Wall clock time and date at job start Mon Mar 30 2020 02:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46841 * 2 1 4 4 C 1.50706 * 109.47129 * 119.99421 * 2 1 3 5 5 C 1.34665 * 126.59040 * 325.02903 * 4 2 1 6 6 N 1.34127 * 108.01668 * 179.69266 * 5 4 2 7 7 C 1.30500 * 109.25894 * 0.26753 * 6 5 4 8 8 C 1.50698 * 125.65161 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.47119 * 274.97380 * 8 7 6 10 10 C 1.46840 * 110.99907 * 45.78946 * 9 8 7 11 11 C 1.53043 * 109.52271 * 185.84205 * 10 9 8 12 12 C 1.53123 * 109.27581 * 300.81762 * 11 10 9 13 13 C 1.53126 * 109.15855 * 57.65418 * 12 11 10 14 14 H 1.08999 * 109.49946 * 62.29047 * 13 12 11 15 15 C 1.50698 * 109.49987 * 182.40336 * 13 12 11 16 16 H 1.08001 * 119.99941 * 119.80901 * 15 13 12 17 17 C 1.37875 * 119.99937 * 299.80141 * 15 13 12 18 18 N 1.31518 * 120.00264 * 0.02562 * 17 15 13 19 19 Si 1.86810 * 120.00025 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46630 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47038 * 119.99997 * 19 17 15 22 22 H 1.48496 * 109.46991 * 240.00251 * 19 17 15 23 23 C 1.46847 * 110.99926 * 169.99840 * 9 8 7 24 24 N 1.35045 * 108.69584 * 359.97438 * 7 6 5 25 25 H 0.97005 * 126.39044 * 180.02562 * 24 7 6 26 26 H 1.09002 * 109.46976 * 60.00066 * 1 2 3 27 27 H 1.08995 * 109.46763 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46989 * 300.00113 * 1 2 3 29 29 H 1.08989 * 109.47517 * 239.99786 * 2 1 3 30 30 H 1.09001 * 109.46586 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46712 * 299.99271 * 3 2 1 32 32 H 1.08995 * 109.46971 * 59.99967 * 3 2 1 33 33 H 1.08002 * 125.99463 * 359.96185 * 5 4 2 34 34 H 1.09002 * 109.46880 * 34.97061 * 8 7 6 35 35 H 1.08992 * 109.47338 * 154.96927 * 8 7 6 36 36 H 1.09000 * 109.46491 * 305.85386 * 10 9 8 37 37 H 1.09001 * 109.46802 * 65.82302 * 10 9 8 38 38 H 1.09000 * 109.50109 * 180.88324 * 11 10 9 39 39 H 1.08992 * 109.53750 * 60.77961 * 11 10 9 40 40 H 1.09000 * 109.52541 * 297.74789 * 12 11 10 41 41 H 1.09000 * 109.57268 * 177.59284 * 12 11 10 42 42 H 0.97000 * 119.99695 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.46730 * 294.17750 * 23 9 8 44 44 H 1.09002 * 109.46416 * 54.14552 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2306 5 6 1.4646 -0.6996 2.4516 6 7 2.2148 -1.4580 3.2646 7 6 3.2289 -1.9338 2.5952 8 6 4.3042 -2.8319 3.1502 9 7 5.3474 -2.0137 3.7829 10 6 4.7563 -0.9758 4.6370 11 6 5.8605 -0.0553 5.1619 12 6 6.8724 -0.8832 5.9589 13 6 7.4372 -1.9872 5.0605 14 1 7.9652 -1.5374 4.2197 15 6 8.3901 -2.8433 5.8542 16 1 8.1956 -3.8988 5.9746 17 6 9.5105 -2.2791 6.4265 18 7 9.7472 -0.9937 6.2802 19 14 10.6921 -3.3406 7.4098 20 1 10.2032 -4.7427 7.4241 21 1 12.0382 -3.2926 6.7844 22 1 10.7746 -2.8303 8.8019 23 6 6.2873 -2.8516 4.5386 24 7 3.1545 -1.4887 1.3224 25 1 3.7778 -1.6869 0.6060 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 0.5610 -0.1759 2.7269 34 1 3.8701 -3.5035 3.8909 35 1 4.7420 -3.4171 2.3416 36 1 4.0417 -0.3917 4.0571 37 1 4.2445 -1.4449 5.4773 38 1 5.4232 0.7055 5.8084 39 1 6.3637 0.4253 4.3231 40 1 6.3779 -1.3320 6.8204 41 1 7.6837 -0.2396 6.2990 42 1 10.5353 -0.5969 6.6832 43 1 5.7684 -3.3120 5.3794 44 1 6.6847 -3.6299 3.8871 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895230091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:56 Heat of formation + Delta-G solvation = 40.646542 kcal Electronic energy + Delta-G solvation = -21871.367788 eV Core-core repulsion = 18823.637859 eV Total energy + Delta-G solvation = -3047.729930 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.14214 -38.10777 -35.77832 -33.81136 -32.42716 -31.81673 -29.93821 -28.82762 -27.42664 -25.72269 -24.88208 -22.86980 -22.03112 -21.44312 -20.64701 -19.57376 -18.53165 -17.37429 -16.41072 -15.61442 -14.96888 -14.69679 -14.57738 -14.26060 -13.92816 -13.81425 -13.67887 -13.14964 -13.09349 -12.70234 -12.42599 -12.28355 -12.04973 -11.76207 -11.61006 -11.44733 -11.35530 -11.29107 -10.94364 -10.64024 -10.62692 -10.09817 -9.84637 -9.84273 -9.73069 -9.42827 -9.01550 -8.66078 -8.29987 -8.20294 -7.63254 -5.95184 -4.01359 2.05438 3.09530 3.18700 3.31487 3.39557 3.43208 4.39398 4.46340 4.60620 4.62867 4.75184 4.87738 5.18295 5.22091 5.35025 5.35943 5.44011 5.52693 5.57876 5.67177 5.73969 5.80642 5.89054 5.94262 5.99493 6.04926 6.19590 6.33499 6.39559 6.44204 6.60305 6.79863 6.80754 6.85036 6.99088 7.25929 7.40808 7.42966 7.69081 7.76351 7.81651 8.10685 8.19518 8.20789 8.50458 9.02930 9.62882 11.10801 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.040794 B = 0.003441 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.204906 B = 8134.965513 C = 8331.913120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.017 4.017 3 C -0.144 4.144 4 C -0.026 4.026 5 C -0.022 4.022 6 N -0.486 5.486 7 C 0.228 3.772 8 C 0.133 3.867 9 N -0.535 5.535 10 C 0.065 3.935 11 C -0.117 4.117 12 C -0.110 4.110 13 C 0.056 3.944 14 H 0.033 0.967 15 C -0.513 4.513 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.888 5.888 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.067 3.933 24 N -0.555 5.555 25 H 0.417 0.583 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.164 0.836 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.028 0.972 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.030 0.970 41 H 0.090 0.910 42 H 0.259 0.741 43 H 0.023 0.977 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.914 2.041 -12.879 20.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.036 4.036 3 C -0.202 4.202 4 C -0.142 4.142 5 C -0.170 4.170 6 N -0.206 5.206 7 C -0.036 4.036 8 C 0.004 3.996 9 N -0.261 5.261 10 C -0.062 4.062 11 C -0.155 4.155 12 C -0.149 4.149 13 C 0.038 3.962 14 H 0.051 0.949 15 C -0.552 4.552 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.527 5.527 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.059 4.059 24 N -0.157 5.157 25 H 0.255 0.745 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.181 0.819 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.049 0.951 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.042 0.958 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.711 2.256 -12.324 20.095 hybrid contribution 0.684 -0.831 0.033 1.076 sum -15.027 1.425 -12.291 19.466 Atomic orbital electron populations 1.21792 0.93511 1.02247 1.02256 1.19507 0.96167 0.95187 0.92784 1.21860 1.01304 0.94817 1.02195 1.21155 0.91784 1.02394 0.98885 1.21993 1.01948 1.03746 0.89333 1.70320 1.04804 1.13191 1.32280 1.23092 0.97898 1.01424 0.81190 1.20481 0.88161 0.92232 0.98770 1.62253 1.14796 1.14137 1.34874 1.22079 0.96102 0.93442 0.94622 1.21681 0.96857 0.97421 0.99505 1.21654 0.97152 0.98880 0.97172 1.18653 0.90376 0.92384 0.94831 0.94854 1.21183 1.06716 0.94875 1.32458 0.92745 1.24940 0.97668 0.94927 0.96352 1.69912 1.27313 1.10487 1.44975 0.86574 0.81016 0.80715 0.79894 1.19844 1.21096 1.21101 1.22352 0.93734 0.95463 0.94379 1.43109 1.21712 1.38743 1.12169 0.74501 0.92100 0.92370 0.91942 0.90898 0.92618 0.92173 0.91997 0.81875 0.92122 0.89784 0.91644 0.95411 0.93646 0.92555 0.95090 0.89212 0.93144 0.95844 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.79 37.16 0.33 -0.64 16 2 C -0.02 -0.14 3.38 -91.76 -0.31 -0.45 16 3 C -0.14 -1.15 9.18 37.16 0.34 -0.81 16 4 C -0.03 -0.30 6.16 -81.60 -0.50 -0.80 16 5 C -0.02 -0.29 11.06 -17.81 -0.20 -0.49 16 6 N -0.49 -7.89 9.95 -10.82 -0.11 -8.00 16 7 C 0.23 3.42 6.13 -155.41 -0.95 2.46 16 8 C 0.13 2.06 5.90 -4.98 -0.03 2.03 16 9 N -0.53 -10.07 4.80 -236.12 -1.13 -11.21 16 10 C 0.07 1.28 4.88 -3.83 -0.02 1.26 16 11 C -0.12 -2.45 6.09 -26.65 -0.16 -2.61 16 12 C -0.11 -2.70 5.03 -26.60 -0.13 -2.83 16 13 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 14 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 15 C -0.51 -14.10 8.56 -34.44 -0.29 -14.39 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.73 5.31 -17.82 -0.09 1.64 16 18 N -0.89 -25.51 11.36 55.43 0.63 -24.88 16 19 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.07 1.43 4.65 -3.84 -0.02 1.41 16 24 N -0.56 -6.73 6.15 -6.54 -0.04 -6.77 16 25 H 0.42 4.00 8.96 -40.82 -0.37 3.64 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.43 7.32 -51.93 -0.38 0.05 16 29 H 0.07 0.53 8.14 -51.94 -0.42 0.11 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.16 1.84 7.40 -52.49 -0.39 1.45 16 34 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.26 5.79 -51.93 -0.30 0.96 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 2.43 6.16 -51.93 -0.32 2.11 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.06 1.22 8.12 -51.93 -0.42 0.79 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -30.36 344.22 -10.37 -40.73 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -7.63 Total: 1.65 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -2.25 Total: -13.01 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.65 Total: -50.86 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.36 -10.37 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895230091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.375 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds