Wall clock time and date at job start Mon Mar 30 2020 02:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47351 * 2 1 4 4 C 1.50701 * 109.46706 * 120.00068 * 2 1 3 5 5 C 1.34662 * 126.59404 * 324.97004 * 4 2 1 6 6 N 1.34127 * 108.02548 * 180.02562 * 5 4 2 7 7 C 1.30497 * 109.25115 * 0.02562 * 6 5 4 8 8 C 1.50702 * 125.65038 * 180.02562 * 7 6 5 9 9 N 1.46507 * 109.47044 * 275.02269 * 8 7 6 10 10 C 1.36930 * 120.00134 * 269.99860 * 9 8 7 11 11 H 1.08004 * 119.99981 * 141.44357 * 10 9 8 12 12 C 1.38809 * 120.00161 * 321.45255 * 10 9 8 13 13 N 1.31623 * 120.00084 * 339.34932 * 12 10 9 14 14 Si 1.86802 * 120.00425 * 159.35091 * 12 10 9 15 15 H 1.48505 * 109.47033 * 59.99652 * 14 12 10 16 16 H 1.48498 * 109.47238 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47035 * 300.00139 * 14 12 10 18 18 C 1.46500 * 119.99712 * 89.99705 * 9 8 7 19 19 C 1.55238 * 110.46884 * 240.04833 * 18 9 8 20 20 C 1.54887 * 102.58717 * 203.39691 * 19 18 9 21 21 C 1.54262 * 104.31568 * 37.93371 * 20 19 18 22 22 C 1.53878 * 106.59662 * 336.32487 * 21 20 19 23 23 N 1.35048 * 108.70322 * 0.26321 * 7 6 5 24 24 H 0.96997 * 126.39697 * 179.74040 * 23 7 6 25 25 H 1.09000 * 109.46837 * 300.00479 * 1 2 3 26 26 H 1.09006 * 109.46726 * 59.99638 * 1 2 3 27 27 H 1.08991 * 109.47154 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47097 * 239.99880 * 2 1 3 29 29 H 1.09002 * 109.46808 * 59.99923 * 3 2 1 30 30 H 1.09000 * 109.47465 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46937 * 300.00227 * 3 2 1 32 32 H 1.08005 * 125.99162 * 0.04794 * 5 4 2 33 33 H 1.08998 * 109.47453 * 155.02224 * 8 7 6 34 34 H 1.08999 * 109.47539 * 35.02327 * 8 7 6 35 35 H 0.96998 * 120.00128 * 180.02562 * 13 12 10 36 36 H 1.08995 * 110.43871 * 2.70018 * 18 9 8 37 37 H 1.09005 * 110.89896 * 85.10391 * 19 18 9 38 38 H 1.09000 * 110.76928 * 321.62991 * 19 18 9 39 39 H 1.08999 * 110.48836 * 279.18219 * 20 19 18 40 40 H 1.09007 * 110.48535 * 156.67813 * 20 19 18 41 41 H 1.09003 * 110.03495 * 95.60503 * 21 20 19 42 42 H 1.08994 * 110.03198 * 216.98795 * 21 20 19 43 43 H 1.08996 * 110.03218 * 119.28796 * 22 21 20 44 44 H 1.09002 * 110.02725 * 240.67011 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.4651 -0.6990 2.4518 6 7 2.2189 -1.4519 3.2666 7 6 3.2320 -1.9292 2.5966 8 6 4.3105 -2.8226 3.1530 9 7 5.3506 -2.0015 3.7779 10 6 6.4150 -1.5636 3.0362 11 1 6.8099 -0.5705 3.1923 12 6 6.9864 -2.3958 2.0835 13 7 6.8061 -3.6977 2.1537 14 14 8.0113 -1.6682 0.7016 15 1 9.1672 -0.9341 1.2763 16 1 8.5054 -2.7597 -0.1758 17 1 7.1767 -0.7324 -0.0939 18 6 5.2518 -1.6491 5.1965 19 6 5.1984 -0.1074 5.3703 20 6 5.7035 0.0863 6.8217 21 6 6.8183 -0.9680 6.9814 22 6 6.5311 -2.0714 5.9480 23 7 3.1567 -1.4855 1.3233 24 1 3.7812 -1.6818 0.6075 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 0.5613 -0.1755 2.7270 33 1 4.7477 -3.4104 2.3459 34 1 3.8797 -3.4919 3.8977 35 1 7.2057 -4.2793 1.4882 36 1 4.3745 -2.1158 5.6444 37 1 4.1779 0.2608 5.2641 38 1 5.8635 0.3849 4.6609 39 1 4.8990 -0.0982 7.5335 40 1 6.1063 1.0905 6.9546 41 1 7.7905 -0.5162 6.7847 42 1 6.7971 -1.3840 7.9886 43 1 7.3639 -2.1550 5.2499 44 1 6.3708 -3.0237 6.4536 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894039888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:04 Heat of formation + Delta-G solvation = 35.185574 kcal Electronic energy + Delta-G solvation = -22580.448689 eV Core-core repulsion = 19532.481954 eV Total energy + Delta-G solvation = -3047.966735 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.82425 -39.23940 -36.61826 -35.94102 -33.14302 -33.12375 -30.48254 -29.33627 -28.20154 -27.98484 -27.15229 -24.33833 -23.44256 -21.66985 -21.31781 -20.76314 -20.42144 -18.51548 -17.93470 -17.07475 -16.56456 -16.04836 -15.81827 -15.51029 -15.13723 -14.96666 -14.60738 -14.44531 -14.24586 -14.04359 -13.74365 -13.21572 -13.00872 -12.93298 -12.80701 -12.52393 -12.35097 -12.25572 -12.06699 -11.92813 -11.91349 -11.87698 -11.78359 -11.76211 -11.22528 -11.09446 -10.75169 -10.69224 -10.52668 -8.95652 -8.54043 -7.86275 -5.46876 1.30052 1.41578 1.45603 1.50897 2.31617 2.42253 2.49993 3.20545 3.69719 3.79472 3.97158 4.00849 4.01810 4.12235 4.27035 4.30552 4.52008 4.58131 4.64932 4.69560 4.76278 4.82125 4.86371 4.92192 4.95066 4.97640 5.00867 5.02266 5.17551 5.20612 5.24527 5.31160 5.32763 5.38781 5.44284 5.53693 5.63586 5.64662 5.67097 5.78716 6.06463 6.47122 6.66110 7.14308 7.41479 7.81388 8.39689 9.11456 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013519 B = 0.006945 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.686428 B = 4030.434420 C = 5200.705649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.015 4.015 3 C -0.138 4.138 4 C -0.030 4.030 5 C -0.049 4.049 6 N -0.525 5.525 7 C 0.208 3.792 8 C 0.225 3.775 9 N -0.572 5.572 10 C -0.249 4.249 11 H 0.047 0.953 12 C -0.023 4.023 13 N -0.909 5.909 14 Si 0.944 3.056 15 H -0.282 1.282 16 H -0.291 1.291 17 H -0.279 1.279 18 C 0.169 3.831 19 C -0.122 4.122 20 C -0.112 4.112 21 C -0.112 4.112 22 C -0.127 4.127 23 N -0.557 5.557 24 H 0.416 0.584 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.033 0.967 31 H 0.083 0.917 32 H 0.177 0.823 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.254 0.746 36 H 0.052 0.948 37 H 0.042 0.958 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.357 7.153 -1.731 11.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.035 4.035 3 C -0.195 4.195 4 C -0.147 4.147 5 C -0.197 4.197 6 N -0.246 5.246 7 C -0.059 4.059 8 C 0.096 3.904 9 N -0.290 5.290 10 C -0.380 4.380 11 H 0.065 0.935 12 C -0.221 4.221 13 N -0.553 5.553 14 Si 0.772 3.228 15 H -0.208 1.208 16 H -0.216 1.216 17 H -0.205 1.205 18 C 0.063 3.937 19 C -0.162 4.162 20 C -0.150 4.150 21 C -0.150 4.150 22 C -0.166 4.166 23 N -0.159 5.159 24 H 0.253 0.747 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.194 0.806 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.457 6.853 -0.945 10.926 hybrid contribution 1.275 0.090 -1.929 2.314 sum -7.182 6.944 -2.874 10.395 Atomic orbital electron populations 1.21739 0.91823 1.02215 1.03195 1.19629 0.97436 0.94931 0.91532 1.21807 0.99969 0.94788 1.02949 1.21672 0.91010 1.02275 0.99726 1.22272 1.02670 1.04821 0.89912 1.70183 1.06054 1.14911 1.33453 1.24969 0.97740 1.01788 0.81370 1.19234 0.83747 0.89637 0.97800 1.43848 1.20231 1.60299 1.04645 1.18874 1.07797 0.95647 1.15641 0.93518 1.25684 0.98801 0.94833 1.02787 1.70076 1.47184 1.02550 1.35466 0.85729 0.79294 0.77494 0.80247 1.20798 1.21641 1.20494 1.21452 0.95177 0.93268 0.83831 1.22724 0.98864 0.97946 0.96655 1.22243 0.98195 0.98874 0.95710 1.22016 0.98417 0.95887 0.98676 1.22395 0.99339 0.97626 0.97274 1.43309 1.21582 1.38872 1.12091 0.74723 0.91835 0.90026 0.92936 0.90527 0.92498 0.94738 0.89768 0.80617 0.89515 0.93142 0.93621 0.92950 0.93880 0.93782 0.90921 0.91188 0.92543 0.90695 0.93347 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.79 71.98 0.63 -1.80 16 2 C -0.02 -0.37 3.38 -11.54 -0.04 -0.41 16 3 C -0.14 -3.05 9.18 71.98 0.66 -2.39 16 4 C -0.03 -1.00 6.16 40.95 0.25 -0.75 16 5 C -0.05 -1.76 11.06 83.52 0.92 -0.83 16 6 N -0.53 -22.55 11.25 -188.13 -2.12 -24.66 16 7 C 0.21 9.07 7.74 138.13 1.07 10.14 16 8 C 0.22 10.65 5.90 85.63 0.51 11.16 16 9 N -0.57 -27.74 2.44 -675.70 -1.65 -29.39 16 10 C -0.25 -12.92 7.73 84.03 0.65 -12.27 16 11 H 0.05 2.53 6.72 -2.91 -0.02 2.51 16 12 C -0.02 -1.19 4.96 84.86 0.42 -0.77 16 13 N -0.91 -49.26 11.49 21.65 0.25 -49.01 16 14 Si 0.94 42.06 29.60 68.60 2.03 44.09 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 18 C 0.17 7.35 3.40 46.19 0.16 7.51 16 19 C -0.12 -4.85 6.47 32.01 0.21 -4.65 16 20 C -0.11 -3.51 6.82 31.67 0.22 -3.30 16 21 C -0.11 -3.61 6.80 31.32 0.21 -3.40 16 22 C -0.13 -5.17 6.41 31.32 0.20 -4.97 16 23 N -0.56 -21.32 6.15 -174.60 -1.07 -22.39 16 24 H 0.42 15.20 8.96 -92.71 -0.83 14.37 16 25 H 0.06 1.14 7.32 -2.39 -0.02 1.12 16 26 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.18 5.24 7.40 -2.91 -0.02 5.22 16 33 H 0.09 4.43 5.56 -2.39 -0.01 4.42 16 34 H 0.05 2.39 7.92 -2.39 -0.02 2.37 16 35 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16 36 H 0.05 2.30 7.84 -2.39 -0.02 2.28 16 37 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.04 1.92 6.62 -2.39 -0.02 1.91 16 39 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 42 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.05 2.30 6.92 -2.39 -0.02 2.28 16 44 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -59.48 348.32 3.65 -55.83 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.14 Total: 32.24 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 6.07 Total: -6.71 kcal Atomic # 7 Polarization: -120.86 SS G_CDS: -4.59 Total: -125.45 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -59.48 3.65 -55.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894039888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.016 kcal (2) G-P(sol) polarization free energy of solvation -59.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds