Wall clock time and date at job start Mon Mar 30 2020 01:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46863 * 2 1 4 4 C 1.52999 * 109.46921 * 119.99679 * 2 1 3 5 5 C 1.50702 * 109.47522 * 295.00468 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52999 * 109.47239 * 239.99874 * 2 1 3 14 14 N 1.46895 * 109.47259 * 65.00243 * 13 2 1 15 15 C 1.46902 * 111.00052 * 180.02562 * 14 13 2 16 16 C 1.50699 * 109.47194 * 179.97438 * 15 14 13 17 17 C 1.38237 * 119.99938 * 269.72489 * 16 15 14 18 18 C 1.38237 * 119.99541 * 179.73992 * 17 16 15 19 19 C 1.38234 * 120.00301 * 0.53651 * 18 17 16 20 20 C 1.50702 * 119.99825 * 179.76818 * 19 18 17 21 21 C 1.52997 * 109.46823 * 269.97314 * 20 19 18 22 22 O 1.42898 * 109.47211 * 180.02562 * 21 20 19 23 23 C 1.38230 * 119.99882 * 359.73847 * 19 18 17 24 24 C 1.38234 * 120.00015 * 89.99457 * 16 15 14 25 25 H 1.09007 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47667 * 300.00120 * 1 2 3 27 27 H 1.09008 * 109.47037 * 60.00507 * 1 2 3 28 28 H 1.09000 * 109.47527 * 175.00066 * 4 2 1 29 29 H 1.09001 * 109.47054 * 55.00157 * 4 2 1 30 30 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 31 31 H 1.09004 * 109.46992 * 185.00306 * 13 2 1 32 32 H 1.08999 * 109.47129 * 304.99562 * 13 2 1 33 33 H 1.00901 * 110.99900 * 303.95543 * 14 13 2 34 34 H 1.08999 * 109.46615 * 299.99647 * 15 14 13 35 35 H 1.08994 * 109.47343 * 59.99891 * 15 14 13 36 36 H 1.07998 * 120.00155 * 0.02562 * 17 16 15 37 37 H 1.08008 * 119.99379 * 180.29587 * 18 17 16 38 38 H 1.09001 * 109.47288 * 29.97260 * 20 19 18 39 39 H 1.08996 * 109.47044 * 149.97475 * 20 19 18 40 40 H 1.09001 * 109.47145 * 300.00034 * 21 20 19 41 41 H 1.09002 * 109.47343 * 59.99820 * 21 20 19 42 42 H 0.96700 * 114.00102 * 179.97438 * 22 21 20 43 43 H 1.08000 * 120.00103 * 180.02562 * 23 19 18 44 44 H 1.07999 * 120.00305 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4767 6 1 1.0804 0.9746 2.3756 7 6 1.9930 -0.4017 3.7283 8 7 1.6498 0.2804 4.7991 9 14 2.9635 -1.9882 3.9029 10 1 2.0242 -3.1318 4.0269 11 1 3.8201 -2.1789 2.7051 12 1 3.8174 -1.9153 5.1156 13 6 2.0400 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1249 -0.6273 -3.6672 16 6 1.7079 0.1779 -4.8709 17 6 0.4962 -0.0757 -5.4861 18 6 0.1114 0.6665 -6.5870 19 6 0.9432 1.6547 -7.0794 20 6 0.5259 2.4602 -8.2828 21 6 1.0189 1.7686 -9.5553 22 8 0.6238 2.5326 -10.6964 23 6 2.1573 1.9044 -6.4677 24 6 2.5396 1.1662 -5.3632 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 3.1262 -0.7995 1.2057 29 1 1.6053 -1.7197 1.2952 30 1 1.9007 -0.0402 5.6795 31 1 3.1263 -0.7995 -1.2055 32 1 1.6054 -1.7198 -1.2951 33 1 0.6529 0.1793 -2.4753 34 1 3.2117 -0.7051 -3.6404 35 1 1.6905 -1.6250 -3.7296 36 1 -0.1518 -0.8505 -5.1038 37 1 -0.8374 0.4715 -7.0647 38 1 -0.5611 2.5376 -8.3091 39 1 0.9597 3.4581 -8.2203 40 1 2.1058 1.6912 -9.5290 41 1 0.5851 0.7706 -9.6179 42 1 0.9037 2.1526 -11.5404 43 1 2.8070 2.6768 -6.8522 44 1 3.4884 1.3611 -4.8855 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898170435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:20 Heat of formation + Delta-G solvation = -52.384725 kcal Electronic energy + Delta-G solvation = -20331.019504 eV Core-core repulsion = 17246.962685 eV Total energy + Delta-G solvation = -3084.056819 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.78581 -37.51758 -36.92708 -34.66232 -32.99094 -31.83052 -31.08760 -29.31725 -27.45107 -26.00041 -24.42657 -22.90669 -22.75269 -21.77173 -20.71052 -19.02841 -17.94248 -16.92670 -16.29671 -16.07898 -15.40923 -15.17725 -14.83655 -14.75675 -14.57895 -13.98490 -13.81281 -13.57924 -13.22485 -12.90890 -12.52482 -12.46284 -12.27535 -12.05660 -11.84461 -11.63846 -11.59623 -11.16812 -11.10605 -11.00418 -10.72192 -10.41525 -10.39302 -9.80951 -9.72183 -9.46784 -9.06684 -9.05177 -8.77646 -8.50606 -8.20912 -6.00696 -3.97597 1.10983 1.26276 3.31832 3.39460 3.43071 3.47414 3.86502 4.47752 4.48887 4.52850 4.68598 4.76909 4.84651 4.87856 4.88747 5.10827 5.15458 5.32093 5.32698 5.43223 5.51758 5.61025 5.63041 5.67393 5.70610 5.89834 5.93154 5.95954 6.13967 6.24772 6.37178 6.40893 6.45985 6.52011 6.76210 6.84140 6.97068 7.07015 7.17071 7.21896 7.33059 7.48190 7.58818 7.84001 8.58830 9.05101 9.62101 11.12719 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.049523 B = 0.002375 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.260768 B =11785.743374 C =11914.833592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 H 0.072 0.928 4 C -0.008 4.008 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.279 1.279 11 H -0.266 1.266 12 H -0.289 1.289 13 C 0.061 3.939 14 N -0.684 5.684 15 C 0.094 3.906 16 C -0.076 4.076 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.090 4.090 20 C -0.079 4.079 21 C 0.081 3.919 22 O -0.577 6.577 23 C -0.115 4.115 24 C -0.095 4.095 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.034 0.966 28 H 0.015 0.985 29 H 0.009 0.991 30 H 0.262 0.738 31 H 0.067 0.933 32 H 0.024 0.976 33 H 0.341 0.659 34 H 0.079 0.921 35 H 0.035 0.965 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.380 0.620 43 H 0.121 0.879 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.513 -0.648 -28.855 28.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.094 4.094 3 H 0.090 0.910 4 C -0.046 4.046 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.137 4.137 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.191 1.191 12 H -0.215 1.215 13 C -0.067 4.067 14 N -0.316 5.316 15 C -0.035 4.035 16 C -0.077 4.077 17 C -0.132 4.132 18 C -0.133 4.133 19 C -0.090 4.090 20 C -0.116 4.116 21 C 0.003 3.997 22 O -0.383 6.383 23 C -0.133 4.133 24 C -0.113 4.113 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.053 0.947 28 H 0.033 0.967 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.160 0.840 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.227 0.773 43 H 0.139 0.861 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.212 0.144 -28.142 28.143 hybrid contribution 0.136 -2.016 -0.116 2.024 sum -0.076 -1.872 -28.257 28.319 Atomic orbital electron populations 1.21757 0.96246 1.00484 1.00865 1.21030 0.95226 1.00237 0.92944 0.90981 1.19605 0.95937 0.95673 0.93416 1.21135 1.35297 1.09534 0.89079 0.90812 1.25038 0.95687 0.96980 0.95974 1.69917 1.47242 1.39252 0.98018 0.86796 0.80631 0.84298 0.77636 1.20462 1.19085 1.21480 1.22194 1.00360 0.94469 0.89702 1.60605 1.19996 1.50196 1.00767 1.20905 1.00859 0.93988 0.87705 1.19885 0.94563 0.96976 0.96228 1.21059 0.96108 0.99911 0.96074 1.20981 0.99466 0.95929 0.96927 1.19635 0.95080 0.97285 0.97033 1.20440 1.02186 0.98761 0.90238 1.22162 0.98253 0.93831 0.85423 1.86459 1.81635 1.53393 1.16769 1.21045 0.96047 0.99922 0.96326 1.21054 0.99916 0.94819 0.95544 0.94093 0.91298 0.94707 0.96670 0.97258 0.92845 0.91416 0.95789 0.84020 0.90298 0.94698 0.86221 0.86199 0.90324 0.90271 0.93447 0.93488 0.77276 0.86107 0.85710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.77 37.16 0.33 -2.19 16 2 C -0.08 -1.49 2.55 -90.62 -0.23 -1.72 16 3 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 4 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 5 C -0.51 -14.53 8.96 -34.44 -0.31 -14.84 16 6 H 0.07 2.25 7.30 -52.49 -0.38 1.86 16 7 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16 9 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 C 0.06 1.00 5.14 -3.83 -0.02 0.98 16 14 N -0.68 -9.73 6.49 -115.06 -0.75 -10.48 16 15 C 0.09 1.12 5.81 -4.98 -0.03 1.09 16 16 C -0.08 -0.85 5.39 -104.62 -0.56 -1.41 16 17 C -0.11 -1.15 9.70 -39.58 -0.38 -1.53 16 18 C -0.12 -1.08 9.70 -39.58 -0.38 -1.46 16 19 C -0.09 -0.83 5.13 -104.63 -0.54 -1.37 16 20 C -0.08 -0.63 5.71 -27.88 -0.16 -0.79 16 21 C 0.08 0.57 7.03 37.16 0.26 0.83 16 22 O -0.58 -4.28 13.66 -35.23 -0.48 -4.77 16 23 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 24 C -0.09 -1.01 9.70 -39.58 -0.38 -1.40 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 1.43 6.95 -51.93 -0.36 1.07 16 27 H 0.03 0.55 6.68 -51.92 -0.35 0.20 16 28 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 29 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.34 4.73 6.97 -39.29 -0.27 4.46 16 34 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 35 H 0.03 0.39 8.08 -51.93 -0.42 -0.03 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 39 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 40 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.38 1.08 9.12 45.56 0.42 1.50 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 44 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 358.14 15.07 5.40 5.40 Total: -1.00 -32.06 358.14 -9.51 -41.57 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.79 Total: 2.20 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -2.99 Total: -23.85 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.03 Total: -37.77 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.48 Total: -4.77 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.06 -9.51 -41.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898170435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.816 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds