Wall clock time and date at job start Mon Mar 30 2020 01:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46863 * 2 1 4 4 C 1.52999 * 109.46921 * 119.99679 * 2 1 3 5 5 C 1.50702 * 109.47522 * 295.00468 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52999 * 109.47239 * 239.99874 * 2 1 3 14 14 N 1.46895 * 109.47259 * 65.00243 * 13 2 1 15 15 C 1.46902 * 111.00052 * 180.02562 * 14 13 2 16 16 C 1.50699 * 109.47194 * 179.97438 * 15 14 13 17 17 C 1.38237 * 119.99938 * 269.72489 * 16 15 14 18 18 C 1.38237 * 119.99541 * 179.73992 * 17 16 15 19 19 C 1.38234 * 120.00301 * 0.53651 * 18 17 16 20 20 C 1.50702 * 119.99825 * 179.76818 * 19 18 17 21 21 C 1.52997 * 109.46823 * 269.97314 * 20 19 18 22 22 O 1.42898 * 109.47211 * 180.02562 * 21 20 19 23 23 C 1.38230 * 119.99882 * 359.73847 * 19 18 17 24 24 C 1.38234 * 120.00015 * 89.99457 * 16 15 14 25 25 H 1.09007 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47667 * 300.00120 * 1 2 3 27 27 H 1.09008 * 109.47037 * 60.00507 * 1 2 3 28 28 H 1.09000 * 109.47527 * 175.00066 * 4 2 1 29 29 H 1.09001 * 109.47054 * 55.00157 * 4 2 1 30 30 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 31 31 H 1.09004 * 109.46992 * 185.00306 * 13 2 1 32 32 H 1.08999 * 109.47129 * 304.99562 * 13 2 1 33 33 H 1.00901 * 110.99900 * 303.95543 * 14 13 2 34 34 H 1.08999 * 109.46615 * 299.99647 * 15 14 13 35 35 H 1.08994 * 109.47343 * 59.99891 * 15 14 13 36 36 H 1.07998 * 120.00155 * 0.02562 * 17 16 15 37 37 H 1.08008 * 119.99379 * 180.29587 * 18 17 16 38 38 H 1.09001 * 109.47288 * 29.97260 * 20 19 18 39 39 H 1.08996 * 109.47044 * 149.97475 * 20 19 18 40 40 H 1.09001 * 109.47145 * 300.00034 * 21 20 19 41 41 H 1.09002 * 109.47343 * 59.99820 * 21 20 19 42 42 H 0.96700 * 114.00102 * 179.97438 * 22 21 20 43 43 H 1.08000 * 120.00103 * 180.02562 * 23 19 18 44 44 H 1.07999 * 120.00305 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4767 6 1 1.0804 0.9746 2.3756 7 6 1.9930 -0.4017 3.7283 8 7 1.6498 0.2804 4.7991 9 14 2.9635 -1.9882 3.9029 10 1 2.0242 -3.1318 4.0269 11 1 3.8201 -2.1789 2.7051 12 1 3.8174 -1.9153 5.1156 13 6 2.0400 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1249 -0.6273 -3.6672 16 6 1.7079 0.1779 -4.8709 17 6 0.4962 -0.0757 -5.4861 18 6 0.1114 0.6665 -6.5870 19 6 0.9432 1.6547 -7.0794 20 6 0.5259 2.4602 -8.2828 21 6 1.0189 1.7686 -9.5553 22 8 0.6238 2.5326 -10.6964 23 6 2.1573 1.9044 -6.4677 24 6 2.5396 1.1662 -5.3632 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 3.1262 -0.7995 1.2057 29 1 1.6053 -1.7197 1.2952 30 1 1.9007 -0.0402 5.6795 31 1 3.1263 -0.7995 -1.2055 32 1 1.6054 -1.7198 -1.2951 33 1 0.6529 0.1793 -2.4753 34 1 3.2117 -0.7051 -3.6404 35 1 1.6905 -1.6250 -3.7296 36 1 -0.1518 -0.8505 -5.1038 37 1 -0.8374 0.4715 -7.0647 38 1 -0.5611 2.5376 -8.3091 39 1 0.9597 3.4581 -8.2203 40 1 2.1058 1.6912 -9.5290 41 1 0.5851 0.7706 -9.6179 42 1 0.9037 2.1526 -11.5404 43 1 2.8070 2.6768 -6.8522 44 1 3.4884 1.3611 -4.8855 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898170435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:19 Heat of formation + Delta-G solvation = -73.931084 kcal Electronic energy + Delta-G solvation = -20331.953824 eV Core-core repulsion = 17246.962685 eV Total energy + Delta-G solvation = -3084.991139 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.52683 -38.51693 -37.81410 -35.93097 -34.47600 -33.33672 -31.81362 -30.34585 -29.14420 -27.17130 -25.62894 -23.82091 -23.63271 -23.15373 -21.46043 -20.64106 -18.96577 -18.47401 -17.35390 -16.79957 -16.53309 -16.22228 -15.90573 -15.70039 -15.53970 -15.18220 -15.09689 -14.80797 -14.39236 -14.21590 -13.88760 -13.52945 -13.29628 -13.25411 -13.14632 -12.82124 -12.70404 -12.49131 -12.20176 -12.08884 -11.97917 -11.82101 -11.70679 -11.46768 -11.18007 -11.04591 -10.89775 -10.73366 -9.80524 -9.58082 -9.26844 -8.25538 -6.28008 0.35664 0.52421 1.35977 1.38276 1.50061 2.38178 2.73025 3.09484 3.32678 3.47482 3.85849 3.91687 4.09191 4.13730 4.19289 4.21545 4.23165 4.35141 4.40599 4.44248 4.56225 4.59329 4.69561 4.74846 4.78527 4.84195 4.95688 5.00007 5.02503 5.05141 5.18328 5.21275 5.29103 5.37736 5.50101 5.54952 5.69473 5.70044 5.73429 5.74078 6.06763 6.14539 6.35159 6.47690 6.79666 6.87571 7.35356 8.91219 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.049523 B = 0.002375 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.260768 B =11785.743374 C =11914.833592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 H 0.050 0.950 4 C -0.006 4.006 5 C -0.519 4.519 6 H 0.033 0.967 7 C -0.002 4.002 8 N -0.954 5.954 9 Si 0.950 3.050 10 H -0.267 1.267 11 H -0.246 1.246 12 H -0.287 1.287 13 C 0.075 3.925 14 N -0.690 5.690 15 C 0.098 3.902 16 C -0.090 4.090 17 C -0.119 4.119 18 C -0.120 4.120 19 C -0.089 4.089 20 C -0.078 4.078 21 C 0.083 3.917 22 O -0.596 6.596 23 C -0.122 4.122 24 C -0.108 4.108 25 H 0.051 0.949 26 H 0.034 0.966 27 H 0.062 0.938 28 H 0.017 0.983 29 H 0.018 0.982 30 H 0.264 0.736 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.343 0.657 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.399 0.601 43 H 0.134 0.866 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.109 -2.328 -31.166 31.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.044 4.044 5 C -0.557 4.557 6 H 0.051 0.949 7 C -0.198 4.198 8 N -0.596 5.596 9 Si 0.774 3.226 10 H -0.193 1.193 11 H -0.170 1.170 12 H -0.213 1.213 13 C -0.054 4.054 14 N -0.323 5.323 15 C -0.030 4.030 16 C -0.091 4.091 17 C -0.137 4.137 18 C -0.138 4.138 19 C -0.090 4.090 20 C -0.116 4.116 21 C 0.006 3.994 22 O -0.405 6.405 23 C -0.140 4.140 24 C -0.126 4.126 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.162 0.838 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.249 0.751 43 H 0.152 0.848 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.194 -1.538 -30.497 30.537 hybrid contribution -0.053 -1.370 0.532 1.470 sum 0.141 -2.908 -29.965 30.106 Atomic orbital electron populations 1.21666 0.95408 1.01036 1.00570 1.20892 0.95948 0.99000 0.93241 0.93108 1.19560 0.96032 0.95664 0.93140 1.21460 1.34332 1.08614 0.91285 0.94852 1.26038 0.97065 1.01120 0.95532 1.70080 1.49129 1.41615 0.98728 0.85660 0.79311 0.79393 0.78276 1.19252 1.16966 1.21251 1.21915 1.00243 0.94478 0.88789 1.60530 1.20242 1.50463 1.01017 1.20895 1.00945 0.94387 0.86772 1.19884 0.95285 0.97511 0.96399 1.21238 0.95927 1.00286 0.96253 1.21229 1.00164 0.95661 0.96735 1.19810 0.94836 0.97122 0.97193 1.20433 1.02155 0.98558 0.90408 1.22118 0.98560 0.93828 0.84913 1.86406 1.81978 1.54140 1.17928 1.21245 0.96535 1.00124 0.96099 1.21189 1.00159 0.95157 0.96114 0.93035 0.94728 0.91868 0.96484 0.96368 0.92707 0.91386 0.94649 0.83778 0.90169 0.93650 0.85119 0.84499 0.90352 0.90526 0.92909 0.92777 0.75110 0.84780 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 8.77 71.98 0.63 -4.07 16 2 C -0.07 -2.79 2.55 -10.80 -0.03 -2.82 16 3 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 4 C -0.01 -0.28 3.52 29.85 0.10 -0.18 16 5 C -0.52 -30.12 8.96 25.60 0.23 -29.89 16 6 H 0.03 2.14 7.30 -2.91 -0.02 2.12 16 7 C 0.00 -0.10 5.47 84.65 0.46 0.37 16 8 N -0.95 -60.81 13.96 21.45 0.30 -60.51 16 9 Si 0.95 44.76 27.47 68.60 1.88 46.65 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 11 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 12 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 13 C 0.07 2.27 5.14 86.30 0.44 2.72 16 14 N -0.69 -18.31 6.49 -517.95 -3.36 -21.67 16 15 C 0.10 2.12 5.81 85.56 0.50 2.62 16 16 C -0.09 -1.86 5.39 -19.87 -0.11 -1.97 16 17 C -0.12 -2.17 9.70 22.27 0.22 -1.96 16 18 C -0.12 -2.00 9.70 22.27 0.22 -1.79 16 19 C -0.09 -1.50 5.13 -19.87 -0.10 -1.60 16 20 C -0.08 -1.12 5.71 29.85 0.17 -0.95 16 21 C 0.08 1.00 7.03 71.98 0.51 1.51 16 22 O -0.60 -7.79 13.66 -148.98 -2.03 -9.82 16 23 C -0.12 -2.17 9.70 22.27 0.22 -1.96 16 24 C -0.11 -2.17 9.70 22.27 0.22 -1.95 16 25 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.03 1.46 6.95 -2.39 -0.02 1.45 16 27 H 0.06 1.91 6.68 -2.38 -0.02 1.89 16 28 H 0.02 0.78 7.20 -2.39 -0.02 0.77 16 29 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 30 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 31 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.34 8.77 6.97 -89.69 -0.63 8.15 16 34 H 0.08 1.70 8.09 -2.39 -0.02 1.68 16 35 H 0.05 0.89 8.08 -2.39 -0.02 0.87 16 36 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 39 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 40 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.40 1.53 9.12 -74.06 -0.68 0.85 16 43 H 0.13 1.93 8.06 -2.91 -0.02 1.90 16 44 H 0.13 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -69.60 358.14 0.08 -69.52 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -0.38 Total: 17.74 kcal Atomic # 6 Polarization: -45.59 SS G_CDS: 3.67 Total: -41.91 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -3.06 Total: -82.17 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -2.03 Total: -9.82 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.65 kcal Total: -69.60 0.08 -69.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898170435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.411 kcal (2) G-P(sol) polarization free energy of solvation -69.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds