Wall clock time and date at job start Mon Mar 30 2020 01:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47271 * 2 1 4 4 C 1.50708 * 109.47098 * 240.00264 * 2 1 3 5 5 H 1.07992 * 119.99752 * 244.53462 * 4 2 1 6 6 C 1.37875 * 119.99880 * 64.52774 * 4 2 1 7 7 N 1.31520 * 120.00078 * 7.05200 * 6 4 2 8 8 Si 1.86804 * 119.99991 * 187.05191 * 6 4 2 9 9 H 1.48498 * 109.46890 * 94.98718 * 8 6 4 10 10 H 1.48501 * 109.46979 * 214.98811 * 8 6 4 11 11 H 1.48500 * 109.46911 * 334.98573 * 8 6 4 12 12 C 1.50693 * 109.47652 * 120.00398 * 2 1 3 13 13 O 1.21273 * 120.00565 * 90.53963 * 12 2 1 14 14 N 1.34784 * 119.99795 * 270.53986 * 12 2 1 15 15 C 1.47428 * 125.64898 * 5.94339 * 14 12 2 16 16 C 1.54903 * 104.83240 * 155.89017 * 15 14 12 17 17 H 1.09001 * 111.00345 * 278.93137 * 16 15 14 18 18 C 1.53003 * 111.00109 * 155.08101 * 16 15 14 19 19 C 1.53005 * 117.49755 * 136.42392 * 18 16 15 20 20 C 1.53002 * 60.00134 * 252.51009 * 19 18 16 21 21 C 1.55154 * 101.58293 * 37.00634 * 16 15 14 22 22 C 1.47022 * 125.65137 * 185.96070 * 14 12 2 23 23 H 1.08997 * 110.01100 * 300.53508 * 22 14 12 24 24 C 1.52996 * 109.87825 * 61.62073 * 22 14 12 25 25 C 1.53004 * 117.50399 * 290.32271 * 24 22 14 26 26 C 1.53004 * 60.03147 * 107.50485 * 25 24 22 27 27 H 1.08992 * 109.47367 * 61.11637 * 1 2 3 28 28 H 1.09004 * 109.47320 * 181.12190 * 1 2 3 29 29 H 1.09001 * 109.46917 * 301.11527 * 1 2 3 30 30 H 0.97001 * 120.00000 * 179.97438 * 7 6 4 31 31 H 1.09000 * 110.36466 * 37.04892 * 15 14 12 32 32 H 1.09005 * 110.45402 * 274.77950 * 15 14 12 33 33 H 1.08994 * 115.55482 * 282.13116 * 18 16 15 34 34 H 1.09005 * 117.49739 * 0.02562 * 19 18 16 35 35 H 1.09001 * 117.49802 * 145.01738 * 19 18 16 36 36 H 1.08993 * 117.50048 * 252.50785 * 20 19 18 37 37 H 1.09000 * 117.49454 * 107.48956 * 20 19 18 38 38 H 1.08997 * 110.72072 * 206.12762 * 21 16 15 39 39 H 1.09005 * 110.71745 * 82.86204 * 21 16 15 40 40 H 1.09008 * 115.56342 * 144.63194 * 24 22 14 41 41 H 1.08998 * 117.49693 * 0.02562 * 25 24 22 42 42 H 1.08996 * 117.50031 * 214.99996 * 25 24 22 43 43 H 1.09001 * 117.50046 * 107.48503 * 26 25 24 44 44 H 1.09002 * 117.49655 * 252.48351 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5914 -1.6292 -1.1332 6 6 1.7779 -0.1873 -2.4806 7 7 1.2202 0.9981 -2.5964 8 14 2.2255 -1.1623 -4.0099 9 1 1.0390 -1.9238 -4.4762 10 1 2.6677 -0.2311 -5.0788 11 1 3.3258 -2.1071 -3.6901 12 6 2.0324 -0.7104 1.2303 13 8 2.2440 -1.9041 1.1975 14 7 2.2467 -0.0192 2.3674 15 6 1.9170 1.4013 2.5844 16 6 1.7601 1.5419 4.1191 17 1 0.7741 1.2088 4.4431 18 6 2.0255 2.9803 4.5679 19 6 1.0692 3.5872 5.5966 20 6 1.0201 4.0511 4.1394 21 6 2.8674 0.5851 4.6345 22 6 2.8483 -0.5566 3.5965 23 1 2.2516 -1.3882 3.9711 24 6 4.2765 -1.0271 3.3140 25 6 4.4508 -2.2718 2.4416 26 6 4.7955 -0.8908 1.8804 27 1 -0.3634 0.4964 -0.8997 28 1 -0.3634 -1.0275 0.0201 29 1 -0.3633 0.5311 0.8798 30 1 1.0415 1.3663 -3.4759 31 1 0.9832 1.6549 2.0827 32 1 2.7250 2.0390 2.2256 33 1 3.0750 3.2692 4.6242 34 1 0.2512 2.9616 5.9539 35 1 1.4896 4.2754 6.3300 36 1 1.4081 5.0444 3.9141 37 1 0.1695 3.7307 3.5378 38 1 2.6203 0.2083 5.6269 39 1 3.8363 1.0845 4.6407 40 1 4.9903 -0.8762 4.1240 41 1 3.5480 -2.7554 2.0685 42 1 5.2790 -2.9400 2.6778 43 1 5.8503 -0.6503 1.7477 44 1 4.1195 -0.4662 1.1382 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885218939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:56 Heat of formation + Delta-G solvation = 3.516631 kcal Electronic energy + Delta-G solvation = -22867.609188 eV Core-core repulsion = 19785.976433 eV Total energy + Delta-G solvation = -3081.632755 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.66407 -39.13981 -37.85445 -36.40924 -35.63329 -32.97810 -31.73321 -29.85583 -27.27929 -25.77049 -24.10098 -23.41146 -23.17352 -22.94482 -21.53221 -20.85601 -19.40117 -18.41941 -18.06001 -17.41983 -16.91753 -16.23987 -15.93553 -15.65719 -15.34144 -14.75682 -14.67775 -14.25325 -13.96901 -13.85799 -13.47838 -13.27071 -13.04743 -12.86685 -12.64414 -12.57151 -12.45366 -12.33815 -12.27237 -12.19996 -12.08003 -11.98334 -11.65093 -11.16880 -11.11784 -11.02861 -10.83794 -10.64192 -10.55548 -10.11529 -9.39760 -8.20478 -6.27056 1.37455 1.38898 1.50219 1.93865 2.18847 2.44299 2.91369 2.97799 3.11865 3.56278 3.64885 3.84106 3.94535 4.11448 4.15316 4.18887 4.26429 4.36548 4.39584 4.44927 4.56800 4.60429 4.65918 4.69519 4.82425 4.84508 4.91364 4.93201 4.96461 5.00976 5.06084 5.11093 5.16453 5.30966 5.33476 5.38183 5.38469 5.50132 5.52269 5.66994 5.72990 5.85018 6.16614 6.70309 6.81712 7.38229 7.59943 8.88705 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017477 B = 0.005998 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.765505 B = 4666.881669 C = 5792.216426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.034 3.966 3 H 0.034 0.966 4 C -0.522 4.522 5 H 0.044 0.956 6 C 0.023 3.977 7 N -0.911 5.911 8 Si 0.951 3.049 9 H -0.274 1.274 10 H -0.275 1.275 11 H -0.278 1.278 12 C 0.540 3.460 13 O -0.569 6.569 14 N -0.623 5.623 15 C 0.108 3.892 16 C -0.058 4.058 17 H 0.085 0.915 18 C -0.143 4.143 19 C -0.163 4.163 20 C -0.190 4.190 21 C -0.100 4.100 22 C 0.154 3.846 23 H 0.062 0.938 24 C -0.145 4.145 25 C -0.199 4.199 26 C -0.189 4.189 27 H 0.059 0.941 28 H 0.025 0.975 29 H 0.043 0.957 30 H 0.265 0.735 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.137 0.863 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.247 5.957 17.878 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.013 3.987 3 H 0.052 0.948 4 C -0.560 4.560 5 H 0.062 0.938 6 C -0.177 4.177 7 N -0.550 5.550 8 Si 0.777 3.223 9 H -0.199 1.199 10 H -0.200 1.200 11 H -0.203 1.203 12 C 0.332 3.668 13 O -0.449 6.449 14 N -0.357 5.357 15 C -0.014 4.014 16 C -0.077 4.077 17 H 0.103 0.897 18 C -0.162 4.162 19 C -0.200 4.200 20 C -0.227 4.227 21 C -0.137 4.137 22 C 0.051 3.949 23 H 0.080 0.920 24 C -0.164 4.164 25 C -0.236 4.236 26 C -0.227 4.227 27 H 0.078 0.922 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.155 0.845 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.275 5.414 17.643 18.595 hybrid contribution 0.156 -0.558 -1.566 1.669 sum 2.430 4.856 16.077 16.970 Atomic orbital electron populations 1.21457 0.95898 0.99092 1.00596 1.18709 0.94467 0.95862 0.89681 0.94834 1.21146 1.35295 1.08506 0.91068 0.93777 1.25565 0.95142 0.95590 1.01361 1.70012 1.44061 1.16397 1.24543 0.85644 0.78503 0.78767 0.79379 1.19928 1.19973 1.20326 1.21065 0.75079 0.86887 0.83730 1.90333 1.53199 1.16910 1.84507 1.48730 1.62085 1.12310 1.12556 1.22351 1.00399 0.81206 0.97462 1.21850 0.99701 0.94190 0.91923 0.89652 1.22118 0.97322 0.91790 1.04941 1.23050 1.01603 1.03340 0.92008 1.22999 1.01850 0.99291 0.98595 1.22689 0.99857 0.93579 0.97608 1.21320 0.91288 0.97270 0.85063 0.91960 1.22868 0.97772 1.01720 0.94050 1.23550 1.04353 0.91390 1.04289 1.22913 1.00795 1.01913 0.97040 0.92215 0.95619 0.93805 0.92564 0.91702 0.92007 0.86725 0.88482 0.87447 0.88184 0.89565 0.87595 0.88988 0.84490 0.87880 0.88626 0.88562 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.44 8.97 71.98 0.65 -4.80 16 2 C 0.03 1.77 1.84 -12.29 -0.02 1.75 16 3 H 0.03 1.82 7.41 -2.39 -0.02 1.80 16 4 C -0.52 -30.64 8.29 25.60 0.21 -30.43 16 5 H 0.04 2.76 7.09 -2.91 -0.02 2.74 16 6 C 0.02 1.30 5.23 84.65 0.44 1.75 16 7 N -0.91 -52.21 11.98 21.45 0.26 -51.95 16 8 Si 0.95 45.59 29.54 68.60 2.03 47.61 16 9 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 12 C 0.54 25.46 4.23 87.65 0.37 25.83 16 13 O -0.57 -29.89 11.86 -3.01 -0.04 -29.92 16 14 N -0.62 -22.78 2.54 -788.09 -2.00 -24.78 16 15 C 0.11 3.26 5.59 86.85 0.49 3.74 16 16 C -0.06 -1.20 3.16 -9.40 -0.03 -1.23 16 17 H 0.09 1.76 8.02 -2.39 -0.02 1.74 16 18 C -0.14 -2.40 5.15 -10.79 -0.06 -2.46 16 19 C -0.16 -2.26 10.20 30.60 0.31 -1.95 16 20 C -0.19 -3.27 10.14 30.60 0.31 -2.96 16 21 C -0.10 -1.93 5.90 31.78 0.19 -1.74 16 22 C 0.15 4.51 3.28 45.34 0.15 4.66 16 23 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 24 C -0.15 -4.32 5.61 -10.77 -0.06 -4.38 16 25 C -0.20 -7.21 9.57 30.60 0.29 -6.92 16 26 C -0.19 -7.04 9.42 30.62 0.29 -6.76 16 27 H 0.06 3.10 6.70 -2.39 -0.02 3.09 16 28 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.04 1.80 7.14 -2.39 -0.02 1.79 16 30 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 31 H 0.06 2.09 6.75 -2.39 -0.02 2.08 16 32 H 0.06 1.90 8.03 -2.38 -0.02 1.88 16 33 H 0.11 1.77 8.00 -2.39 -0.02 1.75 16 34 H 0.10 1.29 8.11 -2.38 -0.02 1.27 16 35 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.09 1.58 7.63 -2.38 -0.02 1.56 16 40 H 0.14 3.06 8.04 -2.38 -0.02 3.04 16 41 H 0.10 4.59 4.92 -4.91 -0.02 4.57 16 42 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 43 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 44 H 0.07 3.02 5.06 -2.39 -0.01 3.00 16 Total: -1.00 -67.34 340.18 4.73 -62.61 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.96 Total: 22.33 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 3.53 Total: -25.90 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -1.75 Total: -76.73 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.04 Total: -29.92 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -67.34 4.73 -62.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885218939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.122 kcal (2) G-P(sol) polarization free energy of solvation -67.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds