Wall clock time and date at job start Mon Mar 30 2020 02:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47142 * 2 1 4 4 C 1.50703 * 109.46620 * 119.99430 * 2 1 3 5 5 C 1.34671 * 126.59320 * 325.02468 * 4 2 1 6 6 N 1.34130 * 108.01764 * 179.97438 * 5 4 2 7 7 C 1.30499 * 109.25655 * 359.97438 * 6 5 4 8 8 C 1.50706 * 125.64512 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.47020 * 275.02395 * 8 7 6 10 10 C 1.46840 * 111.00332 * 294.21448 * 9 8 7 11 11 C 1.53039 * 109.52488 * 174.16442 * 10 9 8 12 12 C 1.53113 * 109.28056 * 59.17695 * 11 10 9 13 13 C 1.53122 * 109.15859 * 302.34499 * 12 11 10 14 14 H 1.08993 * 109.53990 * 297.69251 * 13 12 11 15 15 C 1.50701 * 109.50322 * 177.59441 * 13 12 11 16 16 H 1.08001 * 120.00345 * 240.20507 * 15 13 12 17 17 C 1.37883 * 119.99978 * 60.19750 * 15 13 12 18 18 N 1.31518 * 119.99942 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00282 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47220 * 59.99752 * 19 17 15 21 21 H 1.48498 * 109.47152 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46978 * 300.00133 * 19 17 15 23 23 C 1.46854 * 110.99639 * 170.00102 * 9 8 7 24 24 N 1.35043 * 108.70106 * 0.26369 * 7 6 5 25 25 H 0.96998 * 126.39525 * 179.73009 * 24 7 6 26 26 H 1.08996 * 109.47476 * 300.00751 * 1 2 3 27 27 H 1.09005 * 109.46956 * 60.00737 * 1 2 3 28 28 H 1.08998 * 109.47080 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47476 * 239.99249 * 2 1 3 30 30 H 1.09004 * 109.47369 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.47117 * 299.99439 * 3 2 1 32 32 H 1.08996 * 109.47549 * 59.99293 * 3 2 1 33 33 H 1.07994 * 125.99155 * 359.96511 * 5 4 2 34 34 H 1.09000 * 109.47262 * 35.02759 * 8 7 6 35 35 H 1.09002 * 109.46811 * 155.02839 * 8 7 6 36 36 H 1.09003 * 109.46282 * 294.17487 * 10 9 8 37 37 H 1.08999 * 109.46502 * 54.14272 * 10 9 8 38 38 H 1.09004 * 109.50063 * 299.23463 * 11 10 9 39 39 H 1.09005 * 109.50370 * 179.12123 * 11 10 9 40 40 H 1.08999 * 109.52111 * 182.44160 * 12 11 10 41 41 H 1.08997 * 109.52633 * 62.24966 * 12 11 10 42 42 H 0.96999 * 120.00166 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.46461 * 305.85688 * 23 9 8 44 44 H 1.08998 * 109.46215 * 65.82980 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 6 1.4644 -0.6995 2.4517 6 7 2.2179 -1.4531 3.2663 7 6 3.2307 -1.9308 2.5962 8 6 4.3087 -2.8249 3.1526 9 7 5.3520 -2.0023 3.7793 10 6 6.0502 -1.1855 2.7785 11 6 7.0259 -0.2388 3.4813 12 6 8.0336 -1.0604 4.2899 13 6 7.2779 -1.9379 5.2917 14 1 6.7301 -1.3051 5.9899 15 6 8.2587 -2.7935 6.0512 16 1 8.1886 -3.8700 6.0006 17 6 9.2458 -2.2019 6.8108 18 7 9.3310 -0.8910 6.8727 19 14 10.4621 -3.2624 7.7517 20 1 11.2093 -4.1225 6.7992 21 1 11.4158 -2.3908 8.4838 22 1 9.7285 -4.1170 8.7195 23 6 6.2950 -2.8355 4.5364 24 7 3.1556 -1.4870 1.3230 25 1 3.7800 -1.6835 0.6072 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 0.5609 -0.1758 2.7269 34 1 3.8774 -3.4940 3.8972 35 1 4.7456 -3.4128 2.3454 36 1 6.6012 -1.8360 2.0991 37 1 5.3226 -0.6032 2.2132 38 1 6.4740 0.4213 4.1506 39 1 7.5552 0.3563 2.7372 40 1 8.7037 -0.3890 4.8267 41 1 8.6124 -1.6923 3.6163 42 1 10.0257 -0.4748 7.4067 43 1 5.7451 -3.4514 5.2480 44 1 6.8448 -3.4781 3.8488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895230090.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:53 Heat of formation + Delta-G solvation = 20.071115 kcal Electronic energy + Delta-G solvation = -21843.905088 eV Core-core repulsion = 18795.282941 eV Total energy + Delta-G solvation = -3048.622147 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.11132 -39.77360 -36.56603 -35.60444 -33.69910 -33.38049 -31.72971 -30.18074 -28.01940 -26.93419 -26.89833 -23.82871 -23.50587 -23.24619 -21.80741 -20.55121 -20.31078 -18.55292 -18.25835 -17.00443 -16.55735 -15.95279 -15.85181 -15.51270 -15.10872 -15.04272 -14.85323 -14.62100 -14.45626 -14.16721 -13.76008 -13.56268 -13.44700 -12.98121 -12.86741 -12.79443 -12.60312 -12.54920 -12.27855 -12.05910 -11.93909 -11.88342 -11.74746 -11.40732 -11.00865 -10.86405 -10.80372 -10.68128 -10.37646 -9.26751 -9.07348 -8.06683 -6.21137 1.05225 1.42841 1.44506 1.51906 2.09025 2.19041 2.44618 3.18833 3.20558 3.46091 3.83118 3.98160 4.05298 4.12977 4.24453 4.26534 4.35072 4.45642 4.55793 4.56657 4.59930 4.66666 4.79363 4.83766 4.84869 4.88858 4.94510 5.02608 5.04011 5.16054 5.17671 5.22297 5.35508 5.39699 5.49748 5.53322 5.64038 5.83750 5.93899 6.11626 6.19497 6.24260 6.44381 6.51889 6.91753 7.22638 7.46863 8.98064 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.040560 B = 0.003470 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.169101 B = 8068.382136 C = 8392.731343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.014 4.014 3 C -0.142 4.142 4 C -0.005 4.005 5 C -0.051 4.051 6 N -0.514 5.514 7 C 0.211 3.789 8 C 0.142 3.858 9 N -0.547 5.547 10 C 0.071 3.929 11 C -0.110 4.110 12 C -0.102 4.102 13 C 0.053 3.947 14 H -0.010 1.010 15 C -0.535 4.535 16 H 0.056 0.944 17 C 0.012 3.988 18 N -0.917 5.917 19 Si 0.956 3.044 20 H -0.269 1.269 21 H -0.286 1.286 22 H -0.272 1.272 23 C 0.084 3.916 24 N -0.554 5.554 25 H 0.427 0.573 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.175 0.825 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.070 0.930 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.030 0.970 42 H 0.260 0.740 43 H 0.060 0.940 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.089 0.952 -18.309 23.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.034 4.034 3 C -0.200 4.200 4 C -0.121 4.121 5 C -0.198 4.198 6 N -0.234 5.234 7 C -0.053 4.053 8 C 0.013 3.987 9 N -0.273 5.273 10 C -0.057 4.057 11 C -0.148 4.148 12 C -0.140 4.140 13 C 0.034 3.966 14 H 0.008 0.992 15 C -0.574 4.574 16 H 0.074 0.926 17 C -0.186 4.186 18 N -0.557 5.557 19 Si 0.781 3.219 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.043 4.043 24 N -0.158 5.158 25 H 0.267 0.733 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.192 0.808 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -14.399 1.260 -17.030 22.337 hybrid contribution 1.666 -0.721 -0.532 1.892 sum -12.734 0.538 -17.562 21.699 Atomic orbital electron populations 1.21790 0.92373 1.02334 1.03145 1.19665 0.97070 0.95012 0.91626 1.21845 1.00611 0.94640 1.02865 1.21666 0.90496 1.00614 0.99373 1.22352 1.02811 1.04647 0.90024 1.70181 1.05840 1.13683 1.33737 1.22896 0.98188 1.02459 0.81737 1.20343 0.88334 0.91588 0.98469 1.61784 1.13989 1.25156 1.26351 1.21985 0.95472 0.95527 0.92707 1.21560 0.96835 0.97686 0.98672 1.21443 0.97629 0.98424 0.96488 1.18575 0.92067 0.93312 0.92642 0.99158 1.21502 1.13977 0.93193 1.28717 0.92606 1.25752 0.99424 0.96057 0.97403 1.70046 1.34414 1.10113 1.41111 0.85652 0.78724 0.78658 0.78846 1.19406 1.21146 1.19723 1.21995 0.92473 0.94309 0.95522 1.43174 1.22185 1.38818 1.11637 0.73272 0.92198 0.90143 0.92706 0.89181 0.93596 0.89989 0.92948 0.80782 0.88427 0.91296 0.94248 0.91182 0.94198 0.91141 0.92522 0.95153 0.93124 0.92151 0.95285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.79 71.98 0.63 -0.92 16 2 C -0.01 -0.19 3.38 -11.54 -0.04 -0.23 16 3 C -0.14 -1.89 9.17 71.98 0.66 -1.23 16 4 C 0.00 -0.10 6.16 40.95 0.25 0.15 16 5 C -0.05 -1.37 11.06 83.52 0.92 -0.45 16 6 N -0.51 -17.44 11.25 -188.13 -2.12 -19.56 16 7 C 0.21 6.19 6.65 138.13 0.92 7.11 16 8 C 0.14 4.19 5.59 85.56 0.48 4.67 16 9 N -0.55 -20.19 4.65 -900.92 -4.19 -24.37 16 10 C 0.07 2.37 5.31 86.33 0.46 2.82 16 11 C -0.11 -4.34 6.09 30.65 0.19 -4.15 16 12 C -0.10 -4.91 5.03 30.67 0.15 -4.76 16 13 C 0.05 2.74 2.26 -11.49 -0.03 2.71 16 14 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 15 C -0.54 -29.87 8.56 25.60 0.22 -29.65 16 16 H 0.06 3.01 7.74 -2.91 -0.02 2.98 16 17 C 0.01 0.69 5.30 84.66 0.45 1.14 16 18 N -0.92 -54.27 11.36 21.45 0.24 -54.03 16 19 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 23 C 0.08 3.55 4.68 86.33 0.40 3.95 16 24 N -0.55 -12.11 5.53 -174.59 -0.97 -13.08 16 25 H 0.43 6.70 8.96 -92.71 -0.83 5.87 16 26 H 0.06 0.72 7.32 -2.39 -0.02 0.70 16 27 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.18 4.02 7.40 -2.91 -0.02 3.99 16 34 H 0.10 2.96 7.99 -2.39 -0.02 2.94 16 35 H 0.07 1.64 8.12 -2.39 -0.02 1.62 16 36 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 2.10 6.62 -2.39 -0.02 2.09 16 38 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 40 H 0.06 3.12 6.17 -2.39 -0.01 3.11 16 41 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.06 2.54 8.02 -2.39 -0.02 2.52 16 44 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -68.33 346.03 0.81 -67.52 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.14 Total: 16.29 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: 5.67 Total: -18.84 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -7.02 Total: -111.04 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -68.33 0.81 -67.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895230090.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.588 kcal (2) G-P(sol) polarization free energy of solvation -68.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds