Wall clock time and date at job start Mon Mar 30 2020 02:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38876 * 120.74883 * 2 1 4 4 C 1.38030 * 119.32877 * 180.25914 * 3 2 1 5 5 N 1.31970 * 120.85494 * 359.78970 * 4 3 2 6 6 C 1.32395 * 121.62402 * 359.97438 * 5 4 3 7 7 N 1.39002 * 119.70546 * 179.97438 * 6 5 4 8 8 C 1.38305 * 120.74575 * 179.80358 * 2 1 3 9 9 C 1.50703 * 120.45011 * 359.97438 * 8 2 1 10 10 N 1.46899 * 109.47107 * 269.72074 * 9 8 2 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.46950 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47312 * 300.00123 * 12 11 10 14 14 C 1.52997 * 109.47169 * 60.00159 * 12 11 10 15 15 C 1.53003 * 109.47071 * 180.02562 * 12 11 10 16 16 C 1.50704 * 109.47153 * 179.97438 * 15 12 11 17 17 H 1.07997 * 119.99780 * 359.97438 * 16 15 12 18 18 C 1.37871 * 119.99793 * 180.02562 * 16 15 12 19 19 N 1.31521 * 120.00052 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00014 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46885 * 90.00107 * 20 18 16 22 22 H 1.48496 * 109.47360 * 209.99767 * 20 18 16 23 23 H 1.48495 * 109.47046 * 330.00178 * 20 18 16 24 24 H 1.08997 * 109.47254 * 270.19640 * 1 2 3 25 25 H 1.08996 * 109.47020 * 30.19859 * 1 2 3 26 26 H 1.09000 * 109.47244 * 150.19834 * 1 2 3 27 27 H 1.08002 * 120.33670 * 0.02723 * 3 2 1 28 28 H 1.07998 * 119.57345 * 179.77612 * 4 3 2 29 29 H 0.96994 * 119.99927 * 180.02562 * 7 6 5 30 30 H 0.96999 * 120.00009 * 0.02562 * 7 6 5 31 31 H 1.09002 * 109.47152 * 149.72161 * 9 8 2 32 32 H 1.09001 * 109.46980 * 29.72261 * 9 8 2 33 33 H 1.00902 * 111.00582 * 303.95889 * 10 9 8 34 34 H 1.08995 * 109.47167 * 300.00240 * 11 10 9 35 35 H 1.09003 * 109.46442 * 60.00214 * 11 10 9 36 36 H 1.09002 * 109.47029 * 60.00405 * 13 12 11 37 37 H 1.09000 * 109.47152 * 180.02562 * 13 12 11 38 38 H 1.08993 * 109.47356 * 300.00089 * 13 12 11 39 39 H 1.09005 * 109.46874 * 60.00300 * 14 12 11 40 40 H 1.09000 * 109.47103 * 179.97438 * 14 12 11 41 41 H 1.09002 * 109.47446 * 299.99763 * 14 12 11 42 42 H 1.08995 * 109.47051 * 300.00167 * 15 12 11 43 43 H 1.09003 * 109.46901 * 60.00330 * 15 12 11 44 44 H 0.97005 * 119.99618 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1935 0.0000 4 6 3.5969 1.1593 -0.0054 5 7 4.2454 0.0100 -0.0065 6 6 3.6048 -1.1486 -0.0018 7 7 4.3280 -2.3357 -0.0037 8 6 2.2140 -1.1886 0.0041 9 6 1.4879 -2.5092 0.0092 10 7 1.2584 -2.9365 1.3958 11 6 0.5505 -4.2229 1.4400 12 6 0.3297 -4.6337 2.8971 13 6 1.6823 -4.7715 3.5988 14 6 -0.5065 -3.5668 3.6066 15 6 -0.4070 -5.9739 2.9432 16 6 -0.6240 -6.3788 4.3785 17 1 -0.2713 -5.7440 5.1778 18 6 -1.2718 -7.5601 4.6711 19 7 -1.7000 -8.3339 3.6975 20 14 -1.5402 -8.0624 6.4501 21 1 -2.8384 -7.5214 6.9267 22 1 -1.5551 -9.5440 6.5493 23 1 -0.4405 -7.5212 7.2885 24 1 -0.3633 0.0035 1.0276 25 1 -0.3633 0.8882 -0.5169 26 1 -0.3634 -0.8918 -0.5107 27 1 1.6948 2.1389 0.0004 28 1 4.1530 2.0851 -0.0091 29 1 3.8630 -3.1869 -0.0007 30 1 5.2977 -2.3128 -0.0079 31 1 2.0903 -3.2571 -0.5065 32 1 0.5306 -2.3994 -0.5004 33 1 2.1264 -2.9832 1.9082 34 1 -0.4132 -4.1246 0.9405 35 1 1.1462 -4.9828 0.9341 36 1 2.2075 -3.8169 3.5661 37 1 1.5250 -5.0646 4.6368 38 1 2.2781 -5.5315 3.0934 39 1 -1.4702 -3.4687 3.1068 40 1 -0.6642 -3.8597 4.6446 41 1 0.0187 -2.6122 3.5739 42 1 -1.3706 -5.8761 2.4432 43 1 0.1891 -6.7337 2.4379 44 1 -2.1561 -9.1649 3.9035 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894781443.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:05 Heat of formation + Delta-G solvation = -3.109203 kcal Electronic energy + Delta-G solvation = -21734.665957 eV Core-core repulsion = 18685.038636 eV Total energy + Delta-G solvation = -3049.627321 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.33656 -39.13965 -36.41507 -35.87620 -34.62189 -33.45207 -30.48648 -29.09807 -28.70039 -27.89302 -27.26741 -25.82569 -23.97785 -22.68867 -22.26944 -19.54686 -18.67958 -18.32027 -17.80076 -16.90740 -16.58747 -16.03892 -15.94841 -15.74536 -15.42890 -15.02217 -14.86004 -14.56351 -14.14278 -13.88989 -13.85967 -13.57370 -13.37318 -13.27889 -12.99539 -12.77559 -12.66891 -12.37141 -12.26139 -12.17099 -12.11946 -11.87920 -11.61192 -11.36923 -10.87129 -10.77353 -10.49582 -10.29755 -10.19250 -9.27322 -8.69645 -8.13512 -6.20073 0.36689 0.61092 1.41188 1.41372 1.51838 2.44050 2.64633 2.94877 3.20583 3.46992 3.71634 3.96346 4.03469 4.11299 4.19182 4.24783 4.33071 4.40775 4.63460 4.70371 4.78375 4.80624 4.83899 4.86457 4.97657 4.98671 5.07975 5.13963 5.21466 5.22532 5.31664 5.52697 5.55164 5.59441 5.64625 5.66111 5.83905 5.88281 5.93998 6.08439 6.35049 6.38458 6.47854 6.60127 6.95147 7.36956 7.47217 8.98632 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032157 B = 0.003456 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.531969 B = 8100.784211 C = 8338.719228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.009 3.991 3 C -0.239 4.239 4 C 0.137 3.863 5 N -0.575 5.575 6 C 0.398 3.602 7 N -0.847 5.847 8 C -0.214 4.214 9 C 0.111 3.889 10 N -0.673 5.673 11 C 0.082 3.918 12 C -0.054 4.054 13 C -0.122 4.122 14 C -0.106 4.106 15 C 0.041 3.959 16 C -0.514 4.514 17 H 0.064 0.936 18 C -0.003 4.003 19 N -0.937 5.937 20 Si 0.954 3.046 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.264 1.264 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.153 0.847 28 H 0.178 0.822 29 H 0.410 0.590 30 H 0.407 0.593 31 H 0.035 0.965 32 H 0.085 0.915 33 H 0.339 0.661 34 H 0.061 0.939 35 H 0.022 0.978 36 H 0.061 0.939 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.033 0.967 40 H 0.036 0.964 41 H 0.064 0.936 42 H -0.014 1.014 43 H -0.015 1.015 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.059 17.946 -8.857 21.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.001 3.999 3 C -0.261 4.261 4 C -0.019 4.019 5 N -0.294 5.294 6 C 0.160 3.840 7 N -0.392 5.392 8 C -0.221 4.221 9 C -0.018 4.018 10 N -0.305 5.305 11 C -0.047 4.047 12 C -0.054 4.054 13 C -0.179 4.179 14 C -0.163 4.163 15 C 0.003 3.997 16 C -0.552 4.552 17 H 0.082 0.918 18 C -0.200 4.200 19 N -0.578 5.578 20 Si 0.779 3.221 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.188 1.188 24 H 0.096 0.904 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.170 0.830 28 H 0.195 0.805 29 H 0.241 0.759 30 H 0.237 0.763 31 H 0.053 0.947 32 H 0.103 0.897 33 H 0.158 0.842 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.083 0.917 42 H 0.004 0.996 43 H 0.004 0.996 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.290 18.164 -8.825 22.228 hybrid contribution -0.348 -1.861 0.506 1.959 sum 8.941 16.303 -8.319 20.370 Atomic orbital electron populations 1.20847 0.89364 1.03465 1.03245 1.20225 0.97321 0.91878 0.90493 1.21973 0.95273 0.99040 1.09847 1.22824 0.92355 0.95112 0.91642 1.67211 1.41360 0.98022 1.22843 1.18389 0.88086 0.87248 0.90288 1.42298 1.09780 1.04248 1.82888 1.19940 0.92044 0.96411 1.13733 1.20626 0.99434 0.91697 0.90045 1.60528 1.27416 1.29833 1.12728 1.21851 0.97919 0.88814 0.96157 1.20478 0.95781 0.95368 0.93793 1.21674 0.95799 0.99961 1.00457 1.21490 0.98294 0.97560 0.98995 1.18996 0.93475 0.91753 0.95432 1.21622 1.35287 1.04700 0.93589 0.91801 1.25884 0.96009 0.97014 1.01075 1.70105 1.40856 1.13423 1.33460 0.85612 0.78788 0.77097 0.80569 1.20154 1.21259 1.18809 0.90400 0.89710 0.91181 0.82950 0.80492 0.75878 0.76276 0.94717 0.89660 0.84171 0.92037 0.96004 0.92027 0.93665 0.94207 0.94812 0.94535 0.91715 0.99584 0.99629 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 9.67 71.24 0.69 -1.29 16 2 C 0.01 0.19 5.91 -19.70 -0.12 0.07 16 3 C -0.24 -4.34 9.81 22.37 0.22 -4.12 16 4 C 0.14 2.65 11.17 84.62 0.95 3.60 16 5 N -0.58 -13.74 10.39 -193.26 -2.01 -15.75 16 6 C 0.40 9.27 7.73 133.06 1.03 10.30 16 7 N -0.85 -15.85 8.98 -55.44 -0.50 -16.34 16 8 C -0.21 -4.88 5.43 -19.63 -0.11 -4.98 16 9 C 0.11 2.51 5.01 85.56 0.43 2.94 16 10 N -0.67 -17.62 5.70 -517.92 -2.95 -20.57 16 11 C 0.08 2.63 4.65 86.30 0.40 3.03 16 12 C -0.05 -2.08 0.60 -52.18 -0.03 -2.11 16 13 C -0.12 -4.34 7.89 71.98 0.57 -3.77 16 14 C -0.11 -3.97 8.06 71.98 0.58 -3.39 16 15 C 0.04 2.09 4.04 29.85 0.12 2.21 16 16 C -0.51 -28.23 7.65 25.60 0.20 -28.03 16 17 H 0.06 3.39 5.68 -2.91 -0.02 3.37 16 18 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 19 N -0.94 -56.89 13.29 21.45 0.28 -56.60 16 20 Si 0.95 44.33 29.54 68.60 2.03 46.35 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 23 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 24 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.08 1.12 8.10 -2.39 -0.02 1.10 16 26 H 0.07 1.27 6.07 -2.39 -0.01 1.26 16 27 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 28 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 29 H 0.41 6.97 6.81 -92.71 -0.63 6.34 16 30 H 0.41 6.61 8.95 -92.71 -0.83 5.78 16 31 H 0.03 0.74 6.57 -2.39 -0.02 0.72 16 32 H 0.09 1.91 6.06 -2.39 -0.01 1.89 16 33 H 0.34 8.83 6.77 -89.69 -0.61 8.22 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 1.84 6.57 -2.39 -0.02 1.82 16 37 H 0.04 1.78 6.61 -2.39 -0.02 1.76 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.04 1.47 6.62 -2.39 -0.02 1.46 16 41 H 0.06 2.13 7.60 -2.39 -0.02 2.11 16 42 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 43 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 44 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 Total: -1.00 -65.32 346.15 1.19 -64.13 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -1.05 Total: 24.05 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 5.39 Total: -25.26 kcal Atomic # 7 Polarization: -104.10 SS G_CDS: -5.17 Total: -109.27 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -65.32 1.19 -64.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894781443.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.024 kcal (2) G-P(sol) polarization free energy of solvation -65.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds