Wall clock time and date at job start Mon Mar 30 2020 01:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46896 * 109.47294 * 2 1 4 4 C 1.46893 * 111.00609 * 165.24414 * 3 2 1 5 5 C 1.52998 * 109.46948 * 299.93233 * 4 3 2 6 6 C 1.52999 * 109.47264 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47477 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99567 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00048 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00020 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99908 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47364 * 60.00081 * 11 9 7 13 13 H 1.48501 * 109.47195 * 180.02562 * 11 9 7 14 14 H 1.48509 * 109.47091 * 300.00253 * 11 9 7 15 15 C 1.46907 * 110.99570 * 289.19795 * 3 2 1 16 16 H 1.09000 * 109.47145 * 80.44008 * 15 3 2 17 17 C 1.53001 * 109.47121 * 200.44111 * 15 3 2 18 18 O 1.42897 * 109.47117 * 69.80702 * 17 15 3 19 19 C 1.50701 * 109.47103 * 320.43878 * 15 3 2 20 20 C 1.38241 * 120.00090 * 300.13177 * 19 15 3 21 21 C 1.38237 * 119.99694 * 179.78789 * 20 19 15 22 22 C 1.38232 * 119.99816 * 0.43836 * 21 20 19 23 23 C 1.38230 * 120.00382 * 359.81427 * 22 21 20 24 24 C 1.38231 * 119.99908 * 359.97323 * 23 22 21 25 25 H 1.09000 * 109.47438 * 305.44316 * 1 2 3 26 26 H 1.08991 * 109.47207 * 65.44778 * 1 2 3 27 27 H 1.09004 * 109.47105 * 185.44993 * 1 2 3 28 28 H 1.09003 * 109.47587 * 239.99251 * 2 1 3 29 29 H 1.09009 * 109.47289 * 119.99311 * 2 1 3 30 30 H 1.08999 * 109.47874 * 179.97438 * 4 3 2 31 31 H 1.09007 * 109.47197 * 59.92553 * 4 3 2 32 32 H 1.08994 * 109.47113 * 299.99361 * 5 4 3 33 33 H 1.09003 * 109.47441 * 60.00011 * 5 4 3 34 34 H 1.09003 * 109.47292 * 300.00030 * 6 5 4 35 35 H 1.08999 * 109.47516 * 59.99486 * 6 5 4 36 36 H 0.97001 * 119.99952 * 179.97438 * 10 9 7 37 37 H 1.08997 * 109.47211 * 189.80597 * 17 15 3 38 38 H 1.09004 * 109.46929 * 309.80819 * 17 15 3 39 39 H 0.96702 * 114.00352 * 180.02562 * 18 17 15 40 40 H 1.07995 * 119.99657 * 359.97438 * 20 19 15 41 41 H 1.07997 * 119.99545 * 180.27410 * 21 20 19 42 42 H 1.08001 * 119.99486 * 179.83529 * 22 21 20 43 43 H 1.07999 * 120.00053 * 180.02562 * 23 22 21 44 44 H 1.08007 * 120.00064 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4454 1.4393 0.3493 5 6 3.6514 0.8477 1.7451 6 6 5.1365 0.9037 2.1087 7 6 5.3394 0.3215 3.4839 8 1 4.4937 -0.0516 4.0424 9 6 6.6048 0.2642 4.0284 10 7 7.6347 0.7180 3.3480 11 14 6.8564 -0.4582 5.7326 12 1 6.3963 -1.8700 5.7448 13 1 8.2978 -0.4037 6.0856 14 1 6.0748 0.3256 6.7228 15 6 1.7699 2.0315 -1.2953 16 1 0.7338 2.3670 -1.3401 17 6 2.7026 3.2341 -1.4532 18 8 4.0455 2.7762 -1.6235 19 6 2.0277 1.0466 -2.4064 20 6 3.2798 0.4787 -2.5500 21 6 3.5149 -0.4281 -3.5666 22 6 2.5005 -0.7600 -4.4449 23 6 1.2499 -0.1882 -4.3045 24 6 1.0135 0.7152 -3.2853 25 1 -0.3634 0.5959 0.8372 26 1 -0.3633 0.4270 -0.9347 27 1 -0.3633 -1.0231 0.0976 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.7823 2.4759 0.3414 31 1 4.0197 0.8644 -0.3773 32 1 3.0773 1.4224 2.4717 33 1 3.3145 -0.1890 1.7538 34 1 5.7105 0.3287 1.3820 35 1 5.4740 1.9401 2.0999 36 1 8.5248 0.6780 3.7312 37 1 2.4031 3.8140 -2.3261 38 1 2.6423 3.8600 -0.5629 39 1 4.6929 3.4867 -1.7295 40 1 4.0734 0.7412 -1.8662 41 1 4.4919 -0.8751 -3.6761 42 1 2.6850 -1.4665 -5.2408 43 1 0.4572 -0.4479 -4.9906 44 1 0.0365 1.1624 -3.1758 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880460422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:05 Heat of formation + Delta-G solvation = -15.979931 kcal Electronic energy + Delta-G solvation = -22442.454576 eV Core-core repulsion = 19359.976387 eV Total energy + Delta-G solvation = -3082.478189 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.31692 -37.68255 -35.96696 -33.82308 -32.05537 -31.41805 -30.77680 -29.73417 -27.95640 -25.78741 -23.54880 -22.67345 -22.49782 -21.82480 -20.04726 -19.30529 -17.49236 -16.63131 -16.22490 -15.78086 -15.32399 -15.11288 -14.85454 -14.38167 -14.25074 -13.90814 -13.46664 -13.11827 -12.99084 -12.57639 -12.32940 -12.22077 -11.98632 -11.80041 -11.54111 -11.37472 -11.09893 -10.98128 -10.76861 -10.64435 -10.53647 -10.41822 -10.27645 -9.76181 -9.38586 -9.22856 -8.94716 -8.79646 -8.55736 -8.27149 -7.84001 -5.93263 -3.94769 1.42811 1.53331 3.37449 3.41289 3.44336 3.84408 4.21694 4.41359 4.52361 4.80934 4.90187 5.07023 5.10497 5.23788 5.30993 5.42274 5.43791 5.52979 5.58653 5.62406 5.72266 5.76363 5.83231 5.96240 6.05685 6.10661 6.17615 6.27670 6.35346 6.41963 6.53912 6.57672 6.73891 6.77738 6.90043 6.95901 7.14321 7.24465 7.51517 7.56404 7.71055 7.77381 7.94409 8.08674 8.52456 9.12462 9.68677 11.18058 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022392 B = 0.004211 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.127221 B = 6647.510386 C = 6793.025089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.036 3.964 3 N -0.524 5.524 4 C 0.051 3.949 5 C -0.112 4.112 6 C 0.026 3.974 7 C -0.517 4.517 8 H 0.053 0.947 9 C 0.056 3.944 10 N -0.897 5.897 11 Si 0.890 3.110 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.121 3.879 16 H 0.093 0.907 17 C 0.079 3.921 18 O -0.558 6.558 19 C -0.099 4.099 20 C -0.092 4.092 21 C -0.129 4.129 22 C -0.125 4.125 23 C -0.131 4.131 24 C -0.117 4.117 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.013 0.987 35 H 0.014 0.986 36 H 0.260 0.740 37 H 0.046 0.954 38 H 0.060 0.940 39 H 0.373 0.627 40 H 0.151 0.849 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.896 2.521 -15.488 20.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.092 4.092 3 N -0.248 5.248 4 C -0.075 4.075 5 C -0.149 4.149 6 C -0.011 4.011 7 C -0.556 4.556 8 H 0.071 0.929 9 C -0.144 4.144 10 N -0.536 5.536 11 Si 0.718 3.282 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.203 1.203 15 C 0.012 3.988 16 H 0.111 0.889 17 C 0.001 3.999 18 O -0.365 6.365 19 C -0.101 4.101 20 C -0.110 4.110 21 C -0.147 4.147 22 C -0.143 4.143 23 C -0.149 4.149 24 C -0.136 4.136 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.221 0.779 40 H 0.168 0.832 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.260 2.237 -15.038 20.173 hybrid contribution 0.874 -0.364 0.177 0.963 sum -12.386 1.874 -14.861 19.436 Atomic orbital electron populations 1.21732 0.95739 1.00984 1.01578 1.22286 0.95346 0.89658 1.01890 1.62675 1.19595 1.17047 1.25438 1.22718 0.85416 1.02173 0.97177 1.21790 1.00337 0.98819 0.94005 1.19014 0.89254 0.96960 0.95909 1.21250 0.92871 1.39837 1.01626 0.92881 1.25009 0.96210 0.95669 0.97539 1.69958 0.99042 1.47035 1.37602 0.86694 0.76896 0.79717 0.84892 1.20320 1.21351 1.20280 1.20964 0.98693 0.92341 0.86786 0.88879 1.22142 0.82897 0.95232 0.99596 1.86755 1.16961 1.36900 1.95858 1.20420 0.93991 0.98719 0.96979 1.21778 0.97349 0.94417 0.97462 1.21248 0.99103 0.98523 0.95801 1.21103 0.93610 1.00193 0.99438 1.21009 0.96994 0.98205 0.98680 1.21017 0.98493 0.98596 0.95500 0.92110 0.93427 0.92994 0.94046 0.89957 0.89974 0.93682 0.93089 0.93742 0.96912 0.96747 0.93088 0.93625 0.92206 0.77862 0.83195 0.86395 0.86727 0.86694 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.86 37.16 0.37 -1.42 16 2 C 0.04 0.54 5.08 -3.83 -0.02 0.52 16 3 N -0.52 -8.01 4.67 -228.03 -1.07 -9.08 16 4 C 0.05 0.92 3.31 -3.83 -0.01 0.90 16 5 C -0.11 -2.41 4.97 -26.73 -0.13 -2.54 16 6 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 11 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 15 C 0.12 1.55 2.51 -68.86 -0.17 1.37 16 16 H 0.09 1.07 7.51 -51.93 -0.39 0.68 16 17 C 0.08 0.91 6.00 37.16 0.22 1.14 16 18 O -0.56 -6.95 7.50 -35.23 -0.26 -7.22 16 19 C -0.10 -1.30 2.89 -104.62 -0.30 -1.61 16 20 C -0.09 -1.33 6.75 -39.58 -0.27 -1.60 16 21 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 22 C -0.13 -1.47 10.05 -39.59 -0.40 -1.86 16 23 C -0.13 -1.46 10.05 -39.59 -0.40 -1.86 16 24 C -0.12 -1.37 8.97 -39.59 -0.36 -1.73 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.54 6.65 -51.93 -0.35 0.20 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.65 5.39 -51.93 -0.28 0.37 16 29 H 0.08 1.38 5.66 -51.92 -0.29 1.08 16 30 H 0.08 1.46 5.39 -51.93 -0.28 1.18 16 31 H 0.05 0.85 4.58 -51.92 -0.24 0.61 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.04 0.96 6.12 -51.93 -0.32 0.64 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.69 7.66 -51.93 -0.40 0.30 16 39 H 0.37 3.29 9.12 45.56 0.42 3.70 16 40 H 0.15 2.43 3.69 -52.49 -0.19 2.23 16 41 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.11 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.12 1.13 7.93 -52.48 -0.42 0.71 16 LS Contribution 335.13 15.07 5.05 5.05 Total: -1.00 -31.73 335.13 -9.06 -40.79 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.08 Total: 4.01 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -2.42 Total: -24.01 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: -0.33 Total: -35.67 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.26 Total: -7.22 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.73 -9.06 -40.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880460422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.811 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds