Wall clock time and date at job start Mon Mar 30 2020 02:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30836 * 125.90309 * 2 1 4 4 N 1.40080 * 108.20867 * 179.81600 * 3 2 1 5 5 C 1.46508 * 126.03855 * 180.23079 * 4 3 2 6 6 C 1.52994 * 109.47062 * 300.15480 * 5 4 3 7 7 C 1.53004 * 109.46651 * 60.15606 * 5 4 3 8 8 C 1.34946 * 107.92639 * 0.36494 * 4 3 2 9 9 C 1.50703 * 126.12821 * 179.90663 * 8 4 3 10 10 C 1.35310 * 107.74594 * 359.64128 * 8 4 3 11 11 C 1.50706 * 126.04281 * 180.25420 * 10 8 4 12 12 N 1.46896 * 109.47379 * 89.99831 * 11 10 8 13 13 C 1.47484 * 110.99558 * 265.97117 * 12 11 10 14 14 C 1.53508 * 87.93188 * 221.29599 * 13 12 11 15 15 C 1.50703 * 114.34501 * 139.68305 * 14 13 12 16 16 H 1.08002 * 120.00210 * 266.07781 * 15 14 13 17 17 C 1.37878 * 119.99700 * 86.08142 * 15 14 13 18 18 N 1.31516 * 120.00116 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99890 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47282 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47344 * 119.99599 * 19 17 15 22 22 H 1.48500 * 109.47105 * 239.99366 * 19 17 15 23 23 C 1.47479 * 111.00116 * 170.00452 * 12 11 10 24 24 H 1.09003 * 109.46956 * 269.95831 * 1 2 3 25 25 H 1.08999 * 109.47037 * 29.95728 * 1 2 3 26 26 H 1.09003 * 109.47071 * 149.95864 * 1 2 3 27 27 H 1.09000 * 109.46943 * 180.15202 * 5 4 3 28 28 H 1.09000 * 109.47469 * 60.00044 * 6 5 4 29 29 H 1.09002 * 109.46981 * 179.97438 * 6 5 4 30 30 H 1.08998 * 109.47250 * 300.00208 * 6 5 4 31 31 H 1.08996 * 109.47376 * 59.99772 * 7 5 4 32 32 H 1.09002 * 109.46901 * 180.02562 * 7 5 4 33 33 H 1.09000 * 109.47117 * 299.99489 * 7 5 4 34 34 H 1.09002 * 109.47152 * 269.68605 * 9 8 4 35 35 H 1.09001 * 109.46980 * 149.68706 * 9 8 4 36 36 H 1.09004 * 109.47113 * 29.68687 * 9 8 4 37 37 H 1.08997 * 109.46991 * 209.99910 * 11 10 8 38 38 H 1.08996 * 109.46546 * 329.99206 * 11 10 8 39 39 H 1.08993 * 113.47901 * 336.06328 * 13 12 11 40 40 H 1.09000 * 113.47436 * 106.53531 * 13 12 11 41 41 H 1.09004 * 114.17373 * 272.38253 * 14 13 12 42 42 H 0.97000 * 119.99846 * 180.02562 * 18 17 15 43 43 H 1.08996 * 113.47291 * 253.47267 * 23 12 11 44 44 H 1.09006 * 113.47280 * 23.92836 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0043 5 6 4.7899 1.5007 0.0105 6 6 4.7772 2.3890 -1.2351 7 6 4.7716 2.3787 1.2634 8 6 3.6142 -0.7154 -0.0013 9 6 4.8350 -1.5990 -0.0015 10 6 2.3272 -1.1331 -0.0009 11 6 1.8599 -2.5659 -0.0006 12 7 1.7086 -3.0314 1.3844 13 6 2.9317 -3.7114 1.8499 14 6 2.0287 -4.7563 2.5203 15 6 2.5218 -6.1749 2.3959 16 1 2.1692 -6.8005 1.5891 17 6 3.4232 -6.6743 3.3120 18 7 3.8530 -5.9124 4.2941 19 14 4.0350 -8.4324 3.1574 20 1 3.4045 -9.0738 1.9758 21 1 5.5107 -8.4303 2.9915 22 1 3.6757 -9.1911 4.3824 23 6 1.0304 -4.3401 1.4310 24 1 -0.3633 -0.0007 1.0277 25 1 -0.3633 0.8904 -0.5132 26 1 -0.3633 -0.8896 -0.5145 27 1 5.6908 0.8870 0.0100 28 1 3.8764 3.0027 -1.2346 29 1 5.6558 3.0341 -1.2302 30 1 4.7902 1.7635 -2.1276 31 1 4.7806 1.7458 2.1508 32 1 5.6502 3.0238 1.2678 33 1 3.8707 2.9923 1.2639 34 1 5.1291 -1.8123 -1.0292 35 1 4.6077 -2.5329 0.5126 36 1 5.6513 -1.0909 0.5120 37 1 0.9009 -2.6353 -0.5141 38 1 2.5931 -3.1871 -0.5148 39 1 3.5380 -4.1170 1.0401 40 1 3.5134 -3.1218 2.5584 41 1 1.7194 -4.4954 3.5324 42 1 4.4873 -6.2637 4.9384 43 1 0.0008 -4.2833 1.7843 44 1 1.1293 -4.9135 0.5092 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895342928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:09 Heat of formation + Delta-G solvation = 95.921590 kcal Electronic energy + Delta-G solvation = -22072.877617 eV Core-core repulsion = 19027.544593 eV Total energy + Delta-G solvation = -3045.333024 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.17818 -38.71791 -35.87630 -32.96539 -32.54944 -31.55845 -29.22042 -27.45342 -27.37338 -26.82234 -24.95832 -24.66158 -22.37842 -21.58919 -19.18727 -18.75797 -18.52564 -16.61893 -16.47967 -15.37554 -14.76766 -14.66396 -14.36939 -14.02534 -13.69730 -13.63724 -13.30949 -13.17540 -13.02416 -12.64433 -12.47653 -12.31322 -12.07300 -11.92819 -11.91795 -11.74409 -11.44782 -11.34546 -11.21604 -11.01322 -10.97149 -10.53442 -10.33261 -10.08493 -9.63961 -9.23995 -8.88760 -8.74193 -8.42828 -7.95669 -7.77587 -6.03760 -4.07977 2.13440 2.64733 3.06733 3.27827 3.36451 3.39998 4.38635 4.41448 4.77029 4.79432 4.89069 5.02358 5.20436 5.24424 5.26980 5.34140 5.44982 5.49489 5.54099 5.57486 5.60936 5.64529 5.83147 5.86234 5.93450 5.99860 6.05779 6.10891 6.15178 6.21636 6.38985 6.42497 6.50371 6.60386 6.74782 6.83626 7.03163 7.18964 7.31426 7.35264 7.76221 7.95094 8.06665 8.19538 8.40872 8.95808 9.56867 11.05715 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023113 B = 0.004273 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.137498 B = 6551.625136 C = 7250.727722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.086 3.914 3 N -0.304 5.304 4 N -0.370 5.370 5 C 0.158 3.842 6 C -0.158 4.158 7 C -0.160 4.160 8 C 0.089 3.911 9 C -0.100 4.100 10 C -0.210 4.210 11 C 0.098 3.902 12 N -0.476 5.476 13 C 0.009 3.991 14 C 0.040 3.960 15 C -0.514 4.514 16 H 0.058 0.942 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.007 4.007 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.260 0.740 43 H 0.060 0.940 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.652 13.670 -10.068 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.080 4.080 3 N -0.126 5.126 4 N -0.154 5.154 5 C 0.056 3.944 6 C -0.216 4.216 7 C -0.218 4.218 8 C -0.038 4.038 9 C -0.158 4.158 10 C -0.221 4.221 11 C -0.032 4.032 12 N -0.198 5.198 13 C -0.120 4.120 14 C 0.021 3.979 15 C -0.552 4.552 16 H 0.076 0.924 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.209 1.209 23 C -0.136 4.136 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.668 15.645 -9.583 18.422 hybrid contribution 0.919 -2.351 -0.542 2.582 sum 2.587 13.294 -10.125 16.910 Atomic orbital electron populations 1.20091 0.87131 1.02285 1.02969 1.22089 0.96581 0.90312 0.99013 1.77128 0.86239 1.22595 1.26640 1.48446 1.04973 1.03635 1.58328 1.21189 0.84642 0.91710 0.96877 1.22108 1.03119 0.99795 0.96573 1.22121 1.03049 0.99931 0.96703 1.20800 0.96964 0.84344 1.01685 1.20602 0.92952 0.99445 1.02816 1.19568 0.90838 0.96032 1.15656 1.20834 0.99391 0.90303 0.92628 1.68910 1.12279 1.21915 1.16706 1.24056 0.93109 0.96152 0.98718 1.20098 0.90286 0.93559 0.93960 1.21094 1.25414 0.96988 1.11750 0.92406 1.25012 0.96290 0.97350 0.94937 1.69987 1.31717 1.35946 1.14734 0.86593 0.78546 0.85116 0.78086 1.19717 1.21054 1.20948 1.23998 0.99350 0.89718 1.00502 0.90461 0.91747 0.90774 0.88453 0.91201 0.91046 0.92279 0.91936 0.91053 0.91203 0.90775 0.88558 0.91532 0.91499 0.94028 0.93048 0.92251 0.91946 0.92997 0.92110 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.26 36.00 0.37 -0.52 16 2 C 0.09 1.43 7.22 -82.40 -0.59 0.83 16 3 N -0.30 -5.05 12.43 33.67 0.42 -4.64 16 4 N -0.37 -5.56 3.28 -50.69 -0.17 -5.73 16 5 C 0.16 1.76 3.64 -67.93 -0.25 1.51 16 6 C -0.16 -1.49 9.45 37.15 0.35 -1.14 16 7 C -0.16 -1.67 9.46 37.16 0.35 -1.32 16 8 C 0.09 1.42 6.93 -82.27 -0.57 0.85 16 9 C -0.10 -1.37 9.56 36.01 0.34 -1.02 16 10 C -0.21 -3.61 5.68 -105.05 -0.60 -4.21 16 11 C 0.10 1.72 4.73 -4.98 -0.02 1.70 16 12 N -0.48 -9.75 6.32 -246.11 -1.55 -11.30 16 13 C 0.01 0.19 5.90 -7.55 -0.04 0.15 16 14 C 0.04 1.00 3.76 -91.24 -0.34 0.66 16 15 C -0.51 -13.87 8.83 -34.44 -0.30 -14.17 16 16 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 17 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 18 N -0.89 -25.43 13.26 55.43 0.74 -24.70 16 19 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C -0.01 -0.15 7.25 -7.55 -0.05 -0.20 16 24 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.91 7.26 -51.93 -0.38 0.54 16 27 H 0.10 0.93 6.66 -51.93 -0.35 0.59 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.52 5.19 -51.93 -0.27 1.25 16 36 H 0.07 0.79 7.08 -51.93 -0.37 0.42 16 37 H 0.07 1.09 7.19 -51.93 -0.37 0.71 16 38 H 0.04 0.73 6.93 -51.93 -0.36 0.37 16 39 H 0.05 1.15 6.44 -51.93 -0.33 0.82 16 40 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.06 1.73 8.11 -51.93 -0.42 1.31 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.05 1.06 7.87 -51.93 -0.41 0.66 16 LS Contribution 352.69 15.07 5.31 5.31 Total: -1.00 -30.43 352.69 -9.19 -39.61 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.45 Total: 0.75 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -1.46 Total: -15.14 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.57 Total: -46.36 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.43 -9.19 -39.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895342928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.535 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds