Wall clock time and date at job start Mon Mar 30 2020 01:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47414 * 2 1 4 4 C 1.53001 * 109.46942 * 120.00317 * 2 1 3 5 5 H 1.09004 * 109.47049 * 299.99524 * 4 2 1 6 6 C 1.52993 * 109.47325 * 59.99628 * 4 2 1 7 7 N 1.46502 * 109.46991 * 179.97438 * 4 2 1 8 8 C 1.46496 * 119.99927 * 303.65583 * 7 4 2 9 9 C 1.52998 * 109.47667 * 270.00134 * 8 7 4 10 10 H 1.08998 * 109.46875 * 59.99927 * 9 8 7 11 11 O 1.42905 * 109.47193 * 300.00345 * 9 8 7 12 12 C 1.50696 * 109.47408 * 180.02562 * 9 8 7 13 13 H 1.07995 * 120.00067 * 0.02562 * 12 9 8 14 14 C 1.37886 * 119.99849 * 179.72493 * 12 9 8 15 15 N 1.31509 * 119.99541 * 180.27630 * 14 12 9 16 16 Si 1.86798 * 120.00049 * 0.27727 * 14 12 9 17 17 H 1.48494 * 109.47456 * 89.99833 * 16 14 12 18 18 H 1.48500 * 109.47106 * 210.00258 * 16 14 12 19 19 H 1.48509 * 109.47066 * 329.99823 * 16 14 12 20 20 C 1.39677 * 119.99766 * 123.65991 * 7 4 2 21 21 C 1.38912 * 120.07700 * 5.89009 * 20 7 4 22 22 C 1.38102 * 119.92211 * 179.76799 * 21 20 7 23 23 C 1.38286 * 120.07556 * 0.50973 * 22 21 20 24 24 C 1.38282 * 120.15059 * 359.74263 * 23 22 21 25 25 C 1.38104 * 120.07315 * 359.97438 * 24 23 22 26 26 H 1.09004 * 109.46860 * 300.00043 * 1 2 3 27 27 H 1.09003 * 109.46836 * 59.99593 * 1 2 3 28 28 H 1.08996 * 109.47446 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46860 * 239.99957 * 2 1 3 30 30 H 1.09001 * 109.47335 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47451 * 300.00031 * 3 2 1 32 32 H 1.09004 * 109.47142 * 60.00130 * 3 2 1 33 33 H 1.09003 * 109.47451 * 180.02562 * 6 4 2 34 34 H 1.09001 * 109.47335 * 300.00147 * 6 4 2 35 35 H 1.09001 * 109.47580 * 60.00222 * 6 4 2 36 36 H 1.09006 * 109.46864 * 150.00392 * 8 7 4 37 37 H 1.08994 * 109.47137 * 30.00648 * 8 7 4 38 38 H 0.96703 * 113.99717 * 299.99765 * 11 9 8 39 39 H 0.97007 * 119.99573 * 179.97438 * 15 14 12 40 40 H 1.07997 * 120.03525 * 0.02562 * 21 20 7 41 41 H 1.08005 * 119.96006 * 180.24563 * 22 21 20 42 42 H 1.08008 * 119.92032 * 179.72329 * 23 22 21 43 43 H 1.08002 * 119.95913 * 179.97438 * 24 23 22 44 44 H 1.08003 * 120.03259 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5299 -2.1637 1.2492 7 7 3.5050 -0.7219 1.2489 8 6 4.2370 -1.2852 0.1119 9 6 4.4915 -2.7740 0.3562 10 1 3.5390 -3.2919 0.4676 11 8 5.2640 -2.9360 1.5475 12 6 5.2451 -3.3533 -0.8132 13 1 5.5158 -2.7227 -1.6471 14 6 5.5944 -4.6872 -0.8157 15 7 6.2567 -5.1915 -1.8338 16 14 5.1267 -5.7779 0.6268 17 1 3.7932 -6.3824 0.3785 18 1 6.1374 -6.8548 0.7813 19 1 5.0776 -4.9634 1.8677 20 6 4.2037 -0.1853 2.3328 21 6 3.5166 0.2373 3.4637 22 6 4.2111 0.7629 4.5354 23 6 5.5880 0.8785 4.4795 24 6 6.2747 0.4636 3.3532 25 6 5.5869 -0.0683 2.2802 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.8928 -2.6775 2.1394 34 1 0.4399 -2.1637 1.2492 35 1 1.8932 -2.6777 0.3593 36 1 5.1897 -0.7673 0.0005 37 1 3.6479 -1.1617 -0.7967 38 1 6.1267 -2.5000 1.5192 39 1 6.5028 -6.1298 -1.8354 40 1 2.4409 0.1510 3.5064 41 1 3.6779 1.0879 5.4166 42 1 6.1282 1.2941 5.3174 43 1 7.3500 0.5557 3.3126 44 1 6.1238 -0.3917 1.4006 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931741739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:35 Heat of formation + Delta-G solvation = -36.621797 kcal Electronic energy + Delta-G solvation = -23055.077557 eV Core-core repulsion = 19971.704270 eV Total energy + Delta-G solvation = -3083.373287 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91218 -38.66272 -37.68372 -34.95077 -34.40306 -31.90851 -31.51917 -30.88355 -29.21404 -27.78926 -26.60227 -24.37087 -23.53082 -22.39657 -21.66908 -20.43083 -19.20463 -18.59432 -17.07041 -16.71963 -16.49885 -16.11300 -15.77292 -15.53220 -15.34304 -14.89268 -14.79025 -14.75162 -14.27164 -13.84133 -13.71806 -13.51202 -13.37790 -13.07101 -13.00824 -12.88929 -12.66557 -12.55280 -12.43716 -12.09601 -12.00581 -11.80328 -11.70233 -11.46441 -11.29110 -11.00733 -10.82678 -10.55994 -10.12700 -9.64422 -8.37341 -7.92474 -6.50275 0.71739 0.92887 1.34201 1.40888 1.71565 2.32062 2.40721 3.01762 3.18475 3.70848 3.96712 4.02071 4.05829 4.16099 4.24684 4.34284 4.44715 4.51259 4.53825 4.59994 4.64644 4.76333 4.77907 4.82996 4.88355 4.93917 5.00804 5.02154 5.05761 5.12751 5.20982 5.28918 5.33726 5.44428 5.44744 5.49706 5.55899 5.62056 5.78567 5.90741 6.05983 6.20512 6.51643 6.65563 6.84514 7.18119 7.33319 8.76831 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.007483 C = 0.005701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.567577 B = 3741.043739 C = 4910.158060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.133 4.133 4 C 0.152 3.848 5 H 0.099 0.901 6 C -0.167 4.167 7 N -0.611 5.611 8 C 0.120 3.880 9 C 0.185 3.815 10 H 0.056 0.944 11 O -0.574 6.574 12 C -0.562 4.562 13 H 0.040 0.960 14 C 0.034 3.966 15 N -0.937 5.937 16 Si 0.932 3.068 17 H -0.287 1.287 18 H -0.299 1.299 19 H -0.210 1.210 20 C 0.226 3.774 21 C -0.218 4.218 22 C -0.077 4.077 23 C -0.198 4.198 24 C -0.080 4.080 25 C -0.212 4.212 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.358 0.642 39 H 0.266 0.734 40 H 0.127 0.873 41 H 0.139 0.861 42 H 0.133 0.867 43 H 0.129 0.871 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.726 13.781 10.465 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 C -0.191 4.191 4 C 0.049 3.951 5 H 0.117 0.883 6 C -0.225 4.225 7 N -0.318 5.318 8 C -0.004 4.004 9 C 0.127 3.873 10 H 0.074 0.926 11 O -0.381 6.381 12 C -0.600 4.600 13 H 0.058 0.942 14 C -0.166 4.166 15 N -0.577 5.577 16 Si 0.757 3.243 17 H -0.213 1.213 18 H -0.227 1.227 19 H -0.132 1.132 20 C 0.123 3.877 21 C -0.240 4.240 22 C -0.095 4.095 23 C -0.218 4.218 24 C -0.099 4.099 25 C -0.235 4.235 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.205 0.795 39 H 0.074 0.926 40 H 0.145 0.855 41 H 0.157 0.843 42 H 0.151 0.849 43 H 0.147 0.853 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.287 13.248 10.422 19.747 hybrid contribution 0.869 -0.868 -0.538 1.341 sum -9.418 12.379 9.884 18.429 Atomic orbital electron populations 1.21823 0.92883 1.02404 1.02668 1.21472 0.97231 0.96470 0.97498 1.21670 1.00238 0.95307 1.01839 1.21167 0.79053 0.95649 0.99241 0.88282 1.22379 1.02078 0.96789 1.01285 1.46625 1.04443 1.63060 1.17709 1.21775 0.96261 0.94010 0.88366 1.20197 0.91583 0.92962 0.82596 0.92621 1.86657 1.32624 1.77956 1.40829 1.21830 1.37652 0.95307 1.05214 0.94197 1.25736 0.93365 0.99668 0.97859 1.70076 1.40191 1.14610 1.32791 0.86083 0.76827 0.77636 0.83726 1.21340 1.22651 1.13167 1.17994 0.91448 0.90735 0.87493 1.20824 1.00019 1.09113 0.94060 1.21116 0.94441 0.96435 0.97526 1.21075 0.94687 1.06703 0.99303 1.21086 0.99990 0.95926 0.92849 1.20772 0.93007 1.08776 1.00898 0.91431 0.91878 0.92094 0.92552 0.94425 0.92192 0.92205 0.93880 0.89393 0.93715 0.91767 0.91128 0.79481 0.92557 0.85492 0.84317 0.84945 0.85308 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.84 71.98 0.64 -1.88 16 2 C -0.11 -2.52 2.27 -10.80 -0.02 -2.55 16 3 C -0.13 -3.00 9.04 71.98 0.65 -2.35 16 4 C 0.15 4.02 2.15 44.99 0.10 4.12 16 5 H 0.10 2.32 5.37 -2.38 -0.01 2.31 16 6 C -0.17 -4.72 8.01 71.98 0.58 -4.14 16 7 N -0.61 -19.34 1.71 -673.38 -1.15 -20.49 16 8 C 0.12 4.49 4.50 86.38 0.39 4.88 16 9 C 0.19 8.34 2.32 29.85 0.07 8.41 16 10 H 0.06 2.60 4.85 -2.39 -0.01 2.59 16 11 O -0.57 -25.64 8.91 -148.98 -1.33 -26.97 16 12 C -0.56 -30.96 9.34 25.60 0.24 -30.72 16 13 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 14 C 0.03 1.94 5.47 84.66 0.46 2.41 16 15 N -0.94 -58.06 13.96 21.45 0.30 -57.76 16 16 Si 0.93 45.89 26.99 68.60 1.85 47.74 16 17 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 18 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 19 H -0.21 -10.04 5.30 99.48 0.53 -9.51 16 20 C 0.23 7.12 6.09 38.21 0.23 7.36 16 21 C -0.22 -5.97 9.27 22.40 0.21 -5.76 16 22 C -0.08 -1.86 10.04 22.25 0.22 -1.63 16 23 C -0.20 -4.86 10.04 22.29 0.22 -4.64 16 24 C -0.08 -2.19 10.04 22.25 0.22 -1.97 16 25 C -0.21 -6.74 7.89 22.40 0.18 -6.57 16 26 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.08 6.43 -2.39 -0.02 1.07 16 29 H 0.06 1.56 6.55 -2.38 -0.02 1.55 16 30 H 0.04 1.00 7.60 -2.39 -0.02 0.98 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 1.93 6.43 -2.39 -0.02 1.92 16 35 H 0.04 1.48 6.04 -2.39 -0.01 1.46 16 36 H 0.06 2.46 5.98 -2.38 -0.01 2.44 16 37 H 0.07 2.66 6.24 -2.39 -0.01 2.64 16 38 H 0.36 15.00 7.53 -74.06 -0.56 14.44 16 39 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 40 H 0.13 3.06 5.82 -2.91 -0.02 3.04 16 41 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 42 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 43 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 44 H 0.11 3.66 5.29 -2.91 -0.02 3.64 16 Total: -1.00 -64.64 331.71 4.31 -60.32 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.26 Total: 32.19 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 4.38 Total: -35.04 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -0.85 Total: -78.25 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -1.33 Total: -26.97 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.85 Total: 47.74 kcal Total: -64.64 4.31 -60.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931741739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.701 kcal (2) G-P(sol) polarization free energy of solvation -64.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds