Wall clock time and date at job start Mon Mar 30 2020 02:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30836 * 125.90309 * 2 1 4 4 N 1.40080 * 108.20867 * 179.81600 * 3 2 1 5 5 C 1.46508 * 126.03855 * 180.23079 * 4 3 2 6 6 C 1.52994 * 109.47062 * 300.15480 * 5 4 3 7 7 C 1.53004 * 109.46651 * 60.15606 * 5 4 3 8 8 C 1.34946 * 107.92639 * 0.36494 * 4 3 2 9 9 C 1.50703 * 126.12821 * 179.90663 * 8 4 3 10 10 C 1.35310 * 107.74594 * 359.64128 * 8 4 3 11 11 C 1.50706 * 126.04281 * 180.25420 * 10 8 4 12 12 N 1.46896 * 109.47379 * 89.99831 * 11 10 8 13 13 C 1.47484 * 110.99558 * 265.97117 * 12 11 10 14 14 C 1.53508 * 87.93188 * 221.29599 * 13 12 11 15 15 C 1.50703 * 114.34501 * 139.68305 * 14 13 12 16 16 H 1.08002 * 120.00210 * 266.07781 * 15 14 13 17 17 C 1.37878 * 119.99700 * 86.08142 * 15 14 13 18 18 N 1.31516 * 120.00116 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99890 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47282 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47344 * 119.99599 * 19 17 15 22 22 H 1.48500 * 109.47105 * 239.99366 * 19 17 15 23 23 C 1.47479 * 111.00116 * 170.00452 * 12 11 10 24 24 H 1.09003 * 109.46956 * 269.95831 * 1 2 3 25 25 H 1.08999 * 109.47037 * 29.95728 * 1 2 3 26 26 H 1.09003 * 109.47071 * 149.95864 * 1 2 3 27 27 H 1.09000 * 109.46943 * 180.15202 * 5 4 3 28 28 H 1.09000 * 109.47469 * 60.00044 * 6 5 4 29 29 H 1.09002 * 109.46981 * 179.97438 * 6 5 4 30 30 H 1.08998 * 109.47250 * 300.00208 * 6 5 4 31 31 H 1.08996 * 109.47376 * 59.99772 * 7 5 4 32 32 H 1.09002 * 109.46901 * 180.02562 * 7 5 4 33 33 H 1.09000 * 109.47117 * 299.99489 * 7 5 4 34 34 H 1.09002 * 109.47152 * 269.68605 * 9 8 4 35 35 H 1.09001 * 109.46980 * 149.68706 * 9 8 4 36 36 H 1.09004 * 109.47113 * 29.68687 * 9 8 4 37 37 H 1.08997 * 109.46991 * 209.99910 * 11 10 8 38 38 H 1.08996 * 109.46546 * 329.99206 * 11 10 8 39 39 H 1.08993 * 113.47901 * 336.06328 * 13 12 11 40 40 H 1.09000 * 113.47436 * 106.53531 * 13 12 11 41 41 H 1.09004 * 114.17373 * 272.38253 * 14 13 12 42 42 H 0.97000 * 119.99846 * 180.02562 * 18 17 15 43 43 H 1.08996 * 113.47291 * 253.47267 * 23 12 11 44 44 H 1.09006 * 113.47280 * 23.92836 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0043 5 6 4.7899 1.5007 0.0105 6 6 4.7772 2.3890 -1.2351 7 6 4.7716 2.3787 1.2634 8 6 3.6142 -0.7154 -0.0013 9 6 4.8350 -1.5990 -0.0015 10 6 2.3272 -1.1331 -0.0009 11 6 1.8599 -2.5659 -0.0006 12 7 1.7086 -3.0314 1.3844 13 6 2.9317 -3.7114 1.8499 14 6 2.0287 -4.7563 2.5203 15 6 2.5218 -6.1749 2.3959 16 1 2.1692 -6.8005 1.5891 17 6 3.4232 -6.6743 3.3120 18 7 3.8530 -5.9124 4.2941 19 14 4.0350 -8.4324 3.1574 20 1 3.4045 -9.0738 1.9758 21 1 5.5107 -8.4303 2.9915 22 1 3.6757 -9.1911 4.3824 23 6 1.0304 -4.3401 1.4310 24 1 -0.3633 -0.0007 1.0277 25 1 -0.3633 0.8904 -0.5132 26 1 -0.3633 -0.8896 -0.5145 27 1 5.6908 0.8870 0.0100 28 1 3.8764 3.0027 -1.2346 29 1 5.6558 3.0341 -1.2302 30 1 4.7902 1.7635 -2.1276 31 1 4.7806 1.7458 2.1508 32 1 5.6502 3.0238 1.2678 33 1 3.8707 2.9923 1.2639 34 1 5.1291 -1.8123 -1.0292 35 1 4.6077 -2.5329 0.5126 36 1 5.6513 -1.0909 0.5120 37 1 0.9009 -2.6353 -0.5141 38 1 2.5931 -3.1871 -0.5148 39 1 3.5380 -4.1170 1.0401 40 1 3.5134 -3.1218 2.5584 41 1 1.7194 -4.4954 3.5324 42 1 4.4873 -6.2637 4.9384 43 1 0.0008 -4.2833 1.7843 44 1 1.1293 -4.9135 0.5092 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895342928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:08 Heat of formation + Delta-G solvation = 76.822050 kcal Electronic energy + Delta-G solvation = -22073.705835 eV Core-core repulsion = 19027.544593 eV Total energy + Delta-G solvation = -3046.161242 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.37198 -40.44135 -36.85049 -34.81337 -33.82001 -32.91209 -30.62202 -28.71321 -28.23997 -28.14943 -26.60382 -26.43152 -23.96982 -22.64045 -20.53794 -20.34154 -19.83118 -18.57936 -17.56241 -16.79426 -16.46370 -16.15588 -15.65612 -15.51858 -15.12396 -14.91389 -14.36201 -14.31620 -14.05423 -13.91844 -13.80499 -13.41162 -13.31937 -13.18091 -13.13397 -12.93973 -12.89449 -12.85731 -12.64113 -12.31572 -12.25356 -12.13204 -11.88921 -11.68137 -11.21186 -11.13703 -10.81706 -10.46535 -9.90480 -9.59191 -9.11552 -8.11808 -6.23076 0.93957 1.43343 1.45668 1.57095 1.60372 1.80399 2.45146 3.17606 3.44014 3.59882 3.73998 3.93745 3.94133 4.02762 4.08156 4.20847 4.32376 4.44045 4.55955 4.60289 4.62206 4.64051 4.65863 4.68089 4.76785 4.78447 4.79902 4.87089 4.94684 4.99831 5.03115 5.10309 5.11085 5.18175 5.22208 5.29344 5.36091 5.65255 5.67157 5.86152 5.89316 6.23635 6.34143 6.51330 6.86235 6.86970 7.45483 8.98065 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023113 B = 0.004273 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.137498 B = 6551.625136 C = 7250.727722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.073 3.927 3 N -0.323 5.323 4 N -0.368 5.368 5 C 0.144 3.856 6 C -0.149 4.149 7 C -0.154 4.154 8 C 0.084 3.916 9 C -0.097 4.097 10 C -0.240 4.240 11 C 0.105 3.895 12 N -0.478 5.478 13 C 0.029 3.971 14 C 0.019 3.981 15 C -0.526 4.526 16 H 0.061 0.939 17 C 0.015 3.985 18 N -0.923 5.923 19 Si 0.957 3.043 20 H -0.263 1.263 21 H -0.280 1.280 22 H -0.282 1.282 23 C 0.009 3.991 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.117 0.883 28 H 0.053 0.947 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.104 0.896 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.055 0.945 40 H 0.035 0.965 41 H 0.024 0.976 42 H 0.261 0.739 43 H 0.072 0.928 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.456 13.852 -11.715 18.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.093 4.093 3 N -0.146 5.146 4 N -0.151 5.151 5 C 0.044 3.956 6 C -0.207 4.207 7 C -0.212 4.212 8 C -0.044 4.044 9 C -0.155 4.155 10 C -0.251 4.251 11 C -0.024 4.024 12 N -0.200 5.200 13 C -0.101 4.101 14 C -0.001 4.001 15 C -0.565 4.565 16 H 0.079 0.921 17 C -0.184 4.184 18 N -0.562 5.562 19 Si 0.782 3.218 20 H -0.187 1.187 21 H -0.206 1.206 22 H -0.208 1.208 23 C -0.120 4.120 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.135 0.865 28 H 0.072 0.928 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.123 0.877 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.043 0.957 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.463 15.848 -11.245 19.587 hybrid contribution 0.686 -2.315 -0.023 2.415 sum 3.150 13.532 -11.268 17.889 Atomic orbital electron populations 1.20154 0.85466 1.03552 1.03063 1.22539 0.97913 0.90075 0.98765 1.77077 0.87173 1.23049 1.27283 1.48821 1.05385 1.03783 1.57140 1.21649 0.83944 0.92064 0.97991 1.22052 1.03814 0.99512 0.95332 1.22089 1.03868 0.99699 0.95564 1.21172 0.97444 0.85150 1.00654 1.20618 0.92622 0.98038 1.04193 1.19673 0.91756 0.95880 1.17789 1.20781 1.00345 0.90672 0.90620 1.68865 1.10655 1.21282 1.19190 1.23733 0.93249 0.95049 0.98026 1.20053 0.93000 0.93646 0.93357 1.21411 1.25317 0.97933 1.11800 0.92104 1.25814 0.96515 1.01449 0.94589 1.70118 1.32530 1.37918 1.15664 0.85530 0.78016 0.80049 0.78211 1.18684 1.20579 1.20830 1.23828 0.99010 0.89812 0.99317 0.90827 0.90261 0.89751 0.86475 0.92761 0.87928 0.92660 0.93751 0.87739 0.92743 0.88472 0.90882 0.89724 0.89911 0.93886 0.92714 0.94655 0.95730 0.92968 0.90981 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.65 10.26 71.23 0.73 -0.92 16 2 C 0.07 2.37 7.22 43.10 0.31 2.68 16 3 N -0.32 -10.58 12.43 -47.38 -0.59 -11.17 16 4 N -0.37 -10.68 3.28 -314.29 -1.03 -11.71 16 5 C 0.14 2.93 3.64 44.99 0.16 3.10 16 6 C -0.15 -2.48 9.45 71.98 0.68 -1.80 16 7 C -0.15 -2.99 9.46 71.98 0.68 -2.31 16 8 C 0.08 2.61 6.93 41.40 0.29 2.90 16 9 C -0.10 -2.51 9.56 71.24 0.68 -1.83 16 10 C -0.24 -8.08 5.68 -20.14 -0.11 -8.20 16 11 C 0.10 3.58 4.73 85.56 0.40 3.99 16 12 N -0.48 -19.48 6.32 -932.56 -5.89 -25.37 16 13 C 0.03 1.32 5.90 83.57 0.49 1.82 16 14 C 0.02 0.95 3.76 -11.20 -0.04 0.91 16 15 C -0.53 -28.56 8.83 25.60 0.23 -28.34 16 16 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 17 C 0.02 0.85 5.46 84.65 0.46 1.31 16 18 N -0.92 -54.10 13.26 21.45 0.28 -53.81 16 19 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 20 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 C 0.01 0.38 7.25 83.57 0.61 0.98 16 24 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.08 1.96 7.26 -2.39 -0.02 1.94 16 27 H 0.12 1.92 6.66 -2.39 -0.02 1.90 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.07 2.27 5.19 -2.39 -0.01 2.26 16 36 H 0.08 1.84 7.08 -2.38 -0.02 1.83 16 37 H 0.08 2.54 7.19 -2.39 -0.02 2.53 16 38 H 0.04 1.46 6.93 -2.39 -0.02 1.44 16 39 H 0.05 2.47 6.44 -2.39 -0.02 2.45 16 40 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.02 1.43 8.11 -2.38 -0.02 1.41 16 42 H 0.26 14.48 8.31 -92.71 -0.77 13.70 16 43 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 44 H 0.06 2.51 7.87 -2.38 -0.02 2.49 16 Total: -1.00 -66.30 352.69 1.34 -64.96 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.96 Total: 18.06 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 5.57 Total: -25.71 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -7.22 Total: -102.07 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -66.30 1.34 -64.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895342928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.783 kcal (2) G-P(sol) polarization free energy of solvation -66.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds