Wall clock time and date at job start Mon Mar 30 2020 02:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47351 * 2 1 4 4 C 1.50701 * 109.46706 * 120.00068 * 2 1 3 5 5 C 1.34662 * 126.59404 * 324.97004 * 4 2 1 6 6 N 1.34127 * 108.02548 * 180.02562 * 5 4 2 7 7 C 1.30497 * 109.25115 * 0.02562 * 6 5 4 8 8 C 1.50702 * 125.65038 * 180.02562 * 7 6 5 9 9 N 1.46507 * 109.47044 * 275.02269 * 8 7 6 10 10 C 1.36930 * 120.00134 * 269.99860 * 9 8 7 11 11 H 1.08004 * 119.99981 * 141.44357 * 10 9 8 12 12 C 1.38809 * 120.00161 * 321.45255 * 10 9 8 13 13 N 1.31623 * 120.00084 * 339.34932 * 12 10 9 14 14 Si 1.86802 * 120.00425 * 159.35091 * 12 10 9 15 15 H 1.48505 * 109.47033 * 59.99652 * 14 12 10 16 16 H 1.48498 * 109.47238 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47035 * 300.00139 * 14 12 10 18 18 C 1.46500 * 119.99712 * 89.99705 * 9 8 7 19 19 C 1.55238 * 110.46884 * 240.04833 * 18 9 8 20 20 C 1.54887 * 102.58717 * 203.39691 * 19 18 9 21 21 C 1.54262 * 104.31568 * 37.93371 * 20 19 18 22 22 C 1.53878 * 106.59662 * 336.32487 * 21 20 19 23 23 N 1.35048 * 108.70322 * 0.26321 * 7 6 5 24 24 H 0.96997 * 126.39697 * 179.74040 * 23 7 6 25 25 H 1.09000 * 109.46837 * 300.00479 * 1 2 3 26 26 H 1.09006 * 109.46726 * 59.99638 * 1 2 3 27 27 H 1.08991 * 109.47154 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47097 * 239.99880 * 2 1 3 29 29 H 1.09002 * 109.46808 * 59.99923 * 3 2 1 30 30 H 1.09000 * 109.47465 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46937 * 300.00227 * 3 2 1 32 32 H 1.08005 * 125.99162 * 0.04794 * 5 4 2 33 33 H 1.08998 * 109.47453 * 155.02224 * 8 7 6 34 34 H 1.08999 * 109.47539 * 35.02327 * 8 7 6 35 35 H 0.96998 * 120.00128 * 180.02562 * 13 12 10 36 36 H 1.08995 * 110.43871 * 2.70018 * 18 9 8 37 37 H 1.09005 * 110.89896 * 85.10391 * 19 18 9 38 38 H 1.09000 * 110.76928 * 321.62991 * 19 18 9 39 39 H 1.08999 * 110.48836 * 279.18219 * 20 19 18 40 40 H 1.09007 * 110.48535 * 156.67813 * 20 19 18 41 41 H 1.09003 * 110.03495 * 95.60503 * 21 20 19 42 42 H 1.08994 * 110.03198 * 216.98795 * 21 20 19 43 43 H 1.08996 * 110.03218 * 119.28796 * 22 21 20 44 44 H 1.09002 * 110.02725 * 240.67011 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.4651 -0.6990 2.4518 6 7 2.2189 -1.4519 3.2666 7 6 3.2320 -1.9292 2.5966 8 6 4.3105 -2.8226 3.1530 9 7 5.3506 -2.0015 3.7779 10 6 6.4150 -1.5636 3.0362 11 1 6.8099 -0.5705 3.1923 12 6 6.9864 -2.3958 2.0835 13 7 6.8061 -3.6977 2.1537 14 14 8.0113 -1.6682 0.7016 15 1 9.1672 -0.9341 1.2763 16 1 8.5054 -2.7597 -0.1758 17 1 7.1767 -0.7324 -0.0939 18 6 5.2518 -1.6491 5.1965 19 6 5.1984 -0.1074 5.3703 20 6 5.7035 0.0863 6.8217 21 6 6.8183 -0.9680 6.9814 22 6 6.5311 -2.0714 5.9480 23 7 3.1567 -1.4855 1.3233 24 1 3.7812 -1.6818 0.6075 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 0.5613 -0.1755 2.7270 33 1 4.7477 -3.4104 2.3459 34 1 3.8797 -3.4919 3.8977 35 1 7.2057 -4.2793 1.4882 36 1 4.3745 -2.1158 5.6444 37 1 4.1779 0.2608 5.2641 38 1 5.8635 0.3849 4.6609 39 1 4.8990 -0.0982 7.5335 40 1 6.1063 1.0905 6.9546 41 1 7.7905 -0.5162 6.7847 42 1 6.7971 -1.3840 7.9886 43 1 7.3639 -2.1550 5.2499 44 1 6.3708 -3.0237 6.4536 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894039888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:05 Heat of formation + Delta-G solvation = 48.119571 kcal Electronic energy + Delta-G solvation = -22579.887829 eV Core-core repulsion = 19532.481954 eV Total energy + Delta-G solvation = -3047.405875 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.30924 -37.59176 -35.40282 -34.31268 -31.60105 -31.24106 -28.91430 -27.76806 -27.11385 -26.48439 -25.46617 -22.64953 -22.13542 -20.11998 -19.76154 -19.12825 -18.98681 -16.94686 -16.21564 -15.39669 -14.82178 -14.51714 -14.32821 -14.11977 -13.95367 -13.41353 -13.15819 -12.86219 -12.72756 -12.55620 -12.45209 -12.08463 -11.44028 -11.33191 -11.18756 -11.07433 -10.93335 -10.90025 -10.74374 -10.53192 -10.37971 -10.22429 -10.12490 -10.05181 -9.68287 -9.41048 -9.18253 -9.15444 -8.59008 -7.48098 -6.64377 -5.92837 -3.49545 2.78505 3.24000 3.31965 3.33984 3.85437 3.93250 4.37248 4.97293 5.01352 5.15770 5.25422 5.38044 5.46118 5.50491 5.60810 5.63519 5.66853 5.82011 5.87540 5.90607 5.99464 6.13746 6.17615 6.26855 6.30717 6.31855 6.33712 6.35579 6.47455 6.63336 6.65351 6.71280 6.76917 6.94125 7.04915 7.11824 7.20911 7.28878 7.43996 7.55335 7.75745 8.19734 8.43054 8.97109 9.07558 9.69498 10.30827 11.07791 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013519 B = 0.006945 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.686428 B = 4030.434420 C = 5200.705649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.014 4.014 3 C -0.142 4.142 4 C -0.049 4.049 5 C -0.028 4.028 6 N -0.507 5.507 7 C 0.233 3.767 8 C 0.216 3.784 9 N -0.562 5.562 10 C -0.250 4.250 11 H 0.061 0.939 12 C 0.012 3.988 13 N -0.885 5.885 14 Si 0.891 3.109 15 H -0.279 1.279 16 H -0.289 1.289 17 H -0.285 1.285 18 C 0.177 3.823 19 C -0.131 4.131 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.132 4.132 23 N -0.556 5.556 24 H 0.413 0.587 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.152 0.848 33 H 0.106 0.894 34 H 0.059 0.941 35 H 0.257 0.743 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.083 0.917 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.371 5.440 -1.419 9.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.034 4.034 3 C -0.199 4.199 4 C -0.166 4.166 5 C -0.177 4.177 6 N -0.227 5.227 7 C -0.034 4.034 8 C 0.087 3.913 9 N -0.279 5.279 10 C -0.380 4.380 11 H 0.078 0.922 12 C -0.188 4.188 13 N -0.527 5.527 14 Si 0.720 3.280 15 H -0.205 1.205 16 H -0.215 1.215 17 H -0.211 1.211 18 C 0.070 3.930 19 C -0.170 4.170 20 C -0.161 4.161 21 C -0.158 4.158 22 C -0.171 4.171 23 N -0.157 5.157 24 H 0.250 0.750 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.170 0.830 33 H 0.124 0.876 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.101 0.899 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.459 5.128 -0.642 9.075 hybrid contribution 1.049 0.609 -2.014 2.352 sum -6.410 5.737 -2.656 9.003 Atomic orbital electron populations 1.21758 0.94000 1.01998 1.01710 1.19409 0.95739 0.94939 0.93345 1.21838 1.01274 0.95239 1.01576 1.20964 0.92763 1.04337 0.98497 1.21823 1.01773 1.04396 0.89692 1.70269 1.05701 1.14348 1.32360 1.25523 0.97299 1.00324 0.80234 1.19545 0.83517 0.89567 0.98684 1.43734 1.20194 1.60236 1.03772 1.18901 1.07504 0.96305 1.15275 0.92171 1.25198 0.97712 0.94676 1.01228 1.69972 1.46067 1.01725 1.34936 0.86566 0.80665 0.78289 0.82499 1.20504 1.21513 1.21113 1.21307 0.94857 0.92167 0.84692 1.22883 0.99857 0.99598 0.94699 1.22278 0.97899 0.97894 0.97983 1.22063 0.98164 0.97013 0.98511 1.22500 1.01387 0.96051 0.97145 1.43280 1.20910 1.38795 1.12708 0.74998 0.92177 0.92596 0.92495 0.91383 0.92272 0.92753 0.92690 0.83025 0.87640 0.92299 0.93306 0.92472 0.92930 0.91581 0.92652 0.93147 0.92876 0.93341 0.89875 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.79 37.16 0.33 -1.16 16 2 C -0.01 -0.19 3.38 -91.77 -0.31 -0.50 16 3 C -0.14 -1.75 9.18 37.16 0.34 -1.41 16 4 C -0.05 -0.84 6.16 -81.60 -0.50 -1.34 16 5 C -0.03 -0.51 11.06 -17.81 -0.20 -0.71 16 6 N -0.51 -10.81 11.25 -10.81 -0.12 -10.93 16 7 C 0.23 4.98 7.74 -155.41 -1.20 3.78 16 8 C 0.22 4.92 5.90 -5.19 -0.03 4.89 16 9 N -0.56 -13.18 2.44 -164.92 -0.40 -13.58 16 10 C -0.25 -6.29 7.73 -15.06 -0.12 -6.41 16 11 H 0.06 1.58 6.72 -52.48 -0.35 1.22 16 12 C 0.01 0.31 4.96 -17.43 -0.09 0.22 16 13 N -0.88 -23.31 11.49 55.49 0.64 -22.67 16 14 Si 0.89 20.19 29.60 -169.99 -5.03 15.16 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 C 0.18 3.77 3.40 -66.08 -0.22 3.54 16 19 C -0.13 -2.60 6.47 -24.55 -0.16 -2.76 16 20 C -0.12 -2.05 6.82 -25.08 -0.17 -2.22 16 21 C -0.12 -2.03 6.80 -25.61 -0.17 -2.21 16 22 C -0.13 -2.66 6.41 -25.61 -0.16 -2.82 16 23 N -0.56 -10.59 6.15 -6.54 -0.04 -10.63 16 24 H 0.41 7.49 8.96 -40.82 -0.37 7.12 16 25 H 0.06 0.63 7.32 -51.93 -0.38 0.25 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.15 2.40 7.40 -52.48 -0.39 2.01 16 33 H 0.11 2.57 5.56 -51.93 -0.29 2.29 16 34 H 0.06 1.32 7.92 -51.93 -0.41 0.91 16 35 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 36 H 0.06 1.23 7.84 -51.93 -0.41 0.82 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 1.93 6.92 -51.93 -0.36 1.57 16 44 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 348.32 15.07 5.25 5.25 Total: -1.00 -27.14 348.32 -9.88 -37.03 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -7.51 Total: 9.48 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -2.67 Total: -9.10 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: 0.07 Total: -57.81 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.14 -9.88 -37.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894039888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.147 kcal (2) G-P(sol) polarization free energy of solvation -27.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds