Wall clock time and date at job start Mon Mar 30 2020 01:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47341 * 2 1 4 4 C 1.53002 * 109.47032 * 120.00181 * 2 1 3 5 5 H 1.09002 * 109.47211 * 183.39150 * 4 2 1 6 6 C 1.52997 * 109.47433 * 63.38569 * 4 2 1 7 7 N 1.46499 * 109.46718 * 303.38660 * 4 2 1 8 8 C 1.46503 * 120.00147 * 105.27458 * 7 4 2 9 9 C 1.53002 * 109.46814 * 269.99676 * 8 7 4 10 10 H 1.09000 * 109.46949 * 60.00167 * 9 8 7 11 11 O 1.42896 * 109.47146 * 299.99765 * 9 8 7 12 12 C 1.50704 * 109.46956 * 180.02562 * 9 8 7 13 13 H 1.07995 * 119.99949 * 359.97438 * 12 9 8 14 14 C 1.37880 * 119.99921 * 180.02562 * 12 9 8 15 15 N 1.31517 * 119.99934 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 120.00015 * 179.97438 * 14 12 9 17 17 H 1.48498 * 109.47058 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.47088 * 299.99721 * 16 14 12 19 19 H 1.48502 * 109.47309 * 59.99566 * 16 14 12 20 20 C 1.39681 * 120.00211 * 285.27161 * 7 4 2 21 21 C 1.38915 * 120.07232 * 351.93277 * 20 7 4 22 22 C 1.38103 * 119.92211 * 179.76862 * 21 20 7 23 23 C 1.38283 * 120.07819 * 0.51460 * 22 21 20 24 24 C 1.38292 * 120.14631 * 359.74254 * 23 22 21 25 25 C 1.38105 * 120.07746 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.46791 * 69.08765 * 1 2 3 27 27 H 1.08997 * 109.47174 * 189.08744 * 1 2 3 28 28 H 1.09000 * 109.46874 * 309.09141 * 1 2 3 29 29 H 1.09000 * 109.47089 * 239.99627 * 2 1 3 30 30 H 1.08996 * 109.47057 * 178.39061 * 3 2 1 31 31 H 1.08994 * 109.46704 * 298.39146 * 3 2 1 32 32 H 1.08998 * 109.46885 * 58.39335 * 3 2 1 33 33 H 1.09009 * 109.46802 * 295.35517 * 6 4 2 34 34 H 1.08994 * 109.46982 * 55.35589 * 6 4 2 35 35 H 1.08999 * 109.47507 * 175.36163 * 6 4 2 36 36 H 1.09000 * 109.47226 * 150.00013 * 8 7 4 37 37 H 1.08997 * 109.47061 * 29.99366 * 8 7 4 38 38 H 0.96697 * 114.00319 * 299.99852 * 11 9 8 39 39 H 0.96996 * 119.99608 * 0.02562 * 15 14 12 40 40 H 1.07998 * 120.03617 * 0.02562 * 21 20 7 41 41 H 1.08005 * 119.95671 * 180.25359 * 22 21 20 42 42 H 1.07994 * 119.93001 * 179.72201 * 23 22 21 43 43 H 1.08002 * 119.96153 * 179.97438 * 24 23 22 44 44 H 1.07995 * 120.03962 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1283 -0.6690 1.2802 6 6 1.6008 -2.1863 1.2074 7 7 1.4861 -0.0794 2.4440 8 6 0.4085 -0.7309 3.1927 9 6 -0.9437 -0.2802 2.6364 10 1 -1.0139 -0.5562 1.5843 11 8 -1.0634 1.1378 2.7660 12 6 -2.0523 -0.9499 3.4070 13 1 -1.8160 -1.6293 4.2125 14 6 -3.3682 -0.6960 3.0828 15 7 -3.6559 0.1309 2.1015 16 14 -4.7422 -1.5266 4.0375 17 1 -6.0546 -1.0891 3.4977 18 1 -4.6176 -3.0003 3.9032 19 1 -4.6468 -1.1504 5.4709 20 6 1.9855 1.1538 2.8693 21 6 3.1139 1.6937 2.2652 22 6 3.6022 2.9154 2.6850 23 6 2.9754 3.5963 3.7126 24 6 1.8550 3.0592 4.3197 25 6 1.3586 1.8401 3.9016 26 1 -0.3633 0.3668 -0.9600 27 1 -0.3633 -1.0147 0.1623 28 1 -0.3633 0.6480 0.7976 29 1 1.8933 -0.5139 -0.8900 30 1 3.1296 1.4426 0.0289 31 1 1.7005 1.9478 -0.9040 32 1 1.6534 1.9645 0.8752 33 1 0.5133 -2.2412 1.2598 34 1 1.9432 -2.6418 0.2783 35 1 2.0326 -2.7194 2.0543 36 1 0.4787 -0.4549 4.2448 37 1 0.4998 -1.8125 3.0938 38 1 -1.0099 1.4554 3.6778 39 1 -2.9423 0.5619 1.6056 40 1 3.6063 1.1605 1.4655 41 1 4.4771 3.3376 2.2130 42 1 3.3619 4.5494 4.0419 43 1 1.3680 3.5933 5.1222 44 1 0.4838 1.4210 4.3764 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931741738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:32 Heat of formation + Delta-G solvation = 3.749808 kcal Electronic energy + Delta-G solvation = -23742.534200 eV Core-core repulsion = 20660.911557 eV Total energy + Delta-G solvation = -3081.622643 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.11822 -37.39828 -35.89241 -33.50626 -32.10233 -31.18265 -30.27972 -29.21951 -27.17565 -26.61830 -24.65695 -22.66054 -22.47748 -21.42519 -20.48846 -18.45567 -17.58611 -17.10876 -15.88958 -15.32508 -14.89855 -14.64484 -14.28179 -14.09144 -13.77233 -13.71793 -13.33096 -13.10513 -12.65146 -12.47799 -12.35270 -12.06038 -11.83389 -11.57027 -11.33938 -11.19650 -10.99850 -10.88974 -10.80607 -10.57517 -10.50831 -10.18902 -10.12784 -10.03247 -9.88059 -9.50590 -8.87183 -8.41171 -8.33413 -8.04552 -6.58853 -6.32077 -4.18735 1.92000 2.10525 3.40200 3.40990 3.60284 3.63141 4.38037 4.50565 4.99781 5.09911 5.18218 5.32751 5.34759 5.43342 5.54661 5.55469 5.64812 5.70814 5.79299 5.88778 5.93772 6.03404 6.07970 6.09807 6.15623 6.23475 6.27548 6.36563 6.43425 6.45899 6.53128 6.55662 6.61805 6.74143 6.81856 6.93295 7.08448 7.14759 7.33921 7.53171 7.79813 8.02480 8.14380 8.35041 8.85785 9.14830 9.66364 11.04850 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018994 B = 0.006782 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.773107 B = 4127.411736 C = 4848.690861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.106 4.106 3 C -0.157 4.157 4 C 0.157 3.843 5 H 0.065 0.935 6 C -0.164 4.164 7 N -0.609 5.609 8 C 0.093 3.907 9 C 0.170 3.830 10 H 0.086 0.914 11 O -0.572 6.572 12 C -0.654 4.654 13 H 0.046 0.954 14 C 0.037 3.963 15 N -0.891 5.891 16 Si 1.063 2.937 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.289 1.289 20 C 0.237 3.763 21 C -0.203 4.203 22 C -0.089 4.089 23 C -0.193 4.193 24 C -0.080 4.080 25 C -0.184 4.184 26 H 0.039 0.961 27 H 0.056 0.944 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.348 0.652 39 H 0.285 0.715 40 H 0.124 0.876 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.992 0.688 -0.793 13.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.126 4.126 3 C -0.213 4.213 4 C 0.053 3.947 5 H 0.083 0.917 6 C -0.221 4.221 7 N -0.317 5.317 8 C -0.029 4.029 9 C 0.113 3.887 10 H 0.103 0.897 11 O -0.379 6.379 12 C -0.692 4.692 13 H 0.064 0.936 14 C -0.172 4.172 15 N -0.525 5.525 16 Si 0.891 3.109 17 H -0.208 1.208 18 H -0.216 1.216 19 H -0.215 1.215 20 C 0.133 3.867 21 C -0.226 4.226 22 C -0.108 4.108 23 C -0.213 4.213 24 C -0.099 4.099 25 C -0.206 4.206 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.121 0.879 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.195 0.805 39 H 0.097 0.903 40 H 0.142 0.858 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.130 0.870 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.224 0.317 -1.405 11.316 hybrid contribution 1.636 0.023 0.477 1.704 sum 12.859 0.340 -0.928 12.897 Atomic orbital electron populations 1.22585 0.93978 1.02698 1.02948 1.21586 0.97637 0.96454 0.96918 1.22553 0.99743 0.96472 1.02574 1.20891 0.96653 0.92142 0.85011 0.91736 1.22172 1.03555 0.94763 1.01619 1.46764 1.38498 1.18703 1.27712 1.22435 0.88297 0.97229 0.94958 1.20686 0.89501 0.79225 0.99284 0.89666 1.86514 1.96088 1.24711 1.30549 1.22450 0.93460 1.31783 1.21526 0.93596 1.25684 0.99125 0.95704 0.96692 1.70637 1.38097 1.25151 1.18631 0.83652 0.76100 0.75622 0.75483 1.20812 1.21563 1.21525 1.17716 0.91137 0.85610 0.92198 1.20931 0.98478 0.98781 1.04369 1.20687 0.98857 0.94621 0.96617 1.20699 0.99168 1.01037 1.00419 1.20812 0.95566 0.94933 0.98619 1.20824 1.02185 0.96774 1.00858 0.94234 0.92518 0.87867 0.91883 0.92864 0.93982 0.90092 0.90471 0.91833 0.92395 0.92108 0.90816 0.80502 0.90301 0.85815 0.87284 0.87530 0.86989 0.85818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 7.05 37.16 0.26 -2.78 16 2 C -0.11 -1.61 2.76 -90.62 -0.25 -1.86 16 3 C -0.16 -2.35 7.31 37.16 0.27 -2.08 16 4 C 0.16 2.34 2.51 -67.93 -0.17 2.17 16 5 H 0.06 0.88 6.77 -51.93 -0.35 0.53 16 6 C -0.16 -2.29 7.55 37.16 0.28 -2.01 16 7 N -0.61 -10.34 2.15 -164.18 -0.35 -10.69 16 8 C 0.09 1.80 4.23 -4.04 -0.02 1.78 16 9 C 0.17 3.92 1.49 -27.88 -0.04 3.88 16 10 H 0.09 2.06 3.28 -51.93 -0.17 1.89 16 11 O -0.57 -13.55 9.23 -35.23 -0.33 -13.88 16 12 C -0.65 -17.25 8.76 -34.44 -0.30 -17.56 16 13 H 0.05 1.20 7.74 -52.49 -0.41 0.80 16 14 C 0.04 1.03 5.40 -17.82 -0.10 0.93 16 15 N -0.89 -26.34 13.53 55.43 0.75 -25.59 16 16 Si 1.06 24.49 29.90 -169.99 -5.08 19.41 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 20 C 0.24 4.04 4.84 -83.78 -0.41 3.63 16 21 C -0.20 -3.08 6.11 -39.38 -0.24 -3.32 16 22 C -0.09 -1.26 10.04 -39.61 -0.40 -1.66 16 23 C -0.19 -2.78 10.04 -39.55 -0.40 -3.18 16 24 C -0.08 -1.25 10.04 -39.61 -0.40 -1.65 16 25 C -0.18 -3.19 7.75 -39.38 -0.31 -3.49 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.08 5.04 -51.93 -0.26 0.81 16 28 H 0.10 2.23 4.31 -51.93 -0.22 2.01 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.69 5.92 -51.93 -0.31 0.39 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.42 4.85 -51.93 -0.25 1.17 16 33 H 0.08 1.26 5.01 -51.92 -0.26 1.00 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.77 7.83 -51.93 -0.41 0.36 16 36 H 0.06 1.19 6.56 -51.93 -0.34 0.85 16 37 H 0.07 1.38 5.67 -51.93 -0.29 1.09 16 38 H 0.35 7.82 6.52 45.56 0.30 8.12 16 39 H 0.29 8.53 6.47 -40.82 -0.26 8.27 16 40 H 0.12 1.72 4.02 -52.49 -0.21 1.51 16 41 H 0.11 1.28 8.06 -52.48 -0.42 0.85 16 42 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 44 H 0.12 2.25 4.15 -52.49 -0.22 2.03 16 LS Contribution 312.87 15.07 4.71 4.71 Total: -1.00 -28.60 312.87 -7.93 -36.53 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -5.43 Total: 16.71 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: -2.21 Total: -27.19 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.40 Total: -36.29 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.33 Total: -13.88 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.08 Total: 19.41 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.60 -7.93 -36.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931741738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.280 kcal (2) G-P(sol) polarization free energy of solvation -28.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds