Wall clock time and date at job start Mon Mar 30 2020 02:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99399 * 2 1 4 4 H 1.48500 * 109.46923 * 270.00062 * 3 2 1 5 5 H 1.48491 * 109.47241 * 29.99974 * 3 2 1 6 6 H 1.48502 * 109.47086 * 150.00037 * 3 2 1 7 7 C 1.37869 * 120.00521 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00220 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00191 * 179.97438 * 7 2 1 10 10 C 1.50701 * 109.47439 * 179.97438 * 9 7 2 11 11 C 1.35353 * 126.74751 * 125.24530 * 10 9 7 12 12 N 1.35316 * 106.17126 * 180.13165 * 11 10 9 13 13 C 1.46500 * 125.86704 * 179.91058 * 12 11 10 14 14 C 1.52997 * 109.47473 * 124.71306 * 13 12 11 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.53008 * 109.46847 * 294.99397 * 16 15 14 18 18 C 1.53001 * 109.46847 * 180.02562 * 17 16 15 19 19 C 1.53000 * 109.47194 * 60.00680 * 18 17 16 20 20 C 1.53004 * 109.46826 * 299.99750 * 19 18 17 21 21 C 1.52997 * 109.47236 * 59.99843 * 20 19 18 22 22 N 1.28717 * 108.26424 * 359.64287 * 12 11 10 23 23 N 1.28636 * 110.17491 * 0.22688 * 22 12 11 24 24 H 0.96995 * 120.00300 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46763 * 60.00366 * 9 7 2 26 26 H 1.09003 * 109.47365 * 300.00685 * 9 7 2 27 27 H 1.07999 * 126.91668 * 0.02713 * 11 10 9 28 28 H 1.09002 * 109.47129 * 4.71049 * 13 12 11 29 29 H 1.08998 * 109.46845 * 244.71855 * 13 12 11 30 30 H 1.09002 * 109.47153 * 59.99757 * 14 13 12 31 31 H 1.09001 * 109.46832 * 299.99948 * 14 13 12 32 32 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 33 33 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 34 34 H 1.08994 * 109.47704 * 54.99481 * 16 15 14 35 35 H 1.08994 * 109.47037 * 300.00493 * 17 16 15 36 36 H 1.09003 * 109.46480 * 60.00398 * 17 16 15 37 37 H 1.08994 * 109.47239 * 299.99825 * 18 17 16 38 38 H 1.09006 * 109.46733 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.47237 * 179.97438 * 19 18 17 40 40 H 1.09004 * 109.47242 * 59.99175 * 19 18 17 41 41 H 1.09004 * 109.46741 * 299.99732 * 20 19 18 42 42 H 1.09001 * 109.46917 * 180.02562 * 20 19 18 43 43 H 1.09002 * 109.47196 * 180.02562 * 21 20 19 44 44 H 1.09004 * 109.47346 * 60.00260 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1938 0.0000 10 6 4.0141 -2.6146 0.0013 11 6 4.8738 -3.1704 -0.8841 12 7 5.0354 -4.4566 -0.4961 13 6 5.8805 -5.4533 -1.1584 14 6 6.8673 -6.0387 -0.1463 15 6 7.7503 -7.0792 -0.8383 16 6 8.7367 -7.6651 0.1740 17 6 9.6954 -6.5695 0.6447 18 6 10.6822 -7.1555 1.6565 19 6 11.4800 -8.2822 0.9969 20 6 10.5213 -9.3778 0.5261 21 6 9.5345 -8.7918 -0.4856 22 7 4.3233 -4.6523 0.5582 23 7 3.7020 -3.5731 0.8806 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6794 0.8895 26 1 3.8746 -0.6805 -0.8905 27 1 5.3364 -2.6854 -1.7310 28 1 6.4314 -4.9801 -1.9712 29 1 5.2552 -6.2509 -1.5594 30 1 6.3164 -6.5119 0.6665 31 1 7.4926 -5.2410 0.2547 32 1 7.1253 -7.8770 -1.2396 33 1 8.3012 -6.6056 -1.6508 34 1 8.1883 -8.0600 1.0291 35 1 10.2438 -6.1745 -0.2104 36 1 9.1270 -5.7665 1.1142 37 1 10.1341 -7.5507 2.5116 38 1 11.3655 -6.3750 1.9915 39 1 12.1833 -8.6995 1.7176 40 1 12.0281 -7.8869 0.1417 41 1 9.9732 -9.7731 1.3814 42 1 11.0897 -10.1808 0.0567 43 1 8.8512 -9.5722 -0.8206 44 1 10.0826 -8.3965 -1.3408 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900629150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:17 Heat of formation + Delta-G solvation = 53.347056 kcal Electronic energy + Delta-G solvation = -20786.256775 eV Core-core repulsion = 17739.077581 eV Total energy + Delta-G solvation = -3047.179194 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.54486 -39.24667 -35.95967 -33.75650 -32.88849 -31.25601 -31.12234 -30.19513 -27.96415 -26.26428 -23.55789 -23.06442 -22.60890 -21.15959 -20.97846 -20.08630 -19.78536 -16.83701 -16.67495 -16.10450 -15.68184 -15.33576 -14.59194 -14.39771 -14.31221 -14.28164 -13.96717 -13.38285 -13.20864 -12.97279 -12.58086 -12.35635 -12.21513 -11.99217 -11.88001 -11.74525 -11.45862 -11.33588 -11.11201 -10.97918 -10.76948 -10.61842 -10.52787 -10.35920 -10.24174 -10.07990 -9.81844 -9.35628 -9.29361 -8.51711 -8.22706 -5.97576 -3.95433 2.20615 2.79043 3.32927 3.41128 3.42533 3.45189 4.21163 4.32003 4.38471 4.48274 4.49112 4.67592 4.76094 4.80141 4.97088 5.06404 5.11849 5.15327 5.17378 5.18371 5.21037 5.31767 5.35087 5.36776 5.51084 5.60502 5.64867 5.69568 5.78156 5.79065 5.84623 5.89419 5.92095 5.96594 5.99025 6.08089 6.17223 6.28369 6.89421 7.12532 7.16114 7.24480 7.75683 8.60358 9.10626 9.28468 9.61532 11.15985 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.041194 B = 0.002625 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.541377 B =10665.723668 C =10968.127212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.505 4.505 8 H 0.076 0.924 9 C 0.059 3.941 10 C 0.037 3.963 11 C -0.082 4.082 12 N -0.302 5.302 13 C 0.121 3.879 14 C -0.133 4.133 15 C -0.111 4.111 16 C -0.086 4.086 17 C -0.117 4.117 18 C -0.121 4.121 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.114 4.114 22 N -0.105 5.105 23 N -0.257 5.257 24 H 0.263 0.737 25 H 0.037 0.963 26 H 0.030 0.970 27 H 0.181 0.819 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.655 -16.811 -3.488 30.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.544 4.544 8 H 0.094 0.906 9 C 0.021 3.979 10 C -0.100 4.100 11 C -0.231 4.231 12 N -0.098 5.098 13 C -0.001 4.001 14 C -0.171 4.171 15 C -0.149 4.149 16 C -0.105 4.105 17 C -0.155 4.155 18 C -0.159 4.159 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.151 4.151 22 N -0.083 5.083 23 N -0.124 5.124 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.198 0.802 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 24.067 -17.730 -2.430 29.992 hybrid contribution 0.712 1.589 -1.032 2.024 sum 24.779 -16.141 -3.462 29.775 Atomic orbital electron populations 1.69903 1.06229 1.26783 1.51106 1.24983 0.94773 0.98879 0.94786 0.86823 0.80483 0.83845 0.78442 1.20256 1.21247 1.18893 1.20922 0.88194 0.94835 1.50438 0.90604 1.18142 0.97729 0.84640 0.97439 1.22480 0.95948 0.99118 0.92472 1.23334 1.08132 0.85711 1.05906 1.47217 1.32313 1.09586 1.20665 1.21964 0.92103 0.90688 0.95377 1.21938 0.97130 0.99412 0.98667 1.21566 0.97150 0.98046 0.98182 1.21153 0.95626 0.95499 0.98196 1.21655 0.97071 0.97784 0.98973 1.21541 0.98065 0.97879 0.98379 1.21540 0.97735 0.96210 1.00242 1.21535 0.97444 0.97673 0.99133 1.21582 0.97809 0.97614 0.98140 1.78185 1.06996 1.21587 1.01580 1.75093 1.17587 0.96014 1.23689 0.92709 0.94495 0.95178 0.80178 0.88358 0.89023 0.90016 0.90893 0.91415 0.91625 0.90948 0.92040 0.91648 0.91990 0.92137 0.92286 0.92140 0.92017 0.92203 0.91997 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.36 13.96 55.43 0.77 -27.59 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.51 27.47 -169.99 -4.67 16.85 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.17 6.54 56.52 0.37 -5.81 16 7 C -0.51 -14.97 9.64 -34.44 -0.33 -15.30 16 8 H 0.08 2.51 7.98 -52.49 -0.42 2.09 16 9 C 0.06 1.47 4.62 -29.03 -0.13 1.34 16 10 C 0.04 0.85 6.44 -82.78 -0.53 0.32 16 11 C -0.08 -1.46 11.49 -17.04 -0.20 -1.65 16 12 N -0.30 -4.96 3.44 -61.26 -0.21 -5.17 16 13 C 0.12 1.25 6.46 -4.04 -0.03 1.22 16 14 C -0.13 -1.22 5.09 -26.73 -0.14 -1.36 16 15 C -0.11 -0.74 4.68 -26.73 -0.13 -0.87 16 16 C -0.09 -0.59 2.19 -90.62 -0.20 -0.79 16 17 C -0.12 -0.84 4.96 -26.73 -0.13 -0.98 16 18 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 19 C -0.12 -0.74 5.92 -26.73 -0.16 -0.89 16 20 C -0.12 -0.73 5.92 -26.73 -0.16 -0.88 16 21 C -0.11 -0.70 5.20 -26.73 -0.14 -0.84 16 22 N -0.10 -2.14 12.91 60.35 0.78 -1.36 16 23 N -0.26 -6.21 12.40 33.29 0.41 -5.80 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.04 0.92 7.20 -51.93 -0.37 0.55 16 26 H 0.03 0.68 7.55 -51.93 -0.39 0.29 16 27 H 0.18 2.44 8.06 -52.49 -0.42 2.02 16 28 H 0.10 0.75 8.07 -51.93 -0.42 0.33 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 31 H 0.07 0.72 6.57 -51.93 -0.34 0.38 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 349.21 15.07 5.26 5.26 Total: -1.00 -34.39 349.21 -7.97 -42.36 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -7.79 Total: -4.75 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -2.53 Total: -19.80 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 1.75 Total: -39.92 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.39 -7.97 -42.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900629150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.708 kcal (2) G-P(sol) polarization free energy of solvation -34.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds