Wall clock time and date at job start Mon Mar 30 2020 02:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.48515 * 110.99407 * 2 1 4 4 C 1.54293 * 104.70788 * 200.72042 * 3 2 1 5 5 H 1.08999 * 112.83983 * 261.17131 * 4 3 2 6 6 C 1.54286 * 109.31748 * 135.94418 * 4 3 2 7 7 N 1.48520 * 104.71227 * 224.05836 * 6 4 3 8 8 C 1.46901 * 111.00064 * 159.27490 * 7 6 4 9 9 C 1.53006 * 109.47241 * 54.60142 * 8 7 6 10 10 H 1.08998 * 109.46927 * 54.99809 * 9 8 7 11 11 C 1.47210 * 109.46768 * 295.00129 * 9 8 7 12 12 N 5.74283 * 108.19147 * 338.98094 * 2 1 3 13 13 C 1.52996 * 109.47442 * 175.00301 * 9 8 7 14 14 C 1.50700 * 109.47177 * 185.00174 * 13 9 8 15 15 H 1.08002 * 119.99878 * 359.97438 * 14 13 9 16 16 C 1.37877 * 120.00026 * 179.97438 * 14 13 9 17 17 N 1.31509 * 119.99993 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00023 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47194 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47157 * 119.99745 * 18 16 14 21 21 H 1.48506 * 109.47143 * 240.00159 * 18 16 14 22 22 C 1.48511 * 104.20768 * 39.73076 * 7 6 4 23 23 C 1.54290 * 104.71309 * 320.26821 * 22 7 6 24 24 C 1.52997 * 112.38373 * 261.44446 * 23 22 7 25 25 C 1.50106 * 110.82131 * 244.63481 * 2 1 3 26 26 H 1.08991 * 109.46884 * 60.12970 * 1 2 3 27 27 H 1.08999 * 109.46662 * 180.12540 * 1 2 3 28 28 H 1.09003 * 109.47092 * 300.12608 * 1 2 3 29 29 H 1.09006 * 110.38850 * 81.91836 * 3 2 1 30 30 H 1.08996 * 110.39409 * 319.52862 * 3 2 1 31 31 H 1.08997 * 110.39091 * 105.25453 * 6 4 3 32 32 H 1.08998 * 110.48973 * 342.91453 * 6 4 3 33 33 H 1.08997 * 109.47667 * 174.60124 * 8 7 6 34 34 H 1.09006 * 109.47231 * 294.60613 * 8 7 6 35 35 H 1.09002 * 109.46508 * 305.00152 * 13 9 8 36 36 H 1.08996 * 109.47090 * 65.00027 * 13 9 8 37 37 H 0.97002 * 120.00174 * 180.02562 * 17 16 14 38 38 H 1.09003 * 110.39182 * 201.46311 * 22 7 6 39 39 H 1.08997 * 110.48978 * 79.12673 * 22 7 6 40 40 H 1.09002 * 109.47153 * 58.98342 * 24 23 22 41 41 H 1.09001 * 109.46832 * 298.98533 * 24 23 22 42 42 H 1.09004 * 109.47261 * 178.98514 * 24 23 22 43 43 H 1.09005 * 110.63923 * 40.88105 * 25 2 1 44 44 H 1.08998 * 110.87170 * 277.99692 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0012 1.3866 0.0000 4 6 3.4447 1.2522 -0.5280 5 1 4.1877 1.2419 0.2695 6 6 3.7184 2.3700 -1.5556 7 7 4.4207 1.6905 -2.6740 8 6 4.3189 2.4735 -3.9128 9 6 4.8297 3.8938 -3.6618 10 1 5.8408 3.8501 -3.2570 11 6 3.9447 4.5705 -2.6995 12 7 3.2619 5.0928 -1.9569 13 6 4.8407 4.6721 -4.9790 14 6 5.4578 6.0287 -4.7557 15 1 5.8068 6.3080 -3.7725 16 6 5.5769 6.9133 -5.8066 17 7 5.1524 6.5730 -7.0039 18 14 6.3412 8.5951 -5.5297 19 1 6.7343 8.7316 -4.1041 20 1 7.5421 8.7410 -6.3909 21 1 5.3542 9.6501 -5.8736 22 6 3.7185 0.3888 -2.8082 23 6 3.4448 -0.0601 -1.3576 24 6 4.4782 -1.0704 -0.8556 25 6 2.0026 -0.6010 -1.2678 26 1 -0.3633 0.5118 -0.8911 27 1 -0.3632 -1.0277 0.0022 28 1 -0.3633 0.5158 0.8889 29 1 2.0031 1.7926 1.0116 30 1 1.4116 2.0196 -0.6631 31 1 4.3551 3.1395 -1.1192 32 1 2.7819 2.8056 -1.9041 33 1 4.9207 2.0033 -4.6905 34 1 3.2778 2.5132 -4.2331 35 1 5.4243 4.1248 -5.7193 36 1 3.8188 4.7925 -5.3384 37 1 5.2365 7.1952 -7.7433 38 1 4.3551 -0.3356 -3.3161 39 1 2.7811 0.5150 -3.3499 40 1 5.4730 -0.6274 -0.9044 41 1 4.4469 -1.9630 -1.4803 42 1 4.2510 -1.3406 0.1757 43 1 1.4183 -0.2690 -2.1260 44 1 2.0082 -1.6894 -1.2092 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933747181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:23 Heat of formation + Delta-G solvation = 40.044325 kcal Electronic energy + Delta-G solvation = -22206.102035 eV Core-core repulsion = 19158.345991 eV Total energy + Delta-G solvation = -3047.756044 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.64440 -37.71659 -35.69148 -34.03974 -32.96494 -31.58055 -30.78846 -27.30462 -27.24389 -26.11084 -25.00461 -23.14242 -21.90269 -21.29436 -20.68448 -18.98735 -16.96098 -16.52967 -16.20473 -15.53686 -15.01633 -14.94769 -14.52089 -14.23388 -14.13796 -13.55761 -13.37676 -13.19506 -12.88472 -12.68498 -12.50654 -12.41542 -12.18559 -11.85871 -11.79489 -11.54771 -11.29753 -11.21687 -11.02982 -10.97941 -10.78070 -10.68837 -10.62544 -10.53416 -10.40075 -10.26277 -9.56829 -9.22830 -8.77239 -8.47939 -8.32455 -6.11662 -4.14831 3.27139 3.35378 3.40031 3.51461 3.57624 3.78225 4.02067 4.27503 4.39340 4.57887 4.60711 4.76578 4.96606 5.01585 5.11197 5.19681 5.21139 5.25380 5.26553 5.45155 5.47824 5.53942 5.57562 5.63040 5.64772 5.68340 5.71983 5.82757 5.92378 5.98104 6.05574 6.10898 6.16609 6.28086 6.30856 6.50143 6.56071 6.76900 6.86812 7.11329 7.40989 7.49713 7.83435 8.20712 8.35557 8.89851 9.50861 10.99295 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031652 B = 0.003859 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.401860 B = 7254.135439 C = 7574.826937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.514 5.514 3 C 0.036 3.964 4 C -0.085 4.085 5 H 0.094 0.906 6 C 0.028 3.972 7 N -0.507 5.507 8 C 0.052 3.948 9 C 0.004 3.996 10 H 0.111 0.889 11 C 0.247 3.753 12 N -0.480 5.480 13 C 0.032 3.968 14 C -0.526 4.526 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.284 1.284 22 C 0.039 3.961 23 C -0.064 4.064 24 C -0.122 4.122 25 C 0.038 3.962 26 H 0.027 0.973 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.023 0.977 37 H 0.262 0.738 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.547 -16.733 9.817 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.237 5.237 3 C -0.092 4.092 4 C -0.105 4.105 5 H 0.113 0.887 6 C -0.100 4.100 7 N -0.230 5.230 8 C -0.077 4.077 9 C -0.017 4.017 10 H 0.129 0.871 11 C -0.069 4.069 12 N -0.157 5.157 13 C -0.006 4.006 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.210 1.210 22 C -0.089 4.089 23 C -0.065 4.065 24 C -0.179 4.179 25 C -0.090 4.090 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.874 -16.233 11.329 20.386 hybrid contribution -0.632 1.557 -1.271 2.107 sum -5.506 -14.676 10.057 18.624 Atomic orbital electron populations 1.22510 0.88335 1.02016 1.00877 1.65838 1.07950 1.15517 1.34396 1.23244 0.94696 0.89816 1.01439 1.22695 0.96327 0.93849 0.97600 0.88736 1.23634 0.97823 0.96438 0.92098 1.65517 1.49552 1.02920 1.05007 1.22436 1.00352 0.92805 0.92094 1.19357 0.95837 0.91400 0.95155 0.87150 1.29114 0.93399 0.91916 0.92463 1.81059 1.11069 1.11034 1.12539 1.19164 0.98489 0.94561 0.88399 1.21174 1.40374 0.99340 0.95500 0.92451 1.24951 0.95344 0.98560 0.95106 1.69945 1.46654 1.36131 1.00291 0.86536 0.79022 0.84101 0.78437 1.19655 1.20780 1.21003 1.23317 0.97352 0.92769 0.95476 1.21970 0.94600 0.95311 0.94612 1.21603 0.98162 0.97313 1.00819 1.23625 0.94253 1.00207 0.90932 0.95412 0.91282 0.91325 0.90039 0.93574 0.89663 0.93244 0.88464 0.94283 0.94153 0.95828 0.92837 0.89705 0.93847 0.91726 0.92732 0.92226 0.93499 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.54 60.07 0.57 0.68 16 2 N -0.51 -5.65 5.69 -236.99 -1.35 -7.00 16 3 C 0.04 0.43 6.05 -2.25 -0.01 0.42 16 4 C -0.09 -1.04 3.72 -88.08 -0.33 -1.37 16 5 H 0.09 1.14 7.93 -51.93 -0.41 0.72 16 6 C 0.03 0.41 3.90 -2.25 -0.01 0.40 16 7 N -0.51 -7.01 5.49 -230.16 -1.26 -8.27 16 8 C 0.05 0.79 4.74 -3.82 -0.02 0.77 16 9 C 0.00 0.08 2.32 -93.40 -0.22 -0.14 16 10 H 0.11 1.98 8.14 -51.93 -0.42 1.55 16 11 C 0.25 4.97 9.72 -20.76 -0.20 4.77 16 12 N -0.48 -10.23 17.40 42.15 0.73 -9.50 16 13 C 0.03 0.75 4.42 -27.89 -0.12 0.63 16 14 C -0.53 -13.99 8.60 -34.44 -0.30 -14.29 16 15 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 18 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.04 0.45 5.66 -2.26 -0.01 0.44 16 23 C -0.06 -0.68 1.05 -151.97 -0.16 -0.84 16 24 C -0.12 -1.14 8.63 37.16 0.32 -0.82 16 25 C 0.04 0.38 5.76 -1.35 -0.01 0.38 16 26 H 0.03 0.27 7.99 -51.93 -0.41 -0.15 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.61 7.03 -51.93 -0.37 0.24 16 31 H 0.09 1.37 6.41 -51.93 -0.33 1.04 16 32 H 0.05 0.81 5.53 -51.93 -0.29 0.52 16 33 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.04 0.60 7.88 -51.93 -0.41 0.20 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.08 0.89 7.90 -51.93 -0.41 0.47 16 39 H 0.04 0.51 6.84 -51.93 -0.36 0.16 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.50 6.96 -51.93 -0.36 0.13 16 44 H 0.08 0.76 7.90 -51.93 -0.41 0.35 16 LS Contribution 341.99 15.07 5.15 5.15 Total: -1.00 -29.02 341.99 -9.12 -38.14 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -7.52 Total: -2.70 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -0.59 Total: -7.34 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -1.14 Total: -49.53 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.02 -9.12 -38.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933747181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.181 kcal (2) G-P(sol) polarization free energy of solvation -29.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds