Wall clock time and date at job start Mon Mar 30 2020 01:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47271 * 2 1 4 4 C 1.50708 * 109.47098 * 240.00264 * 2 1 3 5 5 H 1.07992 * 119.99752 * 244.53462 * 4 2 1 6 6 C 1.37875 * 119.99880 * 64.52774 * 4 2 1 7 7 N 1.31520 * 120.00078 * 7.05200 * 6 4 2 8 8 Si 1.86804 * 119.99991 * 187.05191 * 6 4 2 9 9 H 1.48498 * 109.46890 * 94.98718 * 8 6 4 10 10 H 1.48501 * 109.46979 * 214.98811 * 8 6 4 11 11 H 1.48500 * 109.46911 * 334.98573 * 8 6 4 12 12 C 1.50693 * 109.47652 * 120.00398 * 2 1 3 13 13 O 1.21273 * 120.00565 * 90.53963 * 12 2 1 14 14 N 1.34784 * 119.99795 * 270.53986 * 12 2 1 15 15 C 1.47428 * 125.64898 * 5.94339 * 14 12 2 16 16 C 1.54903 * 104.83240 * 155.89017 * 15 14 12 17 17 H 1.09001 * 111.00345 * 278.93137 * 16 15 14 18 18 C 1.53003 * 111.00109 * 155.08101 * 16 15 14 19 19 C 1.53005 * 117.49755 * 136.42392 * 18 16 15 20 20 C 1.53002 * 60.00134 * 252.51009 * 19 18 16 21 21 C 1.55154 * 101.58293 * 37.00634 * 16 15 14 22 22 C 1.47022 * 125.65137 * 185.96070 * 14 12 2 23 23 H 1.08997 * 110.01100 * 300.53508 * 22 14 12 24 24 C 1.52996 * 109.87825 * 61.62073 * 22 14 12 25 25 C 1.53004 * 117.50399 * 290.32271 * 24 22 14 26 26 C 1.53004 * 60.03147 * 107.50485 * 25 24 22 27 27 H 1.08992 * 109.47367 * 61.11637 * 1 2 3 28 28 H 1.09004 * 109.47320 * 181.12190 * 1 2 3 29 29 H 1.09001 * 109.46917 * 301.11527 * 1 2 3 30 30 H 0.97001 * 120.00000 * 179.97438 * 7 6 4 31 31 H 1.09000 * 110.36466 * 37.04892 * 15 14 12 32 32 H 1.09005 * 110.45402 * 274.77950 * 15 14 12 33 33 H 1.08994 * 115.55482 * 282.13116 * 18 16 15 34 34 H 1.09005 * 117.49739 * 0.02562 * 19 18 16 35 35 H 1.09001 * 117.49802 * 145.01738 * 19 18 16 36 36 H 1.08993 * 117.50048 * 252.50785 * 20 19 18 37 37 H 1.09000 * 117.49454 * 107.48956 * 20 19 18 38 38 H 1.08997 * 110.72072 * 206.12762 * 21 16 15 39 39 H 1.09005 * 110.71745 * 82.86204 * 21 16 15 40 40 H 1.09008 * 115.56342 * 144.63194 * 24 22 14 41 41 H 1.08998 * 117.49693 * 0.02562 * 25 24 22 42 42 H 1.08996 * 117.50031 * 214.99996 * 25 24 22 43 43 H 1.09001 * 117.50046 * 107.48503 * 26 25 24 44 44 H 1.09002 * 117.49655 * 252.48351 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5914 -1.6292 -1.1332 6 6 1.7779 -0.1873 -2.4806 7 7 1.2202 0.9981 -2.5964 8 14 2.2255 -1.1623 -4.0099 9 1 1.0390 -1.9238 -4.4762 10 1 2.6677 -0.2311 -5.0788 11 1 3.3258 -2.1071 -3.6901 12 6 2.0324 -0.7104 1.2303 13 8 2.2440 -1.9041 1.1975 14 7 2.2467 -0.0192 2.3674 15 6 1.9170 1.4013 2.5844 16 6 1.7601 1.5419 4.1191 17 1 0.7741 1.2088 4.4431 18 6 2.0255 2.9803 4.5679 19 6 1.0692 3.5872 5.5966 20 6 1.0201 4.0511 4.1394 21 6 2.8674 0.5851 4.6345 22 6 2.8483 -0.5566 3.5965 23 1 2.2516 -1.3882 3.9711 24 6 4.2765 -1.0271 3.3140 25 6 4.4508 -2.2718 2.4416 26 6 4.7955 -0.8908 1.8804 27 1 -0.3634 0.4964 -0.8997 28 1 -0.3634 -1.0275 0.0201 29 1 -0.3633 0.5311 0.8798 30 1 1.0415 1.3663 -3.4759 31 1 0.9832 1.6549 2.0827 32 1 2.7250 2.0390 2.2256 33 1 3.0750 3.2692 4.6242 34 1 0.2512 2.9616 5.9539 35 1 1.4896 4.2754 6.3300 36 1 1.4081 5.0444 3.9141 37 1 0.1695 3.7307 3.5378 38 1 2.6203 0.2083 5.6269 39 1 3.8363 1.0845 4.6407 40 1 4.9903 -0.8762 4.1240 41 1 3.5480 -2.7554 2.0685 42 1 5.2790 -2.9400 2.6778 43 1 5.8503 -0.6503 1.7477 44 1 4.1195 -0.4662 1.1382 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885218939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:57 Heat of formation + Delta-G solvation = 18.246294 kcal Electronic energy + Delta-G solvation = -22866.970462 eV Core-core repulsion = 19785.976433 eV Total energy + Delta-G solvation = -3080.994028 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.23139 -37.95051 -36.47287 -35.16127 -33.61253 -31.30939 -30.07225 -28.63478 -25.17136 -24.31884 -22.59658 -22.46315 -22.03416 -21.70897 -20.13099 -19.77333 -17.92985 -16.61245 -16.41660 -15.87047 -15.39359 -14.98798 -14.56314 -14.26536 -13.87652 -13.41237 -13.03762 -12.75082 -12.64835 -12.21509 -11.98922 -11.87175 -11.63771 -11.57527 -11.32951 -11.09060 -10.96108 -10.82837 -10.66451 -10.61412 -10.54297 -10.33324 -10.26143 -9.97882 -9.90529 -9.68358 -9.45883 -9.01676 -8.46384 -8.28731 -7.88596 -6.05493 -4.05499 3.33781 3.40124 3.45712 3.63933 3.67138 3.75483 4.32829 4.47066 4.55210 4.69223 4.76288 4.93471 5.08421 5.18772 5.29967 5.30460 5.45300 5.47982 5.57013 5.60020 5.62859 5.76789 5.80806 5.87076 5.92370 6.01962 6.05164 6.07169 6.17979 6.26924 6.29297 6.38472 6.44402 6.62178 6.76995 6.87405 6.91612 6.96663 7.19745 7.47642 7.68828 7.97144 8.15138 8.43843 9.00920 9.30908 9.58680 11.04465 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017477 B = 0.005998 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.765505 B = 4666.881669 C = 5792.216426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.035 3.965 3 H 0.049 0.951 4 C -0.500 4.500 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.540 3.460 13 O -0.538 6.538 14 N -0.627 5.627 15 C 0.116 3.884 16 C -0.072 4.072 17 H 0.082 0.918 18 C -0.139 4.139 19 C -0.181 4.181 20 C -0.178 4.178 21 C -0.114 4.114 22 C 0.165 3.835 23 H 0.069 0.931 24 C -0.175 4.175 25 C -0.187 4.187 26 C -0.171 4.171 27 H 0.079 0.921 28 H 0.035 0.965 29 H 0.014 0.986 30 H 0.261 0.739 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.139 0.861 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.588 4.972 15.428 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.014 3.986 3 H 0.067 0.933 4 C -0.538 4.538 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.333 3.667 13 O -0.415 6.415 14 N -0.363 5.363 15 C -0.008 4.008 16 C -0.091 4.091 17 H 0.100 0.900 18 C -0.157 4.157 19 C -0.218 4.218 20 C -0.215 4.215 21 C -0.152 4.152 22 C 0.061 3.939 23 H 0.087 0.913 24 C -0.194 4.194 25 C -0.223 4.223 26 C -0.208 4.208 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.156 0.844 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.622 4.391 15.162 15.868 hybrid contribution 0.367 -0.280 -0.798 0.922 sum 1.990 4.110 14.364 15.072 Atomic orbital electron populations 1.21636 0.96707 0.99686 1.00251 1.18846 0.93795 0.96974 0.89006 0.93279 1.21046 1.34732 1.08938 0.89095 0.91218 1.24924 0.95253 0.94748 0.99030 1.69945 1.43864 1.15705 1.23736 0.86502 0.78838 0.79927 0.82369 1.20662 1.21345 1.19694 1.21654 0.74790 0.87309 0.82908 1.90318 1.51638 1.15793 1.83711 1.48883 1.63251 1.11234 1.12942 1.22153 1.01208 0.83104 0.94323 1.21948 0.99236 0.92609 0.95292 0.89993 1.22170 0.96584 0.93169 1.03800 1.22979 1.02378 1.03906 0.92524 1.22953 1.02106 0.98998 0.97425 1.22682 0.99167 0.95509 0.97863 1.20975 0.91791 0.95657 0.85439 0.91288 1.22675 0.97089 1.04851 0.94748 1.23678 1.04978 0.90861 1.02793 1.23024 1.00628 1.01313 0.95834 0.90241 0.94606 0.96723 0.92965 0.90437 0.91670 0.87639 0.88921 0.89081 0.88804 0.88476 0.90624 0.90486 0.88386 0.84370 0.90842 0.90278 0.87566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.93 8.97 37.16 0.33 -2.60 16 2 C 0.03 0.87 1.84 -92.92 -0.17 0.70 16 3 H 0.05 1.27 7.41 -51.93 -0.38 0.88 16 4 C -0.50 -14.02 8.29 -34.44 -0.29 -14.30 16 5 H 0.07 2.06 7.09 -52.49 -0.37 1.69 16 6 C 0.06 1.71 5.23 -17.82 -0.09 1.61 16 7 N -0.89 -25.12 11.98 55.43 0.66 -24.45 16 8 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.54 12.23 4.23 -10.99 -0.05 12.18 16 13 O -0.54 -13.40 11.86 5.56 0.07 -13.34 16 14 N -0.63 -11.41 2.54 -163.03 -0.41 -11.82 16 15 C 0.12 1.76 5.59 -2.53 -0.01 1.75 16 16 C -0.07 -0.84 3.16 -88.47 -0.28 -1.12 16 17 H 0.08 0.96 8.02 -51.93 -0.42 0.54 16 18 C -0.14 -1.38 5.15 -90.61 -0.47 -1.85 16 19 C -0.18 -1.58 10.20 -26.73 -0.27 -1.85 16 20 C -0.18 -1.72 10.14 -26.73 -0.27 -1.99 16 21 C -0.11 -1.33 5.90 -24.90 -0.15 -1.48 16 22 C 0.17 2.57 3.28 -66.96 -0.22 2.35 16 23 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 24 C -0.17 -2.77 5.61 -90.58 -0.51 -3.28 16 25 C -0.19 -3.39 9.57 -26.73 -0.26 -3.64 16 26 C -0.17 -3.17 9.42 -26.69 -0.25 -3.42 16 27 H 0.08 2.01 6.70 -51.93 -0.35 1.66 16 28 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.01 0.29 7.14 -51.93 -0.37 -0.09 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.08 1.24 6.75 -51.93 -0.35 0.89 16 32 H 0.07 1.01 8.03 -51.93 -0.42 0.59 16 33 H 0.11 1.01 8.00 -51.93 -0.42 0.60 16 34 H 0.09 0.79 8.11 -51.93 -0.42 0.36 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.85 7.63 -51.93 -0.40 0.45 16 40 H 0.10 1.32 8.04 -51.92 -0.42 0.90 16 41 H 0.14 2.95 4.92 -52.09 -0.26 2.70 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.11 2.35 5.06 -51.93 -0.26 2.09 16 LS Contribution 340.18 15.07 5.13 5.13 Total: -1.00 -29.58 340.18 -9.88 -39.46 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -7.35 Total: 5.20 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -2.95 Total: -16.93 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.25 Total: -36.28 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.07 Total: -13.34 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.58 -9.88 -39.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885218939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.703 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds