Wall clock time and date at job start Mon Mar 30 2020 02:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38876 * 120.74883 * 2 1 4 4 C 1.38030 * 119.32877 * 180.25914 * 3 2 1 5 5 N 1.31970 * 120.85494 * 359.78970 * 4 3 2 6 6 C 1.32395 * 121.62402 * 359.97438 * 5 4 3 7 7 N 1.39002 * 119.70546 * 179.97438 * 6 5 4 8 8 C 1.38305 * 120.74575 * 179.80358 * 2 1 3 9 9 C 1.50703 * 120.45011 * 359.97438 * 8 2 1 10 10 N 1.46899 * 109.47107 * 269.72074 * 9 8 2 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.46950 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47312 * 300.00123 * 12 11 10 14 14 C 1.52997 * 109.47169 * 60.00159 * 12 11 10 15 15 C 1.53003 * 109.47071 * 180.02562 * 12 11 10 16 16 C 1.50704 * 109.47153 * 179.97438 * 15 12 11 17 17 H 1.07997 * 119.99780 * 359.97438 * 16 15 12 18 18 C 1.37871 * 119.99793 * 180.02562 * 16 15 12 19 19 N 1.31521 * 120.00052 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00014 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46885 * 90.00107 * 20 18 16 22 22 H 1.48496 * 109.47360 * 209.99767 * 20 18 16 23 23 H 1.48495 * 109.47046 * 330.00178 * 20 18 16 24 24 H 1.08997 * 109.47254 * 270.19640 * 1 2 3 25 25 H 1.08996 * 109.47020 * 30.19859 * 1 2 3 26 26 H 1.09000 * 109.47244 * 150.19834 * 1 2 3 27 27 H 1.08002 * 120.33670 * 0.02723 * 3 2 1 28 28 H 1.07998 * 119.57345 * 179.77612 * 4 3 2 29 29 H 0.96994 * 119.99927 * 180.02562 * 7 6 5 30 30 H 0.96999 * 120.00009 * 0.02562 * 7 6 5 31 31 H 1.09002 * 109.47152 * 149.72161 * 9 8 2 32 32 H 1.09001 * 109.46980 * 29.72261 * 9 8 2 33 33 H 1.00902 * 111.00582 * 303.95889 * 10 9 8 34 34 H 1.08995 * 109.47167 * 300.00240 * 11 10 9 35 35 H 1.09003 * 109.46442 * 60.00214 * 11 10 9 36 36 H 1.09002 * 109.47029 * 60.00405 * 13 12 11 37 37 H 1.09000 * 109.47152 * 180.02562 * 13 12 11 38 38 H 1.08993 * 109.47356 * 300.00089 * 13 12 11 39 39 H 1.09005 * 109.46874 * 60.00300 * 14 12 11 40 40 H 1.09000 * 109.47103 * 179.97438 * 14 12 11 41 41 H 1.09002 * 109.47446 * 299.99763 * 14 12 11 42 42 H 1.08995 * 109.47051 * 300.00167 * 15 12 11 43 43 H 1.09003 * 109.46901 * 60.00330 * 15 12 11 44 44 H 0.97005 * 119.99618 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1935 0.0000 4 6 3.5969 1.1593 -0.0054 5 7 4.2454 0.0100 -0.0065 6 6 3.6048 -1.1486 -0.0018 7 7 4.3280 -2.3357 -0.0037 8 6 2.2140 -1.1886 0.0041 9 6 1.4879 -2.5092 0.0092 10 7 1.2584 -2.9365 1.3958 11 6 0.5505 -4.2229 1.4400 12 6 0.3297 -4.6337 2.8971 13 6 1.6823 -4.7715 3.5988 14 6 -0.5065 -3.5668 3.6066 15 6 -0.4070 -5.9739 2.9432 16 6 -0.6240 -6.3788 4.3785 17 1 -0.2713 -5.7440 5.1778 18 6 -1.2718 -7.5601 4.6711 19 7 -1.7000 -8.3339 3.6975 20 14 -1.5402 -8.0624 6.4501 21 1 -2.8384 -7.5214 6.9267 22 1 -1.5551 -9.5440 6.5493 23 1 -0.4405 -7.5212 7.2885 24 1 -0.3633 0.0035 1.0276 25 1 -0.3633 0.8882 -0.5169 26 1 -0.3634 -0.8918 -0.5107 27 1 1.6948 2.1389 0.0004 28 1 4.1530 2.0851 -0.0091 29 1 3.8630 -3.1869 -0.0007 30 1 5.2977 -2.3128 -0.0079 31 1 2.0903 -3.2571 -0.5065 32 1 0.5306 -2.3994 -0.5004 33 1 2.1264 -2.9832 1.9082 34 1 -0.4132 -4.1246 0.9405 35 1 1.1462 -4.9828 0.9341 36 1 2.2075 -3.8169 3.5661 37 1 1.5250 -5.0646 4.6368 38 1 2.2781 -5.5315 3.0934 39 1 -1.4702 -3.4687 3.1068 40 1 -0.6642 -3.8597 4.6446 41 1 0.0187 -2.6122 3.5739 42 1 -1.3706 -5.8761 2.4432 43 1 0.1891 -6.7337 2.4379 44 1 -2.1561 -9.1649 3.9035 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894781443.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:06 Heat of formation + Delta-G solvation = 15.925172 kcal Electronic energy + Delta-G solvation = -21733.840565 eV Core-core repulsion = 18685.038636 eV Total energy + Delta-G solvation = -3048.801929 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.49343 -37.68055 -35.27449 -35.01336 -33.02848 -31.96281 -29.54709 -28.04554 -27.03178 -26.34747 -26.07829 -24.37102 -22.32684 -21.81943 -21.36743 -17.94450 -17.85299 -16.99877 -16.27195 -15.72469 -15.19598 -15.06814 -14.75971 -14.53447 -14.32929 -13.85284 -13.52710 -13.09398 -12.97026 -12.69552 -12.57941 -12.43306 -12.03645 -11.99981 -11.70967 -11.32179 -10.97486 -10.88974 -10.82762 -10.76973 -10.50718 -10.27893 -10.14196 -9.70067 -9.47887 -9.36643 -9.01279 -8.84124 -8.32469 -8.13576 -7.86738 -5.97154 -3.97220 1.21184 1.44095 3.32866 3.39498 3.42142 3.42378 3.82166 4.45690 4.51042 4.62548 4.74615 4.92011 4.98007 5.13930 5.38756 5.42609 5.48350 5.55598 5.62886 5.68730 5.75212 5.81066 5.95165 5.97251 6.06926 6.21166 6.31327 6.45529 6.49171 6.61153 6.65630 6.77219 6.82190 7.13127 7.19454 7.20773 7.25343 7.35085 7.37354 7.62656 7.69500 7.84195 8.03144 8.17984 8.47607 9.08174 9.65734 11.14474 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032157 B = 0.003456 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.531969 B = 8100.784211 C = 8338.719228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.019 3.981 3 C -0.238 4.238 4 C 0.144 3.856 5 N -0.553 5.553 6 C 0.411 3.589 7 N -0.853 5.853 8 C -0.198 4.198 9 C 0.106 3.894 10 N -0.679 5.679 11 C 0.069 3.931 12 C -0.057 4.057 13 C -0.129 4.129 14 C -0.116 4.116 15 C 0.034 3.966 16 C -0.507 4.507 17 H 0.059 0.941 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.887 3.113 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.275 1.275 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.128 0.872 28 H 0.152 0.848 29 H 0.406 0.594 30 H 0.402 0.598 31 H 0.027 0.973 32 H 0.083 0.917 33 H 0.338 0.662 34 H 0.067 0.933 35 H 0.023 0.977 36 H 0.032 0.968 37 H 0.064 0.936 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.054 0.946 41 H 0.042 0.958 42 H 0.015 0.985 43 H 0.012 0.988 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.351 16.129 -9.243 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.011 3.989 3 C -0.261 4.261 4 C -0.012 4.012 5 N -0.271 5.271 6 C 0.174 3.826 7 N -0.398 5.398 8 C -0.205 4.205 9 C -0.023 4.023 10 N -0.311 5.311 11 C -0.060 4.060 12 C -0.058 4.058 13 C -0.186 4.186 14 C -0.173 4.173 15 C -0.003 4.003 16 C -0.545 4.545 17 H 0.077 0.923 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.716 3.284 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.199 1.199 24 H 0.102 0.898 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.146 0.854 28 H 0.169 0.831 29 H 0.238 0.762 30 H 0.231 0.769 31 H 0.045 0.955 32 H 0.101 0.899 33 H 0.157 0.843 34 H 0.086 0.914 35 H 0.041 0.959 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.033 0.967 43 H 0.030 0.970 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.566 16.335 -9.212 20.617 hybrid contribution -0.150 -1.362 0.682 1.531 sum 8.416 14.973 -8.530 19.178 Atomic orbital electron populations 1.20849 0.90283 1.02620 1.03478 1.19920 0.96484 0.91641 0.90862 1.21685 0.95281 0.98356 1.10742 1.22285 0.91684 0.94657 0.92613 1.67156 1.40665 0.97396 1.21912 1.18171 0.87732 0.86720 0.90027 1.42319 1.09489 1.04615 1.83347 1.19922 0.91962 0.96296 1.12362 1.20662 0.99051 0.91291 0.91330 1.60601 1.27455 1.31821 1.11197 1.22150 0.97702 0.87493 0.98631 1.20621 0.95716 0.98148 0.91302 1.21771 0.96361 0.98449 1.02063 1.21593 0.98400 0.96867 1.00437 1.19121 0.94730 0.89385 0.97090 1.21237 1.36102 1.04781 0.92388 0.92311 1.25012 0.96020 0.96753 0.96801 1.69969 1.39704 1.12889 1.31213 0.86665 0.78549 0.77574 0.85646 1.20766 1.21401 1.19949 0.89766 0.91672 0.90822 0.85382 0.83121 0.76235 0.76899 0.95523 0.89860 0.84295 0.91447 0.95916 0.94903 0.91694 0.94152 0.94161 0.92747 0.93894 0.96683 0.96959 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.67 36.00 0.35 -0.78 16 2 C 0.02 0.22 5.91 -104.36 -0.62 -0.40 16 3 C -0.24 -2.46 9.81 -39.42 -0.39 -2.85 16 4 C 0.14 1.56 11.17 -17.57 -0.20 1.37 16 5 N -0.55 -7.06 10.39 -12.44 -0.13 -7.18 16 6 C 0.41 5.09 7.73 -155.02 -1.20 3.89 16 7 N -0.85 -8.52 8.98 31.13 0.28 -8.24 16 8 C -0.20 -2.42 5.43 -104.26 -0.57 -2.98 16 9 C 0.11 1.28 5.01 -4.98 -0.02 1.25 16 10 N -0.68 -9.43 5.70 -115.05 -0.66 -10.08 16 11 C 0.07 1.13 4.65 -3.82 -0.02 1.11 16 12 C -0.06 -1.12 0.60 -154.51 -0.09 -1.21 16 13 C -0.13 -2.37 7.89 37.16 0.29 -2.08 16 14 C -0.12 -2.21 8.06 37.16 0.30 -1.91 16 15 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 16 C -0.51 -13.75 7.65 -34.44 -0.26 -14.01 16 17 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 18 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 20 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.52 8.10 -51.93 -0.42 0.09 16 26 H 0.07 0.72 6.07 -51.93 -0.32 0.41 16 27 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 28 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 29 H 0.41 3.72 6.81 -40.82 -0.28 3.45 16 30 H 0.40 3.49 8.95 -40.82 -0.37 3.12 16 31 H 0.03 0.30 6.57 -51.93 -0.34 -0.04 16 32 H 0.08 0.99 6.06 -51.93 -0.31 0.67 16 33 H 0.34 4.76 6.77 -39.29 -0.27 4.49 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 37 H 0.06 1.31 6.61 -51.93 -0.34 0.97 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 1.12 6.62 -51.93 -0.34 0.77 16 41 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 346.15 15.07 5.22 5.22 Total: -1.00 -30.35 346.15 -9.17 -39.52 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -6.96 Total: 6.64 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -2.63 Total: -16.43 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.23 Total: -51.45 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.35 -9.17 -39.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894781443.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.443 kcal (2) G-P(sol) polarization free energy of solvation -30.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds