Wall clock time and date at job start Mon Mar 30 2020 02:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47142 * 2 1 4 4 C 1.50703 * 109.46620 * 119.99430 * 2 1 3 5 5 C 1.34671 * 126.59320 * 325.02468 * 4 2 1 6 6 N 1.34130 * 108.01764 * 179.97438 * 5 4 2 7 7 C 1.30499 * 109.25655 * 359.97438 * 6 5 4 8 8 C 1.50706 * 125.64512 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.47020 * 275.02395 * 8 7 6 10 10 C 1.46840 * 111.00332 * 294.21448 * 9 8 7 11 11 C 1.53039 * 109.52488 * 174.16442 * 10 9 8 12 12 C 1.53113 * 109.28056 * 59.17695 * 11 10 9 13 13 C 1.53122 * 109.15859 * 302.34499 * 12 11 10 14 14 H 1.08993 * 109.53990 * 297.69251 * 13 12 11 15 15 C 1.50701 * 109.50322 * 177.59441 * 13 12 11 16 16 H 1.08001 * 120.00345 * 240.20507 * 15 13 12 17 17 C 1.37883 * 119.99978 * 60.19750 * 15 13 12 18 18 N 1.31518 * 119.99942 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00282 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47220 * 59.99752 * 19 17 15 21 21 H 1.48498 * 109.47152 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46978 * 300.00133 * 19 17 15 23 23 C 1.46854 * 110.99639 * 170.00102 * 9 8 7 24 24 N 1.35043 * 108.70106 * 0.26369 * 7 6 5 25 25 H 0.96998 * 126.39525 * 179.73009 * 24 7 6 26 26 H 1.08996 * 109.47476 * 300.00751 * 1 2 3 27 27 H 1.09005 * 109.46956 * 60.00737 * 1 2 3 28 28 H 1.08998 * 109.47080 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47476 * 239.99249 * 2 1 3 30 30 H 1.09004 * 109.47369 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.47117 * 299.99439 * 3 2 1 32 32 H 1.08996 * 109.47549 * 59.99293 * 3 2 1 33 33 H 1.07994 * 125.99155 * 359.96511 * 5 4 2 34 34 H 1.09000 * 109.47262 * 35.02759 * 8 7 6 35 35 H 1.09002 * 109.46811 * 155.02839 * 8 7 6 36 36 H 1.09003 * 109.46282 * 294.17487 * 10 9 8 37 37 H 1.08999 * 109.46502 * 54.14272 * 10 9 8 38 38 H 1.09004 * 109.50063 * 299.23463 * 11 10 9 39 39 H 1.09005 * 109.50370 * 179.12123 * 11 10 9 40 40 H 1.08999 * 109.52111 * 182.44160 * 12 11 10 41 41 H 1.08997 * 109.52633 * 62.24966 * 12 11 10 42 42 H 0.96999 * 120.00166 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.46461 * 305.85688 * 23 9 8 44 44 H 1.08998 * 109.46215 * 65.82980 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 6 1.4644 -0.6995 2.4517 6 7 2.2179 -1.4531 3.2663 7 6 3.2307 -1.9308 2.5962 8 6 4.3087 -2.8249 3.1526 9 7 5.3520 -2.0023 3.7793 10 6 6.0502 -1.1855 2.7785 11 6 7.0259 -0.2388 3.4813 12 6 8.0336 -1.0604 4.2899 13 6 7.2779 -1.9379 5.2917 14 1 6.7301 -1.3051 5.9899 15 6 8.2587 -2.7935 6.0512 16 1 8.1886 -3.8700 6.0006 17 6 9.2458 -2.2019 6.8108 18 7 9.3310 -0.8910 6.8727 19 14 10.4621 -3.2624 7.7517 20 1 11.2093 -4.1225 6.7992 21 1 11.4158 -2.3908 8.4838 22 1 9.7285 -4.1170 8.7195 23 6 6.2950 -2.8355 4.5364 24 7 3.1556 -1.4870 1.3230 25 1 3.7800 -1.6835 0.6072 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 0.5609 -0.1758 2.7269 34 1 3.8774 -3.4940 3.8972 35 1 4.7456 -3.4128 2.3454 36 1 6.6012 -1.8360 2.0991 37 1 5.3226 -0.6032 2.2132 38 1 6.4740 0.4213 4.1506 39 1 7.5552 0.3563 2.7372 40 1 8.7037 -0.3890 4.8267 41 1 8.6124 -1.6923 3.6163 42 1 10.0257 -0.4748 7.4067 43 1 5.7451 -3.4514 5.2480 44 1 6.8448 -3.4781 3.8488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895230090.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:54 Heat of formation + Delta-G solvation = 38.962305 kcal Electronic energy + Delta-G solvation = -21843.085904 eV Core-core repulsion = 18795.282941 eV Total energy + Delta-G solvation = -3047.802964 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.07350 -38.18655 -35.77257 -33.85163 -32.34934 -31.90391 -29.95667 -28.92956 -27.42283 -25.70316 -24.93966 -22.78637 -22.11389 -21.53595 -20.74626 -19.48628 -18.62535 -17.42964 -16.41497 -15.52937 -14.97912 -14.84867 -14.53787 -14.28443 -14.09626 -13.88456 -13.48825 -13.23503 -13.06675 -12.81295 -12.43436 -12.30768 -12.03430 -11.94899 -11.67257 -11.44650 -11.31006 -11.28629 -10.92091 -10.70321 -10.68108 -10.14977 -9.87304 -9.83099 -9.73926 -9.47542 -9.09702 -8.70981 -8.29065 -8.16046 -7.70406 -5.95465 -4.01834 2.07085 3.08529 3.26805 3.33710 3.38554 3.40890 4.40658 4.46549 4.60924 4.62329 4.67582 4.88150 5.18755 5.22525 5.34459 5.36112 5.43237 5.52607 5.56606 5.59571 5.64078 5.74102 5.78459 5.85147 5.95454 5.99014 6.02973 6.20415 6.34850 6.36410 6.48610 6.67791 6.72886 6.85215 6.95103 7.20730 7.35494 7.42872 7.61427 7.73320 7.78515 8.09913 8.18601 8.28577 8.48670 9.02000 9.62279 11.10618 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.040560 B = 0.003470 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.169101 B = 8068.382136 C = 8392.731343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.016 4.016 3 C -0.144 4.144 4 C -0.028 4.028 5 C -0.021 4.021 6 N -0.472 5.472 7 C 0.230 3.770 8 C 0.137 3.863 9 N -0.528 5.528 10 C 0.062 3.938 11 C -0.116 4.116 12 C -0.110 4.110 13 C 0.056 3.944 14 H 0.036 0.964 15 C -0.515 4.515 16 H 0.053 0.947 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.891 3.109 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.069 3.931 24 N -0.566 5.566 25 H 0.413 0.587 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.164 0.836 34 H 0.103 0.897 35 H 0.040 0.960 36 H 0.022 0.978 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.045 0.955 40 H 0.091 0.909 41 H 0.029 0.971 42 H 0.260 0.740 43 H 0.064 0.936 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.570 1.492 -15.758 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.036 4.036 3 C -0.202 4.202 4 C -0.143 4.143 5 C -0.169 4.169 6 N -0.191 5.191 7 C -0.034 4.034 8 C 0.007 3.993 9 N -0.253 5.253 10 C -0.066 4.066 11 C -0.154 4.154 12 C -0.148 4.148 13 C 0.037 3.963 14 H 0.054 0.946 15 C -0.554 4.554 16 H 0.072 0.928 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.719 3.281 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.057 4.057 24 N -0.169 5.169 25 H 0.250 0.750 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.181 0.819 34 H 0.121 0.879 35 H 0.058 0.942 36 H 0.040 0.960 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.048 0.952 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -13.877 1.813 -14.453 20.118 hybrid contribution 1.582 -0.953 -1.305 2.261 sum -12.295 0.860 -15.758 20.005 Atomic orbital electron populations 1.21790 0.93480 1.02267 1.02267 1.19498 0.96223 0.95134 0.92756 1.21858 1.01181 0.94879 1.02238 1.21139 0.91760 1.02529 0.98917 1.22033 1.01896 1.03776 0.89236 1.70274 1.04550 1.12445 1.31792 1.23137 0.98210 1.01434 0.80600 1.20392 0.89262 0.91802 0.97816 1.61937 1.13875 1.24515 1.25004 1.22065 0.95596 0.95800 0.93103 1.21656 0.97201 0.97722 0.98783 1.21657 0.97452 0.98948 0.96746 1.18659 0.91693 0.93259 0.92704 0.94553 1.21100 1.13374 0.92768 1.28182 0.92832 1.24936 0.97570 0.94893 0.96430 1.69885 1.33798 1.08526 1.40472 0.86681 0.81039 0.80289 0.80091 1.20435 1.21342 1.20256 1.22355 0.92844 0.95094 0.95430 1.43246 1.21931 1.39525 1.12182 0.74997 0.91877 0.92140 0.92353 0.91025 0.92750 0.92188 0.91923 0.81877 0.87895 0.94163 0.96033 0.93025 0.92007 0.93653 0.89051 0.95174 0.92994 0.91751 0.96118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.79 37.16 0.33 -0.66 16 2 C -0.02 -0.14 3.38 -91.77 -0.31 -0.45 16 3 C -0.14 -1.16 9.17 37.16 0.34 -0.82 16 4 C -0.03 -0.33 6.16 -81.60 -0.50 -0.83 16 5 C -0.02 -0.29 11.06 -17.81 -0.20 -0.49 16 6 N -0.47 -8.07 11.25 -10.81 -0.12 -8.19 16 7 C 0.23 3.53 6.65 -155.41 -1.03 2.49 16 8 C 0.14 2.13 5.59 -4.98 -0.03 2.10 16 9 N -0.53 -9.92 4.65 -236.11 -1.10 -11.02 16 10 C 0.06 1.10 5.31 -3.84 -0.02 1.08 16 11 C -0.12 -2.31 6.09 -26.65 -0.16 -2.47 16 12 C -0.11 -2.61 5.03 -26.61 -0.13 -2.74 16 13 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 14 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 15 C -0.52 -14.10 8.56 -34.44 -0.29 -14.40 16 16 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 18 N -0.89 -25.48 11.36 55.43 0.63 -24.85 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.07 1.46 4.68 -3.83 -0.02 1.44 16 24 N -0.57 -6.88 5.53 -6.54 -0.04 -6.92 16 25 H 0.41 3.94 8.96 -40.82 -0.37 3.58 16 26 H 0.06 0.44 7.32 -51.93 -0.38 0.06 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.16 1.92 7.40 -52.49 -0.39 1.53 16 34 H 0.10 1.59 7.99 -51.93 -0.41 1.17 16 35 H 0.04 0.54 8.12 -51.93 -0.42 0.12 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.05 0.84 6.62 -51.93 -0.34 0.50 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.06 1.34 8.02 -51.93 -0.42 0.92 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -30.63 346.03 -10.43 -41.06 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.67 Total: 1.33 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -2.33 Total: -12.89 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.63 Total: -50.98 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.63 -10.43 -41.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895230090.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.023 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds