Wall clock time and date at job start Mon Mar 30 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34125 * 125.99200 * 2 1 4 4 C 1.30497 * 109.25790 * 180.11089 * 3 2 1 5 5 C 1.50700 * 125.65046 * 179.89347 * 4 3 2 6 6 C 1.53119 * 109.51956 * 264.69637 * 5 4 3 7 7 C 1.53044 * 109.27589 * 182.44007 * 6 5 4 8 8 N 1.46847 * 109.51335 * 59.18419 * 7 6 5 9 9 C 1.46899 * 110.99862 * 174.15436 * 8 7 6 10 10 C 1.53004 * 109.47044 * 170.00059 * 9 8 7 11 11 C 1.50700 * 109.47246 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00060 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99782 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00403 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99727 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47092 * 90.00227 * 15 13 11 17 17 H 1.48499 * 109.47398 * 210.00069 * 15 13 11 18 18 H 1.48499 * 109.47383 * 330.00190 * 15 13 11 19 19 C 1.46847 * 111.20163 * 298.24410 * 8 7 6 20 20 C 1.53041 * 109.51486 * 61.75514 * 19 8 7 21 21 N 1.35040 * 108.69623 * 359.63814 * 4 3 2 22 22 H 0.97010 * 126.39645 * 180.20379 * 21 4 3 23 23 C 1.34670 * 125.98570 * 179.70159 * 2 1 3 24 24 C 1.50695 * 126.59438 * 0.07225 * 23 2 1 25 25 H 1.09003 * 109.47403 * 270.30089 * 1 2 3 26 26 H 1.09007 * 109.46858 * 30.29888 * 1 2 3 27 27 H 1.09002 * 109.47626 * 150.29284 * 1 2 3 28 28 H 1.08993 * 109.57339 * 24.85215 * 5 4 3 29 29 H 1.09000 * 109.50507 * 62.50672 * 6 5 4 30 30 H 1.08999 * 109.54263 * 302.39605 * 6 5 4 31 31 H 1.09002 * 109.46396 * 179.19729 * 7 6 5 32 32 H 1.08994 * 109.46485 * 299.17654 * 7 6 5 33 33 H 1.09002 * 109.47485 * 289.99621 * 9 8 7 34 34 H 1.08997 * 109.47251 * 50.00559 * 9 8 7 35 35 H 1.08999 * 109.47327 * 300.00297 * 10 9 8 36 36 H 1.09007 * 109.46711 * 60.00088 * 10 9 8 37 37 H 0.97004 * 120.00524 * 179.97438 * 14 13 11 38 38 H 1.09005 * 109.46836 * 301.74653 * 19 8 7 39 39 H 1.08995 * 109.45748 * 181.76188 * 19 8 7 40 40 H 1.08996 * 109.50341 * 180.87808 * 20 19 8 41 41 H 1.09004 * 109.53393 * 60.77542 * 20 19 8 42 42 H 1.09004 * 109.47317 * 269.98294 * 24 23 2 43 43 H 1.09001 * 109.47168 * 29.98069 * 24 23 2 44 44 H 1.08997 * 109.47711 * 149.97895 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5449 0.7095 -0.0024 5 6 4.7387 1.6293 -0.0055 6 6 5.2223 1.8349 -1.4436 7 6 6.4707 2.7202 -1.4351 8 7 7.5209 2.0795 -0.6333 9 6 8.7795 2.8327 -0.7159 10 6 9.7690 2.2869 0.3156 11 6 11.0603 3.0591 0.2305 12 1 11.1647 3.8593 -0.4871 13 6 12.1081 2.7445 1.0696 14 7 11.9809 1.7704 1.9439 15 14 13.7086 3.7022 0.9647 16 1 13.6490 4.8679 1.8827 17 1 14.8389 2.8218 1.3553 18 1 13.9102 4.1783 -0.4274 19 6 7.0970 1.9148 0.7629 20 6 5.8674 1.0055 0.8200 21 7 3.5912 -0.6401 0.0041 22 1 4.3913 -1.1887 0.0069 23 6 2.2983 -1.0897 0.0057 24 6 1.8472 -2.5275 0.0116 25 1 -0.3634 0.0054 1.0277 26 1 -0.3633 0.8874 -0.5185 27 1 -0.3634 -0.8926 -0.5093 28 1 4.4600 2.5906 0.4261 29 1 4.4377 2.3181 -2.0259 30 1 5.4639 0.8697 -1.8886 31 1 6.8260 2.8570 -2.4565 32 1 6.2251 3.6903 -1.0032 33 1 9.2013 2.7269 -1.7154 34 1 8.5866 3.8859 -0.5124 35 1 9.3472 2.3925 1.3151 36 1 9.9619 1.2335 0.1121 37 1 12.7183 1.5488 2.5340 38 1 6.8483 2.8888 1.1844 39 1 7.9072 1.4664 1.3379 40 1 5.5435 0.8959 1.8550 41 1 6.1187 0.0266 0.4116 42 1 1.7376 -2.8697 1.0408 43 1 0.8896 -2.6100 -0.5025 44 1 2.5878 -3.1429 -0.4990 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886659483.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:42 Heat of formation + Delta-G solvation = 12.590900 kcal Electronic energy + Delta-G solvation = -21412.080878 eV Core-core repulsion = 18363.134365 eV Total energy + Delta-G solvation = -3048.946514 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.17534 -40.05638 -36.28866 -34.80012 -33.96887 -33.15306 -31.98644 -30.92598 -29.35381 -27.57509 -25.81557 -24.62025 -24.00534 -22.32943 -21.51174 -20.97111 -20.19357 -18.67567 -18.19410 -16.65215 -16.58426 -16.38968 -15.96343 -15.75976 -15.48763 -14.68811 -14.62095 -14.50604 -14.16742 -14.03275 -13.75509 -13.69070 -13.52875 -13.25708 -13.15140 -13.01547 -12.87062 -12.85001 -12.44155 -12.24086 -12.14398 -11.91144 -11.68132 -11.55839 -11.22373 -11.04514 -10.91064 -10.78292 -10.53422 -9.19007 -8.98085 -8.20745 -6.31287 1.06432 1.40210 1.41060 1.52243 2.06939 2.19049 2.39931 3.04469 3.12979 3.25886 3.69542 3.85170 4.05725 4.12039 4.17892 4.24082 4.34238 4.41851 4.47658 4.50619 4.55317 4.59616 4.72730 4.74402 4.77472 4.91170 4.93114 4.97085 5.00740 5.05015 5.07620 5.09104 5.12538 5.19849 5.31435 5.36864 5.45723 5.67013 5.78470 5.89907 6.08065 6.30808 6.33763 6.50228 6.85237 7.16527 7.37646 8.91042 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.041443 B = 0.002976 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.459076 B = 9406.909836 C = 9768.595174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.034 4.034 3 N -0.523 5.523 4 C 0.215 3.785 5 C 0.005 3.995 6 C -0.091 4.091 7 C 0.055 3.945 8 N -0.544 5.544 9 C 0.077 3.923 10 C 0.031 3.969 11 C -0.545 4.545 12 H 0.059 0.941 13 C 0.003 3.997 14 N -0.930 5.930 15 Si 0.964 3.036 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.264 1.264 19 C 0.055 3.945 20 C -0.099 4.099 21 N -0.555 5.555 22 H 0.427 0.573 23 C -0.027 4.027 24 C -0.073 4.073 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.032 0.968 33 H 0.065 0.935 34 H 0.020 0.980 35 H 0.002 0.998 36 H -0.005 1.005 37 H 0.264 0.736 38 H 0.026 0.974 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.236 -7.190 -4.808 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.162 4.162 3 N -0.244 5.244 4 C -0.049 4.049 5 C -0.016 4.016 6 C -0.130 4.130 7 C -0.072 4.072 8 N -0.269 5.269 9 C -0.051 4.051 10 C -0.007 4.007 11 C -0.583 4.583 12 H 0.077 0.923 13 C -0.195 4.195 14 N -0.570 5.570 15 Si 0.788 3.212 16 H -0.199 1.199 17 H -0.207 1.207 18 H -0.188 1.188 19 C -0.073 4.073 20 C -0.137 4.137 21 N -0.160 5.160 22 H 0.267 0.733 23 C -0.143 4.143 24 C -0.131 4.131 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.020 0.980 36 H 0.013 0.987 37 H 0.072 0.928 38 H 0.044 0.956 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.115 0.885 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.408 -6.929 -4.878 23.024 hybrid contribution 1.730 0.324 0.634 1.870 sum -19.678 -6.605 -4.243 21.186 Atomic orbital electron populations 1.20073 0.86112 1.03188 1.02553 1.21099 0.97807 0.88076 1.09257 1.70078 1.00708 1.32076 1.21489 1.22983 0.94389 0.82307 1.05250 1.19609 0.88055 0.96289 0.97638 1.21506 0.96014 1.00749 0.94722 1.22132 0.91248 0.95301 0.98561 1.62042 1.03561 1.50717 1.10598 1.21989 0.89075 0.94056 0.99948 1.19061 0.92923 0.95162 0.93516 1.21635 0.99524 1.17867 1.19319 0.92316 1.25916 1.02591 0.96155 0.94857 1.70085 1.33519 1.30923 1.22494 0.85470 0.78477 0.78371 0.78862 1.19867 1.20711 1.18798 1.22070 0.97208 0.98246 0.89790 1.21574 0.92868 0.99235 1.00072 1.43134 1.08841 1.07643 1.56347 0.73270 1.21591 0.83269 0.98721 1.10689 1.20345 1.02807 0.86239 1.03720 0.91082 0.92132 0.89130 0.89202 0.90339 0.91195 0.89846 0.94941 0.91697 0.96208 0.97961 0.98674 0.92761 0.95576 0.91465 0.90658 0.90771 0.89942 0.88450 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.03 10.22 71.24 0.73 -0.30 16 2 C -0.03 -0.81 7.09 41.39 0.29 -0.52 16 3 N -0.52 -15.20 11.25 -176.29 -1.98 -17.18 16 4 C 0.21 5.53 6.88 138.13 0.95 6.48 16 5 C 0.00 0.11 2.73 -11.46 -0.03 0.08 16 6 C -0.09 -2.22 5.36 30.65 0.16 -2.06 16 7 C 0.06 1.56 5.43 86.33 0.47 2.03 16 8 N -0.54 -19.13 4.81 -896.34 -4.31 -23.44 16 9 C 0.08 3.22 5.21 86.30 0.45 3.67 16 10 C 0.03 1.61 4.22 29.85 0.13 1.73 16 11 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 12 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 13 C 0.00 0.17 5.46 84.65 0.46 0.63 16 14 N -0.93 -56.20 13.29 21.45 0.28 -55.91 16 15 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 19 C 0.05 1.87 4.85 86.33 0.42 2.29 16 20 C -0.10 -2.60 5.16 30.65 0.16 -2.45 16 21 N -0.56 -11.61 5.91 -174.61 -1.03 -12.64 16 22 H 0.43 7.11 8.08 -92.70 -0.75 6.36 16 23 C -0.03 -0.53 7.24 40.95 0.30 -0.23 16 24 C -0.07 -0.80 10.22 71.23 0.73 -0.07 16 25 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.09 1.00 7.17 -2.39 -0.02 0.99 16 28 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 2.20 8.12 -2.39 -0.02 2.18 16 32 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.02 0.83 8.08 -2.39 -0.02 0.81 16 35 H 0.00 0.12 6.21 -2.39 -0.01 0.11 16 36 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 37 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 38 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.07 2.71 5.81 -2.39 -0.01 2.69 16 40 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.07 1.83 7.31 -2.38 -0.02 1.81 16 42 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.10 0.76 7.18 -2.39 -0.02 0.74 16 44 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -68.88 347.00 0.66 -68.22 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.23 Total: 14.24 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 5.45 Total: -19.45 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -7.04 Total: -109.17 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -68.88 0.66 -68.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886659483.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.808 kcal (2) G-P(sol) polarization free energy of solvation -68.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds