Wall clock time and date at job start Mon Mar 30 2020 02:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.48515 * 110.99407 * 2 1 4 4 C 1.54293 * 104.70788 * 200.72042 * 3 2 1 5 5 H 1.08999 * 112.83983 * 261.17131 * 4 3 2 6 6 C 1.54286 * 109.31748 * 135.94418 * 4 3 2 7 7 N 1.48520 * 104.71227 * 224.05836 * 6 4 3 8 8 C 1.46901 * 111.00064 * 159.27490 * 7 6 4 9 9 C 1.53006 * 109.47241 * 54.60142 * 8 7 6 10 10 H 1.08998 * 109.46927 * 54.99809 * 9 8 7 11 11 C 1.47210 * 109.46768 * 295.00129 * 9 8 7 12 12 N 5.74283 * 108.19147 * 338.98094 * 2 1 3 13 13 C 1.52996 * 109.47442 * 175.00301 * 9 8 7 14 14 C 1.50700 * 109.47177 * 185.00174 * 13 9 8 15 15 H 1.08002 * 119.99878 * 359.97438 * 14 13 9 16 16 C 1.37877 * 120.00026 * 179.97438 * 14 13 9 17 17 N 1.31509 * 119.99993 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00023 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47194 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47157 * 119.99745 * 18 16 14 21 21 H 1.48506 * 109.47143 * 240.00159 * 18 16 14 22 22 C 1.48511 * 104.20768 * 39.73076 * 7 6 4 23 23 C 1.54290 * 104.71309 * 320.26821 * 22 7 6 24 24 C 1.52997 * 112.38373 * 261.44446 * 23 22 7 25 25 C 1.50106 * 110.82131 * 244.63481 * 2 1 3 26 26 H 1.08991 * 109.46884 * 60.12970 * 1 2 3 27 27 H 1.08999 * 109.46662 * 180.12540 * 1 2 3 28 28 H 1.09003 * 109.47092 * 300.12608 * 1 2 3 29 29 H 1.09006 * 110.38850 * 81.91836 * 3 2 1 30 30 H 1.08996 * 110.39409 * 319.52862 * 3 2 1 31 31 H 1.08997 * 110.39091 * 105.25453 * 6 4 3 32 32 H 1.08998 * 110.48973 * 342.91453 * 6 4 3 33 33 H 1.08997 * 109.47667 * 174.60124 * 8 7 6 34 34 H 1.09006 * 109.47231 * 294.60613 * 8 7 6 35 35 H 1.09002 * 109.46508 * 305.00152 * 13 9 8 36 36 H 1.08996 * 109.47090 * 65.00027 * 13 9 8 37 37 H 0.97002 * 120.00174 * 180.02562 * 17 16 14 38 38 H 1.09003 * 110.39182 * 201.46311 * 22 7 6 39 39 H 1.08997 * 110.48978 * 79.12673 * 22 7 6 40 40 H 1.09002 * 109.47153 * 58.98342 * 24 23 22 41 41 H 1.09001 * 109.46832 * 298.98533 * 24 23 22 42 42 H 1.09004 * 109.47261 * 178.98514 * 24 23 22 43 43 H 1.09005 * 110.63923 * 40.88105 * 25 2 1 44 44 H 1.08998 * 110.87170 * 277.99692 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0012 1.3866 0.0000 4 6 3.4447 1.2522 -0.5280 5 1 4.1877 1.2419 0.2695 6 6 3.7184 2.3700 -1.5556 7 7 4.4207 1.6905 -2.6740 8 6 4.3189 2.4735 -3.9128 9 6 4.8297 3.8938 -3.6618 10 1 5.8408 3.8501 -3.2570 11 6 3.9447 4.5705 -2.6995 12 7 3.2619 5.0928 -1.9569 13 6 4.8407 4.6721 -4.9790 14 6 5.4578 6.0287 -4.7557 15 1 5.8068 6.3080 -3.7725 16 6 5.5769 6.9133 -5.8066 17 7 5.1524 6.5730 -7.0039 18 14 6.3412 8.5951 -5.5297 19 1 6.7343 8.7316 -4.1041 20 1 7.5421 8.7410 -6.3909 21 1 5.3542 9.6501 -5.8736 22 6 3.7185 0.3888 -2.8082 23 6 3.4448 -0.0601 -1.3576 24 6 4.4782 -1.0704 -0.8556 25 6 2.0026 -0.6010 -1.2678 26 1 -0.3633 0.5118 -0.8911 27 1 -0.3632 -1.0277 0.0022 28 1 -0.3633 0.5158 0.8889 29 1 2.0031 1.7926 1.0116 30 1 1.4116 2.0196 -0.6631 31 1 4.3551 3.1395 -1.1192 32 1 2.7819 2.8056 -1.9041 33 1 4.9207 2.0033 -4.6905 34 1 3.2778 2.5132 -4.2331 35 1 5.4243 4.1248 -5.7193 36 1 3.8188 4.7925 -5.3384 37 1 5.2365 7.1952 -7.7433 38 1 4.3551 -0.3356 -3.3161 39 1 2.7811 0.5150 -3.3499 40 1 5.4730 -0.6274 -0.9044 41 1 4.4469 -1.9630 -1.4803 42 1 4.2510 -1.3406 0.1757 43 1 1.4183 -0.2690 -2.1260 44 1 2.0082 -1.6894 -1.2092 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933747181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:22 Heat of formation + Delta-G solvation = 20.558900 kcal Electronic energy + Delta-G solvation = -22206.946986 eV Core-core repulsion = 19158.345991 eV Total energy + Delta-G solvation = -3048.600995 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.64193 -39.03726 -36.95907 -35.73962 -34.42303 -32.92246 -31.94060 -28.82769 -28.07397 -27.11784 -26.32280 -24.34746 -23.65510 -22.28475 -21.77589 -19.91528 -18.56259 -18.38326 -17.34176 -16.68780 -16.44540 -15.97014 -15.85332 -15.38322 -15.29491 -14.67792 -14.54650 -14.49835 -14.25393 -13.92971 -13.86526 -13.68182 -13.44144 -13.18932 -13.01349 -12.79433 -12.68206 -12.56854 -12.39713 -12.28183 -12.19077 -12.00653 -11.92840 -11.58443 -11.57243 -11.47705 -11.39258 -11.09162 -10.57829 -9.70849 -9.40091 -8.21803 -6.30185 1.37728 1.40646 1.51183 1.89422 1.92470 2.39644 2.84843 3.00349 3.12933 3.20171 3.34912 3.64089 3.67626 4.00454 4.02951 4.17053 4.23569 4.26548 4.33606 4.42131 4.43686 4.54855 4.62194 4.65766 4.69915 4.71668 4.80153 4.86635 4.88420 4.92719 4.94700 5.06430 5.17849 5.20196 5.23708 5.43623 5.48964 5.57626 5.70036 5.75587 5.78102 5.93139 5.95464 6.18058 6.70639 6.84181 7.38616 8.89389 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031652 B = 0.003859 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.401860 B = 7254.135439 C = 7574.826937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.518 5.518 3 C 0.039 3.961 4 C -0.084 4.084 5 H 0.097 0.903 6 C 0.033 3.967 7 N -0.506 5.506 8 C 0.062 3.938 9 C 0.015 3.985 10 H 0.121 0.879 11 C 0.254 3.746 12 N -0.504 5.504 13 C 0.040 3.960 14 C -0.539 4.539 15 H 0.053 0.947 16 C 0.012 3.988 17 N -0.923 5.923 18 Si 0.949 3.051 19 H -0.270 1.270 20 H -0.271 1.271 21 H -0.285 1.285 22 C 0.039 3.961 23 C -0.059 4.059 24 C -0.116 4.116 25 C 0.039 3.961 26 H 0.021 0.979 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.028 0.972 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.116 0.884 34 H 0.034 0.966 35 H 0.038 0.962 36 H -0.002 1.002 37 H 0.264 0.736 38 H 0.104 0.896 39 H 0.042 0.958 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.042 0.958 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.027 -18.320 10.365 21.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.241 5.241 3 C -0.090 4.090 4 C -0.104 4.104 5 H 0.116 0.884 6 C -0.096 4.096 7 N -0.229 5.229 8 C -0.068 4.068 9 C -0.006 4.006 10 H 0.139 0.861 11 C -0.062 4.062 12 N -0.181 5.181 13 C 0.001 3.999 14 C -0.577 4.577 15 H 0.071 0.929 16 C -0.187 4.187 17 N -0.563 5.563 18 Si 0.775 3.225 19 H -0.194 1.194 20 H -0.197 1.197 21 H -0.211 1.211 22 C -0.089 4.089 23 C -0.060 4.060 24 C -0.173 4.173 25 C -0.088 4.088 26 H 0.040 0.960 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.134 0.866 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.017 0.983 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.352 -17.833 11.886 21.868 hybrid contribution -0.827 2.040 -1.426 2.623 sum -5.179 -15.793 10.460 19.638 Atomic orbital electron populations 1.22564 0.87370 1.03060 1.00783 1.65865 1.08933 1.14489 1.34843 1.23162 0.94406 0.90380 1.01007 1.22680 0.96490 0.93910 0.97273 0.88442 1.23478 0.96277 0.96852 0.92970 1.65527 1.49835 1.03537 1.04011 1.22324 1.00200 0.90987 0.93246 1.19259 0.96350 0.92633 0.92398 0.86092 1.29427 0.93071 0.91395 0.92260 1.81046 1.11896 1.11861 1.13334 1.18976 0.96455 0.93905 0.90565 1.21558 1.40030 1.00920 0.95199 0.92887 1.25705 0.95986 1.01955 0.95030 1.70033 1.47878 1.37380 1.00995 0.85635 0.78441 0.80013 0.78444 1.19423 1.19659 1.21100 1.23424 0.97463 0.91672 0.96341 1.21995 0.95553 0.94837 0.93609 1.21564 0.97159 0.97385 1.01198 1.23663 0.93601 1.01128 0.90430 0.96039 0.89636 0.90951 0.89909 0.95419 0.91599 0.95422 0.86579 0.94805 0.94349 0.98314 0.92662 0.87808 0.94023 0.92258 0.90965 0.92102 0.93967 0.88075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.54 127.69 1.22 1.41 16 2 N -0.52 -10.58 5.69 -903.71 -5.14 -15.73 16 3 C 0.04 0.91 6.05 86.43 0.52 1.44 16 4 C -0.08 -1.97 3.72 -9.15 -0.03 -2.01 16 5 H 0.10 2.24 7.93 -2.39 -0.02 2.22 16 6 C 0.03 0.95 3.90 86.43 0.34 1.29 16 7 N -0.51 -13.34 5.49 -882.11 -4.84 -18.18 16 8 C 0.06 1.81 4.74 86.31 0.41 2.22 16 9 C 0.02 0.56 2.32 -12.60 -0.03 0.53 16 10 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 11 C 0.25 10.34 9.72 89.45 0.87 11.21 16 12 N -0.50 -21.87 17.40 20.01 0.35 -21.53 16 13 C 0.04 1.85 4.42 29.85 0.13 1.98 16 14 C -0.54 -28.79 8.60 25.60 0.22 -28.57 16 15 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 16 C 0.01 0.67 5.46 84.66 0.46 1.14 16 17 N -0.92 -53.08 13.29 21.45 0.28 -52.79 16 18 Si 0.95 43.61 29.54 68.60 2.03 45.63 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 22 C 0.04 0.81 5.66 86.43 0.49 1.30 16 23 C -0.06 -1.14 1.05 -50.53 -0.05 -1.19 16 24 C -0.12 -1.84 8.63 71.98 0.62 -1.22 16 25 C 0.04 0.72 5.76 86.11 0.50 1.21 16 26 H 0.02 0.39 7.99 -2.39 -0.02 0.38 16 27 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.03 0.75 7.03 -2.39 -0.02 0.73 16 31 H 0.07 2.14 6.41 -2.39 -0.02 2.13 16 32 H 0.03 0.92 5.53 -2.39 -0.01 0.91 16 33 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.03 1.03 7.88 -2.38 -0.02 1.01 16 35 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 37 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 38 H 0.10 1.83 7.90 -2.39 -0.02 1.81 16 39 H 0.04 0.91 6.84 -2.39 -0.02 0.89 16 40 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.04 0.82 6.96 -2.38 -0.02 0.80 16 44 H 0.10 1.51 7.90 -2.39 -0.02 1.49 16 Total: -1.00 -61.51 341.99 -0.70 -62.21 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.96 Total: 9.64 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 5.66 Total: -9.26 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -9.35 Total: -108.22 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -61.51 -0.70 -62.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933747181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.768 kcal (2) G-P(sol) polarization free energy of solvation -61.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds