Wall clock time and date at job start Mon Mar 30 2020 01:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47414 * 2 1 4 4 C 1.53001 * 109.46942 * 120.00317 * 2 1 3 5 5 H 1.09004 * 109.47049 * 299.99524 * 4 2 1 6 6 C 1.52993 * 109.47325 * 59.99628 * 4 2 1 7 7 N 1.46502 * 109.46991 * 179.97438 * 4 2 1 8 8 C 1.46496 * 119.99927 * 303.65583 * 7 4 2 9 9 C 1.52998 * 109.47667 * 270.00134 * 8 7 4 10 10 H 1.08998 * 109.46875 * 59.99927 * 9 8 7 11 11 O 1.42905 * 109.47193 * 300.00345 * 9 8 7 12 12 C 1.50696 * 109.47408 * 180.02562 * 9 8 7 13 13 H 1.07995 * 120.00067 * 0.02562 * 12 9 8 14 14 C 1.37886 * 119.99849 * 179.72493 * 12 9 8 15 15 N 1.31509 * 119.99541 * 180.27630 * 14 12 9 16 16 Si 1.86798 * 120.00049 * 0.27727 * 14 12 9 17 17 H 1.48494 * 109.47456 * 89.99833 * 16 14 12 18 18 H 1.48500 * 109.47106 * 210.00258 * 16 14 12 19 19 H 1.48509 * 109.47066 * 329.99823 * 16 14 12 20 20 C 1.39677 * 119.99766 * 123.65991 * 7 4 2 21 21 C 1.38912 * 120.07700 * 5.89009 * 20 7 4 22 22 C 1.38102 * 119.92211 * 179.76799 * 21 20 7 23 23 C 1.38286 * 120.07556 * 0.50973 * 22 21 20 24 24 C 1.38282 * 120.15059 * 359.74263 * 23 22 21 25 25 C 1.38104 * 120.07315 * 359.97438 * 24 23 22 26 26 H 1.09004 * 109.46860 * 300.00043 * 1 2 3 27 27 H 1.09003 * 109.46836 * 59.99593 * 1 2 3 28 28 H 1.08996 * 109.47446 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46860 * 239.99957 * 2 1 3 30 30 H 1.09001 * 109.47335 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47451 * 300.00031 * 3 2 1 32 32 H 1.09004 * 109.47142 * 60.00130 * 3 2 1 33 33 H 1.09003 * 109.47451 * 180.02562 * 6 4 2 34 34 H 1.09001 * 109.47335 * 300.00147 * 6 4 2 35 35 H 1.09001 * 109.47580 * 60.00222 * 6 4 2 36 36 H 1.09006 * 109.46864 * 150.00392 * 8 7 4 37 37 H 1.08994 * 109.47137 * 30.00648 * 8 7 4 38 38 H 0.96703 * 113.99717 * 299.99765 * 11 9 8 39 39 H 0.97007 * 119.99573 * 179.97438 * 15 14 12 40 40 H 1.07997 * 120.03525 * 0.02562 * 21 20 7 41 41 H 1.08005 * 119.96006 * 180.24563 * 22 21 20 42 42 H 1.08008 * 119.92032 * 179.72329 * 23 22 21 43 43 H 1.08002 * 119.95913 * 179.97438 * 24 23 22 44 44 H 1.08003 * 120.03259 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5299 -2.1637 1.2492 7 7 3.5050 -0.7219 1.2489 8 6 4.2370 -1.2852 0.1119 9 6 4.4915 -2.7740 0.3562 10 1 3.5390 -3.2919 0.4676 11 8 5.2640 -2.9360 1.5475 12 6 5.2451 -3.3533 -0.8132 13 1 5.5158 -2.7227 -1.6471 14 6 5.5944 -4.6872 -0.8157 15 7 6.2567 -5.1915 -1.8338 16 14 5.1267 -5.7779 0.6268 17 1 3.7932 -6.3824 0.3785 18 1 6.1374 -6.8548 0.7813 19 1 5.0776 -4.9634 1.8677 20 6 4.2037 -0.1853 2.3328 21 6 3.5166 0.2373 3.4637 22 6 4.2111 0.7629 4.5354 23 6 5.5880 0.8785 4.4795 24 6 6.2747 0.4636 3.3532 25 6 5.5869 -0.0683 2.2802 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.8928 -2.6775 2.1394 34 1 0.4399 -2.1637 1.2492 35 1 1.8932 -2.6777 0.3593 36 1 5.1897 -0.7673 0.0005 37 1 3.6479 -1.1617 -0.7967 38 1 6.1267 -2.5000 1.5192 39 1 6.5028 -6.1298 -1.8354 40 1 2.4409 0.1510 3.5064 41 1 3.6779 1.0879 5.4166 42 1 6.1282 1.2941 5.3174 43 1 7.3500 0.5557 3.3126 44 1 6.1238 -0.3917 1.4006 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931741739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:35 Heat of formation + Delta-G solvation = -19.791070 kcal Electronic energy + Delta-G solvation = -23054.347722 eV Core-core repulsion = 19971.704270 eV Total energy + Delta-G solvation = -3082.643452 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.69791 -37.50560 -36.04112 -33.72499 -32.25643 -30.74605 -30.26591 -29.50192 -27.83318 -26.71058 -24.99653 -23.24909 -22.16453 -21.06227 -20.30882 -19.17301 -17.62881 -17.06174 -15.70981 -15.05477 -14.93379 -14.68153 -14.45032 -14.31053 -14.03090 -13.66139 -13.53026 -13.06076 -12.84183 -12.66510 -12.45669 -12.27812 -12.17263 -11.91278 -11.64371 -11.43306 -11.17426 -11.05540 -11.00087 -10.80060 -10.71899 -10.53008 -10.34863 -10.13421 -10.00044 -9.39530 -8.95662 -8.65021 -8.52416 -8.31359 -6.67221 -6.15556 -4.27032 1.84840 2.06792 3.37017 3.47345 3.55930 3.75506 4.32267 4.52242 4.77102 4.99879 5.10518 5.19756 5.23904 5.29813 5.42262 5.52455 5.59988 5.65583 5.67765 5.72529 5.82893 5.86298 5.91087 5.91967 5.98299 6.03966 6.08515 6.16347 6.20893 6.31966 6.35288 6.41708 6.43473 6.53345 6.60944 6.75714 6.88432 7.02190 7.24824 7.35400 7.49944 7.85267 8.06199 8.25392 8.80232 9.05074 9.49820 10.94833 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.007483 C = 0.005701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.567577 B = 3741.043739 C = 4910.158060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.139 4.139 4 C 0.154 3.846 5 H 0.083 0.917 6 C -0.172 4.172 7 N -0.610 5.610 8 C 0.102 3.898 9 C 0.176 3.824 10 H 0.061 0.939 11 O -0.572 6.572 12 C -0.567 4.567 13 H 0.071 0.929 14 C 0.086 3.914 15 N -0.892 5.892 16 Si 0.868 3.132 17 H -0.289 1.289 18 H -0.296 1.296 19 H -0.215 1.215 20 C 0.247 3.753 21 C -0.213 4.213 22 C -0.076 4.076 23 C -0.197 4.197 24 C -0.072 4.072 25 C -0.192 4.192 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.351 0.649 39 H 0.265 0.735 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.142 12.461 8.026 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 C -0.197 4.197 4 C 0.049 3.951 5 H 0.101 0.899 6 C -0.230 4.230 7 N -0.316 5.316 8 C -0.021 4.021 9 C 0.117 3.883 10 H 0.078 0.922 11 O -0.377 6.377 12 C -0.604 4.604 13 H 0.089 0.911 14 C -0.118 4.118 15 N -0.529 5.529 16 Si 0.695 3.305 17 H -0.216 1.216 18 H -0.223 1.223 19 H -0.138 1.138 20 C 0.143 3.857 21 C -0.235 4.235 22 C -0.094 4.094 23 C -0.218 4.218 24 C -0.091 4.091 25 C -0.214 4.214 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.197 0.803 39 H 0.074 0.926 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.131 0.869 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.695 11.900 7.963 16.752 hybrid contribution 0.335 -0.554 0.202 0.678 sum -8.359 11.347 8.165 16.288 Atomic orbital electron populations 1.21855 0.94966 1.01951 1.01474 1.21515 0.95567 0.96693 0.99206 1.21735 1.01690 0.95430 1.00833 1.20993 0.80371 0.95832 0.97862 0.89866 1.22419 1.00281 0.96769 1.03492 1.46741 1.03723 1.62846 1.18325 1.22257 0.95975 0.96549 0.87281 1.20354 0.92786 0.90630 0.84483 0.92171 1.86723 1.32075 1.77596 1.41356 1.21484 1.38437 0.95766 1.04744 0.91050 1.24957 0.93118 0.98096 0.95679 1.69957 1.38055 1.14172 1.30720 0.87066 0.77396 0.79524 0.86531 1.21587 1.22327 1.13752 1.17761 0.91192 0.89808 0.86947 1.20592 0.99211 1.09356 0.94349 1.20730 0.94216 0.97486 0.97009 1.20714 0.94306 1.07675 0.99070 1.20821 0.98982 0.96340 0.92983 1.20718 0.92656 1.07452 1.00556 0.92918 0.92744 0.92185 0.90469 0.92264 0.93243 0.93221 0.92192 0.92210 0.91217 0.91264 0.90927 0.80274 0.92601 0.86804 0.87214 0.87418 0.86861 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.84 37.16 0.33 -1.16 16 2 C -0.11 -1.37 2.27 -90.62 -0.21 -1.58 16 3 C -0.14 -1.68 9.04 37.15 0.34 -1.34 16 4 C 0.15 2.14 2.15 -67.93 -0.15 2.00 16 5 H 0.08 1.09 5.37 -51.93 -0.28 0.81 16 6 C -0.17 -2.52 8.01 37.15 0.30 -2.23 16 7 N -0.61 -9.81 1.71 -164.19 -0.28 -10.09 16 8 C 0.10 1.87 4.50 -4.05 -0.02 1.85 16 9 C 0.18 3.91 2.32 -27.89 -0.06 3.85 16 10 H 0.06 1.40 4.85 -51.93 -0.25 1.15 16 11 O -0.57 -12.86 8.91 -35.23 -0.31 -13.18 16 12 C -0.57 -15.17 9.34 -34.44 -0.32 -15.50 16 13 H 0.07 2.05 7.99 -52.49 -0.42 1.64 16 14 C 0.09 2.44 5.47 -17.82 -0.10 2.35 16 15 N -0.89 -26.90 13.96 55.43 0.77 -26.12 16 16 Si 0.87 21.86 26.99 -169.99 -4.59 17.27 16 17 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 18 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 19 H -0.22 -5.36 5.30 56.52 0.30 -5.06 16 20 C 0.25 4.03 6.09 -83.79 -0.51 3.52 16 21 C -0.21 -3.18 9.27 -39.38 -0.37 -3.54 16 22 C -0.08 -1.04 10.04 -39.61 -0.40 -1.44 16 23 C -0.20 -2.72 10.04 -39.55 -0.40 -3.12 16 24 C -0.07 -1.05 10.04 -39.61 -0.40 -1.45 16 25 C -0.19 -3.09 7.89 -39.38 -0.31 -3.40 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 29 H 0.08 1.08 6.55 -51.93 -0.34 0.74 16 30 H 0.06 0.81 7.60 -51.93 -0.39 0.41 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.72 6.43 -51.93 -0.33 0.39 16 35 H 0.07 1.16 6.04 -51.93 -0.31 0.85 16 36 H 0.07 1.28 5.98 -51.93 -0.31 0.97 16 37 H 0.07 1.32 6.24 -51.93 -0.32 1.00 16 38 H 0.35 7.33 7.53 45.56 0.34 7.68 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 40 H 0.11 1.55 5.82 -52.49 -0.31 1.25 16 41 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 42 H 0.11 1.25 8.06 -52.48 -0.42 0.83 16 43 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 44 H 0.12 2.01 5.29 -52.48 -0.28 1.73 16 LS Contribution 331.71 15.07 5.00 5.00 Total: -1.00 -29.88 331.71 -7.84 -37.73 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -6.16 Total: 10.61 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -2.27 Total: -21.21 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.49 Total: -36.22 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.31 Total: -13.18 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.59 Total: 17.27 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.88 -7.84 -37.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931741739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.934 kcal (2) G-P(sol) polarization free energy of solvation -29.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds