Wall clock time and date at job start Mon Mar 30 2020 02:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46841 * 2 1 4 4 C 1.50706 * 109.47129 * 119.99421 * 2 1 3 5 5 C 1.34665 * 126.59040 * 325.02903 * 4 2 1 6 6 N 1.34127 * 108.01668 * 179.69266 * 5 4 2 7 7 C 1.30500 * 109.25894 * 0.26753 * 6 5 4 8 8 C 1.50698 * 125.65161 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.47119 * 274.97380 * 8 7 6 10 10 C 1.46840 * 110.99907 * 45.78946 * 9 8 7 11 11 C 1.53043 * 109.52271 * 185.84205 * 10 9 8 12 12 C 1.53123 * 109.27581 * 300.81762 * 11 10 9 13 13 C 1.53126 * 109.15855 * 57.65418 * 12 11 10 14 14 H 1.08999 * 109.49946 * 62.29047 * 13 12 11 15 15 C 1.50698 * 109.49987 * 182.40336 * 13 12 11 16 16 H 1.08001 * 119.99941 * 119.80901 * 15 13 12 17 17 C 1.37875 * 119.99937 * 299.80141 * 15 13 12 18 18 N 1.31518 * 120.00264 * 0.02562 * 17 15 13 19 19 Si 1.86810 * 120.00025 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46630 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47038 * 119.99997 * 19 17 15 22 22 H 1.48496 * 109.46991 * 240.00251 * 19 17 15 23 23 C 1.46847 * 110.99926 * 169.99840 * 9 8 7 24 24 N 1.35045 * 108.69584 * 359.97438 * 7 6 5 25 25 H 0.97005 * 126.39044 * 180.02562 * 24 7 6 26 26 H 1.09002 * 109.46976 * 60.00066 * 1 2 3 27 27 H 1.08995 * 109.46763 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46989 * 300.00113 * 1 2 3 29 29 H 1.08989 * 109.47517 * 239.99786 * 2 1 3 30 30 H 1.09001 * 109.46586 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46712 * 299.99271 * 3 2 1 32 32 H 1.08995 * 109.46971 * 59.99967 * 3 2 1 33 33 H 1.08002 * 125.99463 * 359.96185 * 5 4 2 34 34 H 1.09002 * 109.46880 * 34.97061 * 8 7 6 35 35 H 1.08992 * 109.47338 * 154.96927 * 8 7 6 36 36 H 1.09000 * 109.46491 * 305.85386 * 10 9 8 37 37 H 1.09001 * 109.46802 * 65.82302 * 10 9 8 38 38 H 1.09000 * 109.50109 * 180.88324 * 11 10 9 39 39 H 1.08992 * 109.53750 * 60.77961 * 11 10 9 40 40 H 1.09000 * 109.52541 * 297.74789 * 12 11 10 41 41 H 1.09000 * 109.57268 * 177.59284 * 12 11 10 42 42 H 0.97000 * 119.99695 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.46730 * 294.17750 * 23 9 8 44 44 H 1.09002 * 109.46416 * 54.14552 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2306 5 6 1.4646 -0.6996 2.4516 6 7 2.2148 -1.4580 3.2646 7 6 3.2289 -1.9338 2.5952 8 6 4.3042 -2.8319 3.1502 9 7 5.3474 -2.0137 3.7829 10 6 4.7563 -0.9758 4.6370 11 6 5.8605 -0.0553 5.1619 12 6 6.8724 -0.8832 5.9589 13 6 7.4372 -1.9872 5.0605 14 1 7.9652 -1.5374 4.2197 15 6 8.3901 -2.8433 5.8542 16 1 8.1956 -3.8988 5.9746 17 6 9.5105 -2.2791 6.4265 18 7 9.7472 -0.9937 6.2802 19 14 10.6921 -3.3406 7.4098 20 1 10.2032 -4.7427 7.4241 21 1 12.0382 -3.2926 6.7844 22 1 10.7746 -2.8303 8.8019 23 6 6.2873 -2.8516 4.5386 24 7 3.1545 -1.4887 1.3224 25 1 3.7778 -1.6869 0.6060 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 0.5610 -0.1759 2.7269 34 1 3.8701 -3.5035 3.8909 35 1 4.7420 -3.4171 2.3416 36 1 4.0417 -0.3917 4.0571 37 1 4.2445 -1.4449 5.4773 38 1 5.4232 0.7055 5.8084 39 1 6.3637 0.4253 4.3231 40 1 6.3779 -1.3320 6.8204 41 1 7.6837 -0.2396 6.2990 42 1 10.5353 -0.5969 6.6832 43 1 5.7684 -3.3120 5.3794 44 1 6.6847 -3.6299 3.8871 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895230091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:56 Heat of formation + Delta-G solvation = 22.194523 kcal Electronic energy + Delta-G solvation = -21872.167928 eV Core-core repulsion = 18823.637859 eV Total energy + Delta-G solvation = -3048.530069 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.16510 -39.75495 -36.58672 -35.57311 -33.72888 -33.36277 -31.74505 -30.11202 -28.02224 -26.98461 -26.87155 -23.86230 -23.59488 -23.08542 -21.75575 -20.53291 -20.36550 -18.52948 -18.23275 -17.07874 -16.57827 -15.96767 -15.62578 -15.53365 -15.15808 -15.01791 -14.91245 -14.69669 -14.38254 -14.16513 -13.73879 -13.57090 -13.43429 -12.95885 -12.89757 -12.83690 -12.54061 -12.49639 -12.34664 -12.06546 -11.94484 -11.83812 -11.73289 -11.40981 -10.99880 -10.88801 -10.80361 -10.66052 -10.37327 -9.38419 -9.03252 -8.06988 -6.20917 1.04832 1.41561 1.43385 1.54673 2.07445 2.17509 2.44508 3.16669 3.20416 3.46739 3.83598 3.98296 4.11123 4.18370 4.25920 4.27863 4.36854 4.46671 4.56539 4.58966 4.64381 4.72180 4.77475 4.84798 4.89468 4.91519 4.96916 5.02701 5.09193 5.16395 5.18450 5.22959 5.34726 5.39863 5.50308 5.53221 5.64615 5.82773 5.93156 6.08487 6.17689 6.20683 6.43620 6.51046 6.91707 7.15332 7.47028 8.98113 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.040794 B = 0.003441 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.204906 B = 8134.965513 C = 8331.913120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.015 4.015 3 C -0.142 4.142 4 C -0.006 4.006 5 C -0.047 4.047 6 N -0.517 5.517 7 C 0.206 3.794 8 C 0.137 3.863 9 N -0.538 5.538 10 C 0.079 3.921 11 C -0.109 4.109 12 C -0.103 4.103 13 C 0.055 3.945 14 H 0.000 1.000 15 C -0.533 4.533 16 H 0.055 0.945 17 C 0.013 3.987 18 N -0.917 5.917 19 Si 0.955 3.045 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.283 1.283 23 C 0.081 3.919 24 N -0.546 5.546 25 H 0.430 0.570 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.178 0.822 34 H 0.057 0.943 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.018 0.982 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.021 0.979 41 H 0.059 0.941 42 H 0.260 0.740 43 H 0.018 0.982 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.019 1.683 -14.363 22.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.035 4.035 3 C -0.200 4.200 4 C -0.123 4.123 5 C -0.195 4.195 6 N -0.238 5.238 7 C -0.058 4.058 8 C 0.008 3.992 9 N -0.264 5.264 10 C -0.049 4.049 11 C -0.147 4.147 12 C -0.141 4.141 13 C 0.036 3.964 14 H 0.018 0.982 15 C -0.572 4.572 16 H 0.073 0.927 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.781 3.219 20 H -0.190 1.190 21 H -0.206 1.206 22 H -0.209 1.209 23 C -0.047 4.047 24 N -0.150 5.150 25 H 0.270 0.730 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.195 0.805 34 H 0.076 0.924 35 H 0.128 0.872 36 H 0.091 0.909 37 H 0.036 0.964 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.040 0.960 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.036 0.964 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.819 1.886 -13.829 21.856 hybrid contribution 0.971 -0.665 0.430 1.253 sum -15.847 1.220 -13.400 20.789 Atomic orbital electron populations 1.21787 0.92270 1.02328 1.03185 1.19668 0.97105 0.95008 0.91674 1.21843 1.00522 0.94670 1.02918 1.21692 0.90540 1.00600 0.99479 1.22342 1.02821 1.04420 0.89936 1.70235 1.05685 1.14068 1.33810 1.22818 0.98029 1.02645 0.82308 1.20483 0.87574 0.91990 0.99167 1.62161 1.15959 1.14303 1.33943 1.21894 0.95197 0.93339 0.94425 1.21586 0.96496 0.97602 0.99018 1.21470 0.96894 0.98581 0.97159 1.18568 0.91392 0.92825 0.93606 0.98166 1.21543 1.07566 0.95203 1.32854 0.92713 1.25737 0.99381 0.96105 0.97380 1.70052 1.27809 1.11985 1.45759 0.85552 0.78791 0.79302 0.78267 1.18997 1.20613 1.20853 1.22047 0.92985 0.95001 0.94633 1.43094 1.22015 1.38154 1.11703 0.73048 0.90198 0.92716 0.92063 0.89333 0.93791 0.90043 0.92753 0.80511 0.92449 0.87226 0.90899 0.96374 0.92076 0.93290 0.96034 0.92275 0.93116 0.96393 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.79 71.98 0.63 -0.87 16 2 C -0.01 -0.20 3.38 -11.53 -0.04 -0.24 16 3 C -0.14 -1.92 9.18 71.98 0.66 -1.26 16 4 C -0.01 -0.13 6.16 40.95 0.25 0.13 16 5 C -0.05 -1.21 11.06 83.52 0.92 -0.29 16 6 N -0.52 -16.34 9.95 -188.13 -1.87 -18.21 16 7 C 0.21 5.90 6.13 138.13 0.85 6.75 16 8 C 0.14 4.06 5.90 85.56 0.51 4.56 16 9 N -0.54 -19.96 4.80 -900.95 -4.32 -24.29 16 10 C 0.08 3.08 4.88 86.33 0.42 3.50 16 11 C -0.11 -4.61 6.09 30.65 0.19 -4.43 16 12 C -0.10 -5.16 5.03 30.68 0.15 -5.00 16 13 C 0.05 2.83 2.26 -11.49 -0.03 2.81 16 14 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 15 C -0.53 -29.69 8.56 25.60 0.22 -29.47 16 16 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 17 C 0.01 0.70 5.31 84.65 0.45 1.15 16 18 N -0.92 -53.82 11.36 21.45 0.24 -53.58 16 19 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 23 C 0.08 3.42 4.65 86.32 0.40 3.82 16 24 N -0.55 -12.20 6.15 -174.60 -1.07 -13.27 16 25 H 0.43 7.25 8.96 -92.70 -0.83 6.42 16 26 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.69 7.32 -2.39 -0.02 0.67 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.18 3.77 7.40 -2.91 -0.02 3.75 16 34 H 0.06 1.76 8.08 -2.39 -0.02 1.74 16 35 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.07 2.76 5.79 -2.39 -0.01 2.74 16 37 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.06 3.32 6.16 -2.39 -0.01 3.31 16 42 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 43 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.07 2.82 8.12 -2.39 -0.02 2.80 16 Total: -1.00 -65.98 344.22 0.73 -65.25 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.14 Total: 16.91 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 5.59 Total: -18.85 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -7.03 Total: -109.35 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -65.98 0.73 -65.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895230091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.446 kcal (2) G-P(sol) polarization free energy of solvation -65.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds