Wall clock time and date at job start Mon Mar 30 2020 02:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99399 * 2 1 4 4 H 1.48500 * 109.46923 * 270.00062 * 3 2 1 5 5 H 1.48491 * 109.47241 * 29.99974 * 3 2 1 6 6 H 1.48502 * 109.47086 * 150.00037 * 3 2 1 7 7 C 1.37869 * 120.00521 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00220 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00191 * 179.97438 * 7 2 1 10 10 C 1.50701 * 109.47439 * 179.97438 * 9 7 2 11 11 C 1.35353 * 126.74751 * 125.24530 * 10 9 7 12 12 N 1.35316 * 106.17126 * 180.13165 * 11 10 9 13 13 C 1.46500 * 125.86704 * 179.91058 * 12 11 10 14 14 C 1.52997 * 109.47473 * 124.71306 * 13 12 11 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.53008 * 109.46847 * 294.99397 * 16 15 14 18 18 C 1.53001 * 109.46847 * 180.02562 * 17 16 15 19 19 C 1.53000 * 109.47194 * 60.00680 * 18 17 16 20 20 C 1.53004 * 109.46826 * 299.99750 * 19 18 17 21 21 C 1.52997 * 109.47236 * 59.99843 * 20 19 18 22 22 N 1.28717 * 108.26424 * 359.64287 * 12 11 10 23 23 N 1.28636 * 110.17491 * 0.22688 * 22 12 11 24 24 H 0.96995 * 120.00300 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46763 * 60.00366 * 9 7 2 26 26 H 1.09003 * 109.47365 * 300.00685 * 9 7 2 27 27 H 1.07999 * 126.91668 * 0.02713 * 11 10 9 28 28 H 1.09002 * 109.47129 * 4.71049 * 13 12 11 29 29 H 1.08998 * 109.46845 * 244.71855 * 13 12 11 30 30 H 1.09002 * 109.47153 * 59.99757 * 14 13 12 31 31 H 1.09001 * 109.46832 * 299.99948 * 14 13 12 32 32 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 33 33 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 34 34 H 1.08994 * 109.47704 * 54.99481 * 16 15 14 35 35 H 1.08994 * 109.47037 * 300.00493 * 17 16 15 36 36 H 1.09003 * 109.46480 * 60.00398 * 17 16 15 37 37 H 1.08994 * 109.47239 * 299.99825 * 18 17 16 38 38 H 1.09006 * 109.46733 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.47237 * 179.97438 * 19 18 17 40 40 H 1.09004 * 109.47242 * 59.99175 * 19 18 17 41 41 H 1.09004 * 109.46741 * 299.99732 * 20 19 18 42 42 H 1.09001 * 109.46917 * 180.02562 * 20 19 18 43 43 H 1.09002 * 109.47196 * 180.02562 * 21 20 19 44 44 H 1.09004 * 109.47346 * 60.00260 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1938 0.0000 10 6 4.0141 -2.6146 0.0013 11 6 4.8738 -3.1704 -0.8841 12 7 5.0354 -4.4566 -0.4961 13 6 5.8805 -5.4533 -1.1584 14 6 6.8673 -6.0387 -0.1463 15 6 7.7503 -7.0792 -0.8383 16 6 8.7367 -7.6651 0.1740 17 6 9.6954 -6.5695 0.6447 18 6 10.6822 -7.1555 1.6565 19 6 11.4800 -8.2822 0.9969 20 6 10.5213 -9.3778 0.5261 21 6 9.5345 -8.7918 -0.4856 22 7 4.3233 -4.6523 0.5582 23 7 3.7020 -3.5731 0.8806 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6794 0.8895 26 1 3.8746 -0.6805 -0.8905 27 1 5.3364 -2.6854 -1.7310 28 1 6.4314 -4.9801 -1.9712 29 1 5.2552 -6.2509 -1.5594 30 1 6.3164 -6.5119 0.6665 31 1 7.4926 -5.2410 0.2547 32 1 7.1253 -7.8770 -1.2396 33 1 8.3012 -6.6056 -1.6508 34 1 8.1883 -8.0600 1.0291 35 1 10.2438 -6.1745 -0.2104 36 1 9.1270 -5.7665 1.1142 37 1 10.1341 -7.5507 2.5116 38 1 11.3655 -6.3750 1.9915 39 1 12.1833 -8.6995 1.7176 40 1 12.0281 -7.8869 0.1417 41 1 9.9732 -9.7731 1.3814 42 1 11.0897 -10.1808 0.0567 43 1 8.8512 -9.5722 -0.8206 44 1 10.0826 -8.3965 -1.3408 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900629150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:17 Heat of formation + Delta-G solvation = 32.248094 kcal Electronic energy + Delta-G solvation = -20787.171695 eV Core-core repulsion = 17739.077581 eV Total energy + Delta-G solvation = -3048.094114 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.03342 -39.78901 -36.94299 -35.42326 -34.24671 -33.09938 -31.65019 -31.08777 -29.75762 -27.12299 -25.12991 -24.17990 -23.31547 -22.54392 -21.66384 -21.20234 -20.58266 -18.90496 -18.04690 -17.27212 -16.30523 -16.28864 -16.19091 -15.56698 -15.18449 -15.07165 -14.90720 -14.73109 -14.25191 -14.12564 -13.89798 -13.58450 -13.16595 -12.93179 -12.88286 -12.61543 -12.42714 -12.37316 -12.24542 -11.97449 -11.93148 -11.86995 -11.63294 -11.57900 -11.39934 -11.29669 -10.95202 -10.78415 -10.75060 -10.70967 -9.85571 -8.23766 -6.29178 0.79037 1.41158 1.46018 1.57569 1.63769 1.77014 2.41673 3.10221 3.51795 3.63880 3.78521 3.85532 3.85893 4.02835 4.18323 4.19808 4.30230 4.33599 4.43150 4.50584 4.54285 4.59146 4.63180 4.67798 4.75288 4.77570 4.83979 4.92125 5.03585 5.10625 5.15028 5.19028 5.26026 5.28229 5.34607 5.37752 5.38092 5.38906 5.44623 5.52866 5.63440 5.64934 5.88929 6.33068 6.76019 7.32490 7.73239 8.94142 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.041194 B = 0.002625 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.541377 B =10665.723668 C =10968.127212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.000 4.000 3 Si 0.961 3.039 4 H -0.254 1.254 5 H -0.287 1.287 6 H -0.242 1.242 7 C -0.518 4.518 8 H 0.016 0.984 9 C 0.067 3.933 10 C -0.011 4.011 11 C -0.049 4.049 12 N -0.285 5.285 13 C 0.107 3.893 14 C -0.125 4.125 15 C -0.102 4.102 16 C -0.086 4.086 17 C -0.116 4.116 18 C -0.123 4.123 19 C -0.118 4.118 20 C -0.122 4.122 21 C -0.111 4.111 22 N -0.123 5.123 23 N -0.316 5.316 24 H 0.267 0.733 25 H 0.033 0.967 26 H 0.061 0.939 27 H 0.233 0.767 28 H 0.141 0.859 29 H 0.106 0.894 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.029 -16.353 -5.770 32.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.196 4.196 3 Si 0.783 3.217 4 H -0.179 1.179 5 H -0.213 1.213 6 H -0.165 1.165 7 C -0.556 4.556 8 H 0.034 0.966 9 C 0.028 3.972 10 C -0.150 4.150 11 C -0.200 4.200 12 N -0.080 5.080 13 C -0.012 4.012 14 C -0.164 4.164 15 C -0.140 4.140 16 C -0.104 4.104 17 C -0.153 4.153 18 C -0.161 4.161 19 C -0.155 4.155 20 C -0.159 4.159 21 C -0.148 4.148 22 N -0.102 5.102 23 N -0.182 5.182 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.249 0.751 28 H 0.159 0.841 29 H 0.124 0.876 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 27.468 -17.335 -4.708 32.820 hybrid contribution -0.328 1.265 -0.341 1.351 sum 27.140 -16.069 -5.050 31.942 Atomic orbital electron populations 1.70094 1.08650 1.28270 1.52647 1.26114 0.95746 1.03839 0.93919 0.85511 0.79359 0.77089 0.79761 1.17877 1.21335 1.16544 1.21131 0.91176 0.92773 1.50567 0.96565 1.17970 0.94041 0.86802 0.98408 1.22439 0.99017 0.98691 0.94835 1.23883 1.05442 0.85557 1.05095 1.47714 1.30850 1.10295 1.19124 1.22605 0.92037 0.90359 0.96201 1.21857 0.96833 0.99682 0.97989 1.21518 0.96771 0.97535 0.98184 1.21129 0.95637 0.95735 0.97927 1.21636 0.97056 0.97504 0.99148 1.21556 0.98107 0.98251 0.98185 1.21529 0.97692 0.95906 1.00414 1.21550 0.97487 0.97875 0.99011 1.21557 0.97770 0.97308 0.98183 1.78062 1.08025 1.20655 1.03468 1.75006 1.19768 0.97444 1.25966 0.92445 0.94889 0.92090 0.75078 0.84089 0.87580 0.92493 0.91555 0.90528 0.89705 0.92466 0.91259 0.92992 0.92928 0.92088 0.91993 0.91648 0.92728 0.91358 0.91596 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.26 13.96 21.44 0.30 -61.96 16 2 C 0.00 -0.02 5.47 84.65 0.46 0.45 16 3 Si 0.96 44.01 27.47 68.60 1.88 45.89 16 4 H -0.25 -10.71 7.11 99.48 0.71 -10.01 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 7 C -0.52 -31.72 9.64 25.60 0.25 -31.48 16 8 H 0.02 1.14 7.98 -2.91 -0.02 1.11 16 9 C 0.07 3.26 4.62 29.10 0.13 3.39 16 10 C -0.01 -0.50 6.44 41.60 0.27 -0.23 16 11 C -0.05 -1.60 11.49 83.49 0.96 -0.64 16 12 N -0.28 -8.75 3.44 -347.73 -1.20 -9.94 16 13 C 0.11 1.84 6.46 86.38 0.56 2.40 16 14 C -0.13 -2.05 5.09 30.59 0.16 -1.89 16 15 C -0.10 -1.07 4.68 30.59 0.14 -0.93 16 16 C -0.09 -1.04 2.19 -10.79 -0.02 -1.06 16 17 C -0.12 -1.50 4.96 30.60 0.15 -1.35 16 18 C -0.12 -1.59 5.92 30.59 0.18 -1.41 16 19 C -0.12 -1.27 5.92 30.60 0.18 -1.09 16 20 C -0.12 -1.27 5.92 30.59 0.18 -1.09 16 21 C -0.11 -1.10 5.20 30.59 0.16 -0.94 16 22 N -0.12 -5.10 12.91 37.02 0.48 -4.62 16 23 N -0.32 -15.76 12.40 -48.60 -0.60 -16.36 16 24 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 25 H 0.03 1.61 7.20 -2.38 -0.02 1.60 16 26 H 0.06 2.57 7.55 -2.39 -0.02 2.55 16 27 H 0.23 4.91 8.06 -2.91 -0.02 4.88 16 28 H 0.14 1.32 8.07 -2.39 -0.02 1.30 16 29 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.22 8.12 -2.39 -0.02 1.20 16 31 H 0.07 1.19 6.57 -2.39 -0.02 1.17 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.05 0.81 6.57 -2.39 -0.02 0.79 16 37 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.06 0.76 8.14 -2.38 -0.02 0.75 16 39 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -80.77 349.21 5.51 -75.26 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 0.89 Total: 7.62 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 3.76 Total: -35.88 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -1.02 Total: -92.88 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.89 kcal Total: -80.77 5.51 -75.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900629150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.505 kcal (2) G-P(sol) polarization free energy of solvation -80.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds