950 6.8471 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.1263 -0.7993 -1.2056 31 1 1.6055 -1.7197 -1.2952 32 1 2.9221 -1.8424 -4.7319 33 1 3.1263 -0.7993 1.2055 34 1 1.6056 -1.7198 1.2951 35 1 1.9882 0.9873 2.3967 36 1 1.4662 -2.1848 5.0004 37 1 0.1503 -1.2209 4.2876 38 1 1.0051 -2.4291 3.2989 39 1 0.3627 0.2800 5.4267 40 1 4.8521 0.4774 5.6022 41 1 5.8357 -0.5953 7.5885 42 1 4.4176 -1.9276 9.0975 43 1 2.0139 -2.1788 8.6258 44 1 1.0306 -1.1072 6.6389 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877536311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:33 Heat of formation + Delta-G solvation = -44.963396 kcal Electronic energy + Delta-G solvation = -21280.838205 eV Core-core repulsion = 18197.103199 eV Total energy + Delta-G solvation = -3083.735006 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.17982 -37.91721 -36.26238 -34.04910 -32.29663 -31.54391 -31.21155 -29.26798 -26.95648 -26.56419 -24.91252 -22.84642 -22.67664 -21.58252 -20.40755 -19.07576 -17.89701 -16.45420 -16.23770 -15.97445 -15.68815 -15.27282 -14.57129 -14.46785 -14.16930 -14.00982 -13.68910 -13.35828 -13.04972 -12.72479 -12.43582 -12.14367 -11.95554 -11.91363 -11.75016 -11.43134 -11.35228 -11.21942 -11.02176 -10.82315 -10.71390 -10.30515 -10.22997 -10.03946 -9.66545 -9.18595 -9.12964 -8.99888 -8.89268 -8.30682 -8.08849 -5.95632 -3.96675 1.04433 1.12110 3.36008 3.40101 3.42872 3.46466 4.13734 4.35958 4.49604 4.55038 4.67453 4.69033 4.80806 4.85192 4.97370 5.20855 5.28464 5.34102 5.40077 5.59469 5.66027 5.69973 5.77008 5.79380 5.86513 5.95105 6.15772 6.17721 6.22988 6.23757 6.34411 6.45851 6.58609 6.70278 6.73571 7.04993 7.22291 7.23233 7.37261 7.49249 7.68542 7.72781 7.87980 8.04753 8.48980 9.09598 9.66561 11.15952 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.037000 B = 0.002898 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.583727 B = 9659.046636 C = 9907.797180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.674 5.674 15 C 0.057 3.943 16 H 0.049 0.951 17 C -0.150 4.150 18 C 0.147 3.853 19 H 0.105 0.895 20 O -0.543 6.543 21 C -0.109 4.109 22 C -0.110 4.110 23 C -0.119 4.119 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.109 4.109 27 H 0.038 0.962 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.012 0.988 31 H 0.015 0.985 32 H 0.260 0.740 33 H 0.023 0.977 34 H 0.065 0.935 35 H 0.339 0.661 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.372 0.628 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.111 0.033 24.439 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.306 5.306 15 C -0.053 4.053 16 H 0.067 0.933 17 C -0.208 4.208 18 C 0.087 3.913 19 H 0.122 0.878 20 O -0.349 6.349 21 C -0.110 4.110 22 C -0.128 4.128 23 C -0.137 4.137 24 C -0.140 4.140 25 C -0.138 4.138 26 C -0.127 4.127 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.158 0.842 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.221 0.779 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.840 0.186 24.146 24.162 hybrid contribution 0.654 -0.024 -0.840 1.065 sum 1.494 0.162 23.306 23.354 Atomic orbital electron populations 1.21578 0.95686 1.00467 1.00194 1.21192 0.96048 0.98876 0.93954 0.92855 1.19112 0.95836 0.95551 0.90476 1.21211 1.34603 1.08266 0.91001 0.92606 1.25022 0.95348 0.95104 0.99088 1.69955 1.39113 1.21256 1.23454 0.86688 0.78919 0.80100 0.82473 1.20316 1.21391 1.20251 1.22216 0.96929 0.97793 0.89521 1.60525 1.63930 1.05486 1.00642 1.22103 0.97461 0.94915 0.90860 0.93297 1.21943 0.99204 0.98388 1.01265 1.20996 0.85182 0.95132 0.89969 0.87768 1.86624 1.22154 1.38332 1.87793 1.20565 0.94533 0.98520 0.97414 1.21034 0.94435 0.99831 0.97532 1.21150 0.99897 0.97707 0.94930 1.21172 0.94090 0.99147 0.99636 1.21134 0.95393 0.99894 0.97337 1.20954 0.99813 0.97238 0.94724 0.94295 0.93799 0.92859 0.97015 0.96623 0.93064 0.95925 0.91628 0.84232 0.92282 0.91906 0.91948 0.77942 0.85921 0.85988 0.86141 0.85986 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.08 16 2 C -0.08 -1.69 2.48 -90.62 -0.22 -1.91 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.52 8.41 -34.44 -0.29 -14.81 16 6 H 0.06 1.54 7.06 -52.48 -0.37 1.17 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 9 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.06 1.11 4.87 -3.83 -0.02 1.09 16 14 N -0.67 -9.72 5.71 -106.73 -0.61 -10.33 16 15 C 0.06 0.68 2.48 -67.71 -0.17 0.52 16 16 H 0.05 0.63 7.80 -51.93 -0.40 0.22 16 17 C -0.15 -1.65 8.16 37.16 0.30 -1.34 16 18 C 0.15 1.57 2.99 -27.89 -0.08 1.49 16 19 H 0.10 1.11 7.89 -51.93 -0.41 0.70 16 20 O -0.54 -6.21 13.03 -35.23 -0.46 -6.67 16 21 C -0.11 -1.08 4.82 -104.62 -0.50 -1.59 16 22 C -0.11 -1.04 9.67 -39.59 -0.38 -1.42 16 23 C -0.12 -1.01 10.05 -39.59 -0.40 -1.41 16 24 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 25 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 26 C -0.11 -0.97 7.30 -39.58 -0.29 -1.26 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.79 7.75 -51.93 -0.40 0.38 16 29 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 34 H 0.07 1.17 7.44 -51.93 -0.39 0.78 16 35 H 0.34 4.82 8.28 -39.29 -0.33 4.49 16 36 H 0.06 0.56 5.58 -51.93 -0.29 0.27 16 37 H 0.06 0.65 6.72 -51.93 -0.35 0.30 16 38 H 0.06 0.77 7.45 -51.93 -0.39 0.38 16 39 H 0.37 3.32 5.66 45.56 0.26 3.58 16 40 H 0.12 1.01 8.04 -52.49 -0.42 0.59 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.12 0.89 5.87 -52.49 -0.31 0.58 16 LS Contribution 348.57 15.07 5.25 5.25 Total: -1.00 -31.25 348.57 -9.51 -40.76 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.67 Total: 4.01 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -2.74 Total: -23.39 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.13 Total: -36.86 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.46 Total: -6.67 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.25 -9.51 -40.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877536311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.203 kcal (2) G-P(sol) polarization free energy of solvation -31.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds