Wall clock time and date at job start Mon Mar 30 2020 01:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46896 * 109.47294 * 2 1 4 4 C 1.46893 * 111.00609 * 165.24414 * 3 2 1 5 5 C 1.52998 * 109.46948 * 299.93233 * 4 3 2 6 6 C 1.52999 * 109.47264 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47477 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99567 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00048 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00020 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99908 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47364 * 60.00081 * 11 9 7 13 13 H 1.48501 * 109.47195 * 180.02562 * 11 9 7 14 14 H 1.48509 * 109.47091 * 300.00253 * 11 9 7 15 15 C 1.46907 * 110.99570 * 289.19795 * 3 2 1 16 16 H 1.09000 * 109.47145 * 80.44008 * 15 3 2 17 17 C 1.53001 * 109.47121 * 200.44111 * 15 3 2 18 18 O 1.42897 * 109.47117 * 69.80702 * 17 15 3 19 19 C 1.50701 * 109.47103 * 320.43878 * 15 3 2 20 20 C 1.38241 * 120.00090 * 300.13177 * 19 15 3 21 21 C 1.38237 * 119.99694 * 179.78789 * 20 19 15 22 22 C 1.38232 * 119.99816 * 0.43836 * 21 20 19 23 23 C 1.38230 * 120.00382 * 359.81427 * 22 21 20 24 24 C 1.38231 * 119.99908 * 359.97323 * 23 22 21 25 25 H 1.09000 * 109.47438 * 305.44316 * 1 2 3 26 26 H 1.08991 * 109.47207 * 65.44778 * 1 2 3 27 27 H 1.09004 * 109.47105 * 185.44993 * 1 2 3 28 28 H 1.09003 * 109.47587 * 239.99251 * 2 1 3 29 29 H 1.09009 * 109.47289 * 119.99311 * 2 1 3 30 30 H 1.08999 * 109.47874 * 179.97438 * 4 3 2 31 31 H 1.09007 * 109.47197 * 59.92553 * 4 3 2 32 32 H 1.08994 * 109.47113 * 299.99361 * 5 4 3 33 33 H 1.09003 * 109.47441 * 60.00011 * 5 4 3 34 34 H 1.09003 * 109.47292 * 300.00030 * 6 5 4 35 35 H 1.08999 * 109.47516 * 59.99486 * 6 5 4 36 36 H 0.97001 * 119.99952 * 179.97438 * 10 9 7 37 37 H 1.08997 * 109.47211 * 189.80597 * 17 15 3 38 38 H 1.09004 * 109.46929 * 309.80819 * 17 15 3 39 39 H 0.96702 * 114.00352 * 180.02562 * 18 17 15 40 40 H 1.07995 * 119.99657 * 359.97438 * 20 19 15 41 41 H 1.07997 * 119.99545 * 180.27410 * 21 20 19 42 42 H 1.08001 * 119.99486 * 179.83529 * 22 21 20 43 43 H 1.07999 * 120.00053 * 180.02562 * 23 22 21 44 44 H 1.08007 * 120.00064 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4454 1.4393 0.3493 5 6 3.6514 0.8477 1.7451 6 6 5.1365 0.9037 2.1087 7 6 5.3394 0.3215 3.4839 8 1 4.4937 -0.0516 4.0424 9 6 6.6048 0.2642 4.0284 10 7 7.6347 0.7180 3.3480 11 14 6.8564 -0.4582 5.7326 12 1 6.3963 -1.8700 5.7448 13 1 8.2978 -0.4037 6.0856 14 1 6.0748 0.3256 6.7228 15 6 1.7699 2.0315 -1.2953 16 1 0.7338 2.3670 -1.3401 17 6 2.7026 3.2341 -1.4532 18 8 4.0455 2.7762 -1.6235 19 6 2.0277 1.0466 -2.4064 20 6 3.2798 0.4787 -2.5500 21 6 3.5149 -0.4281 -3.5666 22 6 2.5005 -0.7600 -4.4449 23 6 1.2499 -0.1882 -4.3045 24 6 1.0135 0.7152 -3.2853 25 1 -0.3634 0.5959 0.8372 26 1 -0.3633 0.4270 -0.9347 27 1 -0.3633 -1.0231 0.0976 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.7823 2.4759 0.3414 31 1 4.0197 0.8644 -0.3773 32 1 3.0773 1.4224 2.4717 33 1 3.3145 -0.1890 1.7538 34 1 5.7105 0.3287 1.3820 35 1 5.4740 1.9401 2.0999 36 1 8.5248 0.6780 3.7312 37 1 2.4031 3.8140 -2.3261 38 1 2.6423 3.8600 -0.5629 39 1 4.6929 3.4867 -1.7295 40 1 4.0734 0.7412 -1.8662 41 1 4.4919 -0.8751 -3.6761 42 1 2.6850 -1.4665 -5.2408 43 1 0.4572 -0.4479 -4.9906 44 1 0.0365 1.1624 -3.1758 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880460422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:05 Heat of formation + Delta-G solvation = -36.485797 kcal Electronic energy + Delta-G solvation = -22443.343777 eV Core-core repulsion = 19359.976387 eV Total energy + Delta-G solvation = -3083.367390 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.36259 -38.71439 -37.06086 -35.76250 -33.76847 -32.60733 -31.78631 -30.98040 -29.26164 -27.44149 -25.02574 -23.82460 -23.45002 -23.27024 -21.59588 -20.50044 -18.60349 -18.30745 -17.63803 -16.91791 -16.48056 -16.30132 -16.22197 -16.03656 -15.45708 -15.21159 -14.51596 -14.41259 -14.09209 -14.06191 -13.75101 -13.43266 -13.20911 -13.14076 -12.91314 -12.78333 -12.64693 -12.41514 -12.31030 -12.16658 -11.91402 -11.65898 -11.55342 -11.36748 -11.12670 -11.07945 -10.64303 -10.52229 -9.74291 -9.52411 -9.08411 -8.18716 -6.29858 0.49026 0.58619 1.39105 1.42583 1.50495 2.41344 2.86236 3.13301 3.13766 3.48086 3.87701 3.93448 4.10815 4.16188 4.22283 4.33847 4.41846 4.46859 4.54184 4.60566 4.64091 4.71042 4.74886 4.83011 4.85255 4.91954 4.98429 5.11370 5.15175 5.17232 5.27177 5.33929 5.38639 5.41590 5.53895 5.62753 5.73405 5.77950 5.81966 5.88084 6.18989 6.19792 6.28261 6.32375 6.86414 6.93679 7.38966 8.92837 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022392 B = 0.004211 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.127221 B = 6647.510386 C = 6793.025089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.036 3.964 3 N -0.524 5.524 4 C 0.069 3.931 5 C -0.097 4.097 6 C 0.034 3.966 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.001 3.999 10 N -0.932 5.932 11 Si 0.964 3.036 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.266 1.266 15 C 0.118 3.882 16 H 0.116 0.884 17 C 0.078 3.922 18 O -0.578 6.578 19 C -0.105 4.105 20 C -0.113 4.113 21 C -0.147 4.147 22 C -0.128 4.128 23 C -0.129 4.129 24 C -0.118 4.118 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.034 0.966 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.046 0.954 33 H 0.041 0.959 34 H -0.015 1.015 35 H -0.008 1.008 36 H 0.263 0.737 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.386 0.614 40 H 0.125 0.875 41 H 0.117 0.883 42 H 0.136 0.864 43 H 0.144 0.856 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.083 2.364 -16.046 22.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.091 4.091 3 N -0.248 5.248 4 C -0.057 4.057 5 C -0.135 4.135 6 C -0.004 4.004 7 C -0.583 4.583 8 H 0.074 0.926 9 C -0.197 4.197 10 N -0.572 5.572 11 Si 0.788 3.212 12 H -0.193 1.193 13 H -0.206 1.206 14 H -0.191 1.191 15 C 0.010 3.990 16 H 0.133 0.867 17 C 0.001 3.999 18 O -0.387 6.387 19 C -0.106 4.106 20 C -0.131 4.131 21 C -0.165 4.165 22 C -0.146 4.146 23 C -0.147 4.147 24 C -0.136 4.136 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.003 0.997 35 H 0.010 0.990 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.236 0.764 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.154 0.846 43 H 0.162 0.838 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.461 2.091 -15.606 22.067 hybrid contribution 1.570 -0.312 0.269 1.623 sum -13.891 1.779 -15.338 20.769 Atomic orbital electron populations 1.21662 0.93231 1.01856 1.02365 1.22268 0.97315 0.89244 1.00303 1.62649 1.17177 1.17327 1.27607 1.22389 0.87484 1.01452 0.94421 1.21567 0.96661 0.98955 0.96353 1.18872 0.92109 0.94746 0.94626 1.21668 0.93413 1.40417 1.02766 0.92626 1.25962 0.95765 0.95823 1.02100 1.70093 0.99591 1.47877 1.39652 0.85526 0.77177 0.79161 0.79336 1.19337 1.20590 1.19120 1.21139 1.00133 0.92494 0.85259 0.86674 1.22208 0.82366 0.94820 1.00542 1.86734 1.17863 1.38188 1.95907 1.20408 0.93849 0.98837 0.97548 1.21647 0.97624 0.95896 0.97951 1.21389 0.99945 0.98869 0.96338 1.21389 0.93480 1.00342 0.99387 1.21392 0.97366 0.97259 0.98692 1.21314 0.99000 0.98363 0.94943 0.92206 0.91819 0.91954 0.94833 0.92397 0.89970 0.94784 0.93487 0.94075 0.99697 0.98972 0.92784 0.91249 0.92454 0.76375 0.85765 0.86459 0.84568 0.83774 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.86 71.98 0.71 -2.35 16 2 C 0.04 1.08 5.08 86.30 0.44 1.52 16 3 N -0.52 -15.85 4.67 -875.37 -4.09 -19.94 16 4 C 0.07 2.57 3.31 86.30 0.29 2.85 16 5 C -0.10 -4.37 4.97 30.59 0.15 -4.22 16 6 C 0.03 1.90 4.97 29.85 0.15 2.04 16 7 C -0.54 -32.43 9.11 25.60 0.23 -32.20 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 9 C 0.00 0.07 5.46 84.65 0.46 0.53 16 10 N -0.93 -58.10 13.29 21.45 0.28 -57.81 16 11 Si 0.96 45.48 29.54 68.60 2.03 47.50 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 15 C 0.12 2.84 2.51 44.17 0.11 2.95 16 16 H 0.12 2.29 7.51 -2.39 -0.02 2.27 16 17 C 0.08 1.73 6.00 71.98 0.43 2.16 16 18 O -0.58 -14.74 7.50 -148.98 -1.12 -15.86 16 19 C -0.10 -2.61 2.89 -19.86 -0.06 -2.67 16 20 C -0.11 -3.31 6.75 22.27 0.15 -3.16 16 21 C -0.15 -3.91 10.05 22.27 0.22 -3.68 16 22 C -0.13 -2.76 10.05 22.27 0.22 -2.54 16 23 C -0.13 -2.49 10.05 22.27 0.22 -2.26 16 24 C -0.12 -2.40 8.97 22.27 0.20 -2.20 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.25 6.65 -2.39 -0.02 1.23 16 27 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.03 1.06 5.39 -2.39 -0.01 1.05 16 29 H 0.06 1.98 5.66 -2.38 -0.01 1.97 16 30 H 0.08 3.02 5.39 -2.39 -0.01 3.01 16 31 H 0.03 1.36 4.58 -2.38 -0.01 1.35 16 32 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.04 1.85 6.12 -2.39 -0.01 1.83 16 34 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 35 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 36 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 1.28 7.66 -2.38 -0.02 1.27 16 39 H 0.39 7.06 9.12 -74.06 -0.68 6.39 16 40 H 0.12 4.27 3.69 -2.91 -0.01 4.26 16 41 H 0.12 2.95 8.06 -2.91 -0.02 2.93 16 42 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 43 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 44 H 0.14 2.13 7.93 -2.91 -0.02 2.10 16 Total: -1.00 -69.57 335.13 1.35 -68.22 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.31 Total: 21.12 kcal Atomic # 6 Polarization: -47.16 SS G_CDS: 3.94 Total: -43.22 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -3.81 Total: -77.75 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -1.12 Total: -15.86 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -69.57 1.35 -68.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880460422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.732 kcal (2) G-P(sol) polarization free energy of solvation -69.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds