Wall clock time and date at job start Mon Mar 30 2020 01:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46545 * 2 1 4 4 C 1.53004 * 109.47189 * 240.00300 * 2 1 3 5 5 C 1.50699 * 109.47164 * 64.99508 * 4 2 1 6 6 H 1.08006 * 119.99656 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00225 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99768 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00221 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46918 * 59.99670 * 9 7 5 11 11 H 1.48497 * 109.46919 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47081 * 299.99636 * 9 7 5 13 13 C 1.52993 * 109.47243 * 119.99979 * 2 1 3 14 14 N 1.46897 * 109.47330 * 295.00274 * 13 2 1 15 15 C 1.46900 * 111.00360 * 180.02562 * 14 13 2 16 16 H 1.08999 * 109.46881 * 34.99251 * 15 14 13 17 17 C 1.53005 * 109.46727 * 274.99817 * 15 14 13 18 18 C 1.52993 * 109.47645 * 155.00095 * 15 14 13 19 19 H 1.09003 * 109.47203 * 304.99531 * 18 15 14 20 20 O 1.42898 * 109.47517 * 64.99608 * 18 15 14 21 21 C 1.50702 * 109.47442 * 185.00023 * 18 15 14 22 22 C 1.38234 * 120.00271 * 99.99361 * 21 18 15 23 23 C 1.38230 * 119.99880 * 179.97438 * 22 21 18 24 24 C 1.38235 * 120.00326 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99814 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99485 * 279.97488 * 21 18 15 27 27 H 1.09007 * 109.46545 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47153 * 299.99464 * 1 2 3 29 29 H 1.08991 * 109.47533 * 59.99998 * 1 2 3 30 30 H 1.08991 * 109.46933 * 184.99640 * 4 2 1 31 31 H 1.08993 * 109.46902 * 304.99880 * 4 2 1 32 32 H 0.96993 * 120.00125 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47035 * 175.00468 * 13 2 1 34 34 H 1.08998 * 109.47605 * 55.00497 * 13 2 1 35 35 H 1.00908 * 111.00107 * 303.95090 * 14 13 2 36 36 H 1.08999 * 109.47274 * 179.97438 * 17 15 14 37 37 H 1.09000 * 109.47247 * 300.00108 * 17 15 14 38 38 H 1.09002 * 109.47046 * 59.99824 * 17 15 14 39 39 H 0.96700 * 114.00054 * 59.99589 * 20 18 15 40 40 H 1.08001 * 119.99769 * 359.97438 * 22 21 18 41 41 H 1.08000 * 120.00376 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.00616 * 179.72578 * 24 23 22 43 43 H 1.08001 * 120.00299 * 179.97438 * 25 24 23 44 44 H 1.07997 * 120.00489 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0805 0.9746 -2.3756 7 6 1.9923 -0.4021 -3.7284 8 7 2.6755 -1.5191 -3.8513 9 14 1.4986 0.5630 -5.2497 10 1 2.0916 1.9230 -5.1871 11 1 1.9935 -0.1371 -6.4622 12 1 0.0187 0.6705 -5.3090 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1258 -0.6265 3.6671 16 1 3.0896 -1.0976 3.4737 17 6 1.1141 -1.6918 4.0943 18 6 2.2787 0.4083 4.7836 19 1 2.9307 1.2138 4.4456 20 8 0.9959 0.9421 5.1173 21 6 2.8809 -0.2489 5.9987 22 6 4.2298 -0.1054 6.2651 23 6 4.7820 -0.7078 7.3800 24 6 3.9853 -1.4533 8.2288 25 6 2.6363 -1.5960 7.9630 26 6 2.0844 -0.9950 6.8471 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.1263 -0.7993 -1.2056 31 1 1.6055 -1.7197 -1.2952 32 1 2.9221 -1.8424 -4.7319 33 1 3.1263 -0.7993 1.2055 34 1 1.6056 -1.7198 1.2951 35 1 1.9882 0.9873 2.3967 36 1 1.4662 -2.1848 5.0004 37 1 0.1503 -1.2209 4.2876 38 1 1.0051 -2.4291 3.2989 39 1 0.3627 0.2800 5.4267 40 1 4.8521 0.4774 5.6022 41 1 5.8357 -0.5953 7.5885 42 1 4.4176 -1.9276 9.0975 43 1 2.0139 -2.1788 8.6258 44 1 1.0306 -1.1072 6.6389 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877536311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:32 Heat of formation + Delta-G solvation = -64.704237 kcal Electronic energy + Delta-G solvation = -21281.694232 eV Core-core repulsion = 18197.103199 eV Total energy + Delta-G solvation = -3084.591033 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.93341 -38.87453 -37.60831 -35.55972 -34.07698 -32.47760 -31.87579 -30.40776 -28.72287 -27.65811 -26.41898 -24.43971 -23.43982 -22.49579 -21.40222 -20.70736 -18.65635 -18.49686 -17.20517 -16.86488 -16.61719 -16.46727 -16.23226 -15.54541 -15.34682 -15.14150 -14.56096 -14.50892 -14.25232 -14.04320 -13.66121 -13.38702 -13.36182 -13.16249 -12.89944 -12.72494 -12.69099 -12.54969 -12.34238 -12.20216 -11.99336 -11.93764 -11.80313 -11.48516 -11.16312 -11.05693 -10.73403 -10.53255 -9.81099 -9.67377 -9.30716 -8.17665 -6.26937 0.38769 0.48910 1.39904 1.42818 1.50486 2.41931 2.78898 3.14231 3.15694 3.56031 3.73775 3.89146 3.92130 4.11764 4.15394 4.18251 4.28607 4.35638 4.39069 4.52072 4.59051 4.64091 4.79285 4.86132 4.89068 4.92729 5.01677 5.03713 5.05852 5.14072 5.28536 5.34338 5.46976 5.51074 5.54680 5.57090 5.61759 5.64594 5.81042 5.88589 6.08065 6.09382 6.31317 6.48000 6.76365 6.88891 7.41320 8.94325 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.037000 B = 0.002898 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.583727 B = 9659.046636 C = 9907.797180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.073 4.073 3 H 0.053 0.947 4 C 0.033 3.967 5 C -0.530 4.530 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.079 3.921 14 N -0.670 5.670 15 C 0.059 3.941 16 H 0.040 0.960 17 C -0.146 4.146 18 C 0.157 3.843 19 H 0.101 0.899 20 O -0.555 6.555 21 C -0.124 4.124 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.127 4.127 25 C -0.126 4.126 26 C -0.118 4.118 27 H 0.034 0.966 28 H 0.067 0.933 29 H 0.036 0.964 30 H -0.015 1.015 31 H -0.011 1.011 32 H 0.262 0.738 33 H 0.015 0.985 34 H 0.060 0.940 35 H 0.342 0.658 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.045 0.955 39 H 0.382 0.618 40 H 0.126 0.874 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.428 0.682 25.841 25.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 H 0.071 0.929 4 C -0.004 4.004 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.050 4.050 14 N -0.302 5.302 15 C -0.051 4.051 16 H 0.058 0.942 17 C -0.204 4.204 18 C 0.097 3.903 19 H 0.119 0.881 20 O -0.363 6.363 21 C -0.125 4.125 22 C -0.145 4.145 23 C -0.146 4.146 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.135 4.135 27 H 0.053 0.947 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.003 0.997 31 H 0.007 0.993 32 H 0.071 0.929 33 H 0.033 0.967 34 H 0.079 0.921 35 H 0.161 0.839 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.232 0.768 40 H 0.144 0.856 41 H 0.156 0.844 42 H 0.160 0.840 43 H 0.161 0.839 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.147 0.841 25.571 25.586 hybrid contribution 0.899 -0.261 -1.194 1.517 sum 1.045 0.581 24.378 24.407 Atomic orbital electron populations 1.21464 0.94635 1.00269 1.00472 1.21006 0.96760 0.98343 0.93117 0.92886 1.19001 0.93990 0.94656 0.92782 1.21619 1.34492 1.08595 0.92094 0.92103 1.25960 0.95241 0.96108 1.02670 1.70093 1.40289 1.22966 1.24348 0.85559 0.78960 0.78774 0.78126 1.19234 1.20981 1.19208 1.21888 0.96199 0.97398 0.89544 1.60477 1.63908 1.05458 1.00368 1.22151 0.97304 0.95498 0.90179 0.94159 1.21916 0.99398 0.97691 1.01353 1.20824 0.85061 0.94514 0.89878 0.88095 1.86600 1.22626 1.39193 1.87865 1.20524 0.94925 0.99498 0.97526 1.21233 0.94588 1.00417 0.98265 1.21424 1.00959 0.97556 0.94669 1.21520 0.94217 0.98655 1.00094 1.21461 0.95837 0.99720 0.97340 1.21179 1.00503 0.97029 0.94833 0.94717 0.91447 0.94463 0.99698 0.99269 0.92926 0.96701 0.92149 0.83935 0.90629 0.90984 0.93596 0.76756 0.85563 0.84386 0.84021 0.83864 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.34 8.89 71.98 0.64 -3.70 16 2 C -0.07 -3.05 2.48 -10.79 -0.03 -3.08 16 3 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 4 C 0.03 1.78 4.45 29.85 0.13 1.92 16 5 C -0.53 -30.43 8.41 25.60 0.22 -30.22 16 6 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 7 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 8 N -0.94 -57.95 13.29 21.45 0.28 -57.66 16 9 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 C 0.08 2.76 4.87 86.30 0.42 3.18 16 14 N -0.67 -18.80 5.71 -491.60 -2.81 -21.61 16 15 C 0.06 1.36 2.48 44.91 0.11 1.47 16 16 H 0.04 1.02 7.80 -2.39 -0.02 1.01 16 17 C -0.15 -3.00 8.16 71.98 0.59 -2.41 16 18 C 0.16 3.19 2.99 29.85 0.09 3.28 16 19 H 0.10 2.09 7.89 -2.39 -0.02 2.07 16 20 O -0.56 -11.80 13.03 -148.98 -1.94 -13.74 16 21 C -0.12 -2.30 4.82 -19.87 -0.10 -2.40 16 22 C -0.13 -2.28 9.67 22.27 0.22 -2.07 16 23 C -0.13 -1.98 10.05 22.27 0.22 -1.75 16 24 C -0.13 -1.76 10.05 22.27 0.22 -1.53 16 25 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 26 C -0.12 -1.85 7.30 22.27 0.16 -1.69 16 27 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.07 2.31 7.75 -2.39 -0.02 2.29 16 29 H 0.04 1.55 6.95 -2.39 -0.02 1.53 16 30 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 31 H -0.01 -0.65 8.14 -2.39 -0.02 -0.66 16 32 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.01 0.54 8.05 -2.39 -0.02 0.52 16 34 H 0.06 2.18 7.44 -2.39 -0.02 2.16 16 35 H 0.34 9.38 8.28 -89.69 -0.74 8.63 16 36 H 0.08 1.30 5.58 -2.39 -0.01 1.29 16 37 H 0.07 1.34 6.72 -2.39 -0.02 1.32 16 38 H 0.04 1.10 7.45 -2.39 -0.02 1.08 16 39 H 0.38 6.05 5.66 -74.06 -0.42 5.63 16 40 H 0.13 2.04 8.04 -2.91 -0.02 2.02 16 41 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 42 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 43 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 44 H 0.14 1.66 5.87 -2.91 -0.02 1.64 16 Total: -1.00 -67.08 348.57 0.97 -66.11 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -0.18 Total: 20.11 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 3.58 Total: -40.23 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -2.52 Total: -79.27 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -1.94 Total: -13.74 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -67.08 0.97 -66.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877536311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.405 kcal (2) G-P(sol) polarization free energy of solvation -67.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds