Wall clock time and date at job start Mon Mar 30 2020 01:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47270 * 2 1 4 4 C 1.50700 * 109.47510 * 239.99090 * 2 1 3 5 5 H 1.07999 * 120.00354 * 240.00484 * 4 2 1 6 6 C 1.37879 * 119.99450 * 60.00261 * 4 2 1 7 7 N 1.31515 * 120.00101 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99844 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47053 * 90.00111 * 8 6 4 10 10 H 1.48498 * 109.47116 * 210.00363 * 8 6 4 11 11 H 1.48500 * 109.46872 * 330.00003 * 8 6 4 12 12 C 1.50703 * 109.46643 * 119.99305 * 2 1 3 13 13 O 1.21286 * 119.99525 * 120.00313 * 12 2 1 14 14 N 1.34769 * 120.00261 * 300.00011 * 12 2 1 15 15 C 1.50613 * 126.12267 * 359.03233 * 14 12 2 16 16 C 1.54267 * 103.71571 * 219.72259 * 15 14 12 17 17 H 1.09004 * 113.28782 * 213.03498 * 16 15 14 18 18 C 1.55835 * 108.04267 * 87.36480 * 16 15 14 19 19 H 1.09001 * 115.86249 * 88.14272 * 18 16 15 20 20 C 1.55918 * 104.54761 * 319.33863 * 18 16 15 21 21 C 1.54578 * 104.62200 * 288.77057 * 20 18 16 22 22 C 1.55911 * 104.65252 * 359.95532 * 21 20 18 23 23 H 1.09002 * 115.86453 * 200.11754 * 22 21 20 24 24 C 1.56902 * 101.52346 * 214.94613 * 18 16 15 25 25 C 1.55825 * 104.58515 * 71.28553 * 22 21 20 26 26 C 1.53002 * 112.76613 * 166.02114 * 25 22 21 27 27 C 1.48100 * 127.85082 * 179.97438 * 14 12 2 28 28 H 1.08999 * 109.46996 * 60.00749 * 1 2 3 29 29 H 1.09004 * 109.47400 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47762 * 300.00685 * 1 2 3 31 31 H 0.97003 * 119.99922 * 179.97438 * 7 6 4 32 32 H 1.08999 * 110.55841 * 101.40444 * 15 14 12 33 33 H 1.09011 * 111.21862 * 338.35649 * 15 14 12 34 34 H 1.09004 * 110.40806 * 169.99204 * 20 18 16 35 35 H 1.08992 * 110.50810 * 47.60728 * 20 18 16 36 36 H 1.08995 * 110.40303 * 241.15619 * 21 20 18 37 37 H 1.09009 * 110.49684 * 118.79570 * 21 20 18 38 38 H 1.08997 * 112.02249 * 297.15405 * 24 18 16 39 39 H 1.08999 * 112.02605 * 170.63563 * 24 18 16 40 40 H 1.09005 * 109.47228 * 58.97885 * 26 25 22 41 41 H 1.09001 * 109.47370 * 178.98673 * 26 25 22 42 42 H 1.09002 * 109.46341 * 298.98694 * 26 25 22 43 43 H 1.08998 * 110.38151 * 21.24987 * 27 14 12 44 44 H 1.08992 * 110.38024 * 258.88533 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6533 -1.5887 -1.1311 6 6 1.6994 -0.2396 -2.4826 7 7 0.9437 0.8300 -2.6034 8 14 2.3215 -1.1208 -4.0078 9 1 1.3429 -2.1621 -4.4116 10 1 2.4869 -0.1419 -5.1122 11 1 3.6294 -1.7587 -3.7119 12 6 2.0322 -0.7103 1.2306 13 8 2.7295 -1.6964 1.1194 14 7 1.7066 -0.2497 2.4546 15 6 0.8711 0.9676 2.7519 16 6 1.5805 1.6118 3.9608 17 1 0.8955 2.1093 4.6476 18 6 2.6884 2.5643 3.4190 19 1 2.3749 3.5866 3.2076 20 6 3.3239 1.7872 2.2260 21 6 4.1181 0.6380 2.8877 22 6 3.8886 0.8298 4.4178 23 1 4.6159 0.3487 5.0718 24 6 3.8070 2.3943 4.5061 25 6 2.4002 0.4280 4.6447 26 6 2.0620 0.2186 6.1221 27 6 2.0998 -0.8067 3.7693 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 0.7097 1.1615 -3.4845 32 1 -0.1455 0.6783 3.0182 33 1 0.8616 1.6557 1.9065 34 1 3.9939 2.4370 1.6629 35 1 2.5475 1.3867 1.5743 36 1 5.1783 0.7221 2.6490 37 1 3.7321 -0.3287 2.5638 38 1 3.4768 2.7316 5.4886 39 1 4.7417 2.8697 4.2087 40 1 2.2624 1.1368 6.6744 41 1 1.0082 -0.0419 6.2203 42 1 2.6748 -0.5882 6.5242 43 1 2.9908 -1.4262 3.6681 44 1 1.2808 -1.3851 4.1968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887880737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:48 Heat of formation + Delta-G solvation = -13.483763 kcal Electronic energy + Delta-G solvation = -23934.420131 eV Core-core repulsion = 20852.050184 eV Total energy + Delta-G solvation = -3082.369947 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.94182 -39.75726 -35.99427 -35.82528 -33.84840 -32.25701 -31.89252 -28.78553 -27.77919 -27.36211 -26.75776 -24.77082 -23.32517 -22.04627 -20.63098 -20.13944 -18.73887 -18.53147 -17.85964 -17.17773 -16.86323 -16.36758 -15.85974 -15.58740 -15.05762 -14.76791 -14.41320 -13.76554 -13.65650 -13.59229 -13.40423 -13.20100 -13.07809 -12.94920 -12.72311 -12.59797 -12.56139 -12.35325 -12.14491 -12.03510 -11.92720 -11.76102 -11.72199 -11.59753 -11.17060 -11.01567 -10.88668 -10.78843 -10.59856 -10.26764 -9.39205 -8.17918 -6.28045 1.36929 1.37156 1.49345 1.94200 2.16586 2.43843 3.11007 3.30501 3.50275 3.56159 3.90594 4.06396 4.19413 4.23082 4.24196 4.29697 4.39677 4.55015 4.62752 4.70231 4.71604 4.72508 4.74804 4.81458 4.85300 4.91711 4.95983 5.02507 5.03299 5.11512 5.20288 5.25143 5.31596 5.33906 5.38563 5.43119 5.44402 5.48066 5.53777 5.70404 5.77062 5.95150 6.20840 6.66777 6.81805 7.38119 7.52112 8.87893 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029291 B = 0.005702 C = 0.005658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.699270 B = 4909.191392 C = 4947.688978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.033 3.967 3 H 0.041 0.959 4 C -0.532 4.532 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.908 5.908 8 Si 0.953 3.047 9 H -0.273 1.273 10 H -0.272 1.272 11 H -0.281 1.281 12 C 0.542 3.458 13 O -0.597 6.597 14 N -0.625 5.625 15 C 0.098 3.902 16 C -0.085 4.085 17 H 0.131 0.869 18 C -0.092 4.092 19 H 0.112 0.888 20 C -0.150 4.150 21 C -0.146 4.146 22 C -0.088 4.088 23 H 0.103 0.897 24 C -0.107 4.107 25 C -0.061 4.061 26 C -0.119 4.119 27 C 0.108 3.892 28 H 0.071 0.929 29 H 0.017 0.983 30 H 0.057 0.943 31 H 0.266 0.734 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.070 0.930 36 H 0.033 0.967 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.618 6.410 19.240 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.012 3.988 3 H 0.058 0.942 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.779 3.221 9 H -0.198 1.198 10 H -0.197 1.197 11 H -0.207 1.207 12 C 0.334 3.666 13 O -0.478 6.478 14 N -0.360 5.360 15 C -0.023 4.023 16 C -0.104 4.104 17 H 0.149 0.851 18 C -0.110 4.110 19 H 0.130 0.870 20 C -0.187 4.187 21 C -0.183 4.183 22 C -0.106 4.106 23 H 0.122 0.878 24 C -0.144 4.144 25 C -0.062 4.062 26 C -0.177 4.177 27 C -0.013 4.013 28 H 0.090 0.910 29 H 0.036 0.964 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.314 5.942 18.921 19.834 hybrid contribution 0.669 -0.841 -1.756 2.059 sum 0.355 5.101 17.165 17.910 Atomic orbital electron populations 1.21697 0.95295 0.99215 1.02039 1.18776 0.95155 0.95575 0.89249 0.94155 1.21283 1.31662 1.12699 0.91344 0.93835 1.25566 0.95165 0.95744 1.01267 1.69940 1.37117 1.23388 1.24318 0.85629 0.78570 0.78668 0.79229 1.19806 1.19656 1.20679 1.21092 0.77905 0.83274 0.84283 1.90500 1.40939 1.29424 1.86904 1.49828 1.52101 1.29685 1.04346 1.23068 0.94437 0.86207 0.98560 1.23913 0.96388 0.94743 0.95307 0.85120 1.23592 0.95415 0.97936 0.94090 0.87046 1.23155 0.99814 0.96927 0.98818 1.23036 0.98050 0.99860 0.97363 1.23566 0.95868 0.97286 0.93845 0.87848 1.23488 0.97823 0.93965 0.99094 1.23173 0.94620 0.92630 0.95769 1.21539 1.02141 1.02939 0.91045 1.22359 0.99604 0.96743 0.82642 0.90993 0.96404 0.92424 0.92522 0.89581 0.90370 0.94520 0.91189 0.94763 0.92046 0.88474 0.91940 0.90108 0.91312 0.92030 0.92543 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.92 8.70 71.98 0.63 -5.29 16 2 C 0.03 1.75 1.78 -12.29 -0.02 1.73 16 3 H 0.04 2.22 6.31 -2.39 -0.02 2.20 16 4 C -0.53 -32.10 8.37 25.60 0.21 -31.89 16 5 H 0.04 2.84 6.75 -2.91 -0.02 2.82 16 6 C 0.02 1.26 5.30 84.66 0.45 1.71 16 7 N -0.91 -51.92 11.32 21.45 0.24 -51.68 16 8 Si 0.95 46.24 29.54 68.60 2.03 48.27 16 9 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 12 C 0.54 26.41 4.84 87.66 0.42 26.84 16 13 O -0.60 -34.00 14.88 -3.05 -0.05 -34.05 16 14 N -0.62 -22.78 1.77 -801.89 -1.42 -24.20 16 15 C 0.10 2.74 4.02 86.00 0.35 3.08 16 16 C -0.08 -1.72 3.76 -7.06 -0.03 -1.75 16 17 H 0.13 1.75 8.06 -2.39 -0.02 1.73 16 18 C -0.09 -2.09 4.79 -7.44 -0.04 -2.13 16 19 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 20 C -0.15 -5.03 5.57 32.14 0.18 -4.85 16 21 C -0.15 -4.95 5.57 32.14 0.18 -4.77 16 22 C -0.09 -2.04 4.30 -7.44 -0.03 -2.07 16 23 H 0.10 2.14 8.14 -2.39 -0.02 2.13 16 24 C -0.11 -2.04 6.44 33.34 0.21 -1.82 16 25 C -0.06 -1.27 0.93 -48.44 -0.04 -1.32 16 26 C -0.12 -1.60 9.09 71.98 0.65 -0.95 16 27 C 0.11 3.22 5.42 86.51 0.47 3.69 16 28 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 29 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.06 2.22 5.26 -2.39 -0.01 2.21 16 31 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 32 H 0.09 2.04 7.95 -2.39 -0.02 2.03 16 33 H 0.08 2.44 5.36 -2.38 -0.01 2.43 16 34 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.07 2.75 1.36 -2.39 0.00 2.75 16 36 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 2.53 2.57 -2.38 -0.01 2.53 16 38 H 0.10 1.31 7.87 -2.39 -0.02 1.30 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.08 0.80 7.87 -2.38 -0.02 0.78 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.06 1.96 6.51 -2.39 -0.02 1.95 16 44 H 0.07 1.92 8.02 -2.39 -0.02 1.90 16 Total: -1.00 -71.69 311.13 5.40 -66.29 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 1.00 Total: 15.16 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 3.60 Total: -19.79 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -1.18 Total: -75.88 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.05 Total: -34.05 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -71.69 5.40 -66.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887880737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.804 kcal (2) G-P(sol) polarization free energy of solvation -71.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds