Wall clock time and date at job start Mon Mar 30 2020 01:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47279 * 339.10495 * 3 2 1 5 5 C 1.50698 * 109.47124 * 306.22932 * 4 3 2 6 6 O 1.21283 * 119.99827 * 105.38235 * 5 4 3 7 7 N 1.34778 * 119.99851 * 285.38275 * 5 4 3 8 8 C 1.46491 * 120.00175 * 5.32014 * 7 5 4 9 9 C 1.46501 * 119.99608 * 185.32446 * 7 5 4 10 10 H 1.08999 * 109.47250 * 359.97438 * 9 7 5 11 11 C 1.53003 * 109.46709 * 239.99859 * 9 7 5 12 12 C 1.50700 * 109.47312 * 120.00231 * 9 7 5 13 13 H 1.08000 * 119.99671 * 356.63208 * 12 9 7 14 14 C 1.37875 * 119.99972 * 176.64243 * 12 9 7 15 15 N 1.31514 * 120.00408 * 5.76229 * 14 12 9 16 16 Si 1.86805 * 119.99973 * 185.77310 * 14 12 9 17 17 H 1.48499 * 109.47421 * 84.99156 * 16 14 12 18 18 H 1.48494 * 109.47170 * 204.99516 * 16 14 12 19 19 H 1.48502 * 109.46822 * 324.99427 * 16 14 12 20 20 C 1.53002 * 109.47091 * 66.23075 * 4 3 2 21 21 C 1.52998 * 109.47091 * 180.02562 * 20 4 3 22 22 C 1.53000 * 109.46869 * 300.00010 * 21 20 4 23 23 C 1.52999 * 109.47612 * 60.00211 * 22 21 20 24 24 C 1.53000 * 109.46869 * 186.23085 * 4 3 2 25 25 H 4.44652 * 5.63273 * 179.97438 * 4 1 2 26 26 H 1.08999 * 109.46613 * 219.10336 * 3 2 1 27 27 H 1.09000 * 109.46987 * 99.10755 * 3 2 1 28 28 H 1.09005 * 109.47492 * 270.99335 * 8 7 5 29 29 H 1.09001 * 109.47012 * 30.99240 * 8 7 5 30 30 H 1.09000 * 109.46996 * 150.99319 * 8 7 5 31 31 H 1.09000 * 109.47118 * 184.65396 * 11 9 7 32 32 H 1.09001 * 109.47136 * 304.64626 * 11 9 7 33 33 H 1.09004 * 109.47371 * 64.65149 * 11 9 7 34 34 H 0.96999 * 120.00032 * 180.02562 * 15 14 12 35 35 H 1.09007 * 109.47014 * 299.99945 * 20 4 3 36 36 H 1.08996 * 109.47188 * 59.99614 * 20 4 3 37 37 H 1.08997 * 109.47166 * 180.02562 * 21 20 4 38 38 H 1.08996 * 109.47420 * 59.99756 * 21 20 4 39 39 H 1.09000 * 109.47254 * 299.99702 * 22 21 20 40 40 H 1.09005 * 109.47129 * 180.02562 * 22 21 20 41 41 H 1.08994 * 109.47249 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.47226 * 59.99474 * 23 22 21 43 43 H 1.09000 * 109.47254 * 299.99702 * 24 4 3 44 44 H 1.08996 * 109.47497 * 59.99925 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.3467 0.5145 5 6 2.5325 -1.6422 1.8539 6 8 1.6509 -2.4703 1.9427 7 7 2.9542 -0.9862 2.9532 8 6 3.9351 0.0948 2.8300 9 6 2.4316 -1.3545 4.2714 10 1 1.7188 -2.1721 4.1642 11 6 1.7314 -0.1469 4.8978 12 6 3.5687 -1.7917 5.1584 13 1 4.5720 -1.8470 4.7624 14 6 3.3283 -2.1213 6.4754 15 7 2.0942 -2.1640 6.9279 16 14 4.7555 -2.5069 7.6173 17 1 5.2945 -1.2429 8.1804 18 1 4.2836 -3.3794 8.7223 19 1 5.8231 -3.2049 6.8569 20 6 2.7790 -2.4480 -0.4783 21 6 3.2891 -3.7955 0.0365 22 6 4.8110 -3.7419 0.1842 23 6 5.1887 -2.6407 1.1770 24 6 4.6786 -1.2927 0.6617 25 1 -1.0498 -0.0003 0.0003 26 1 3.0089 0.7983 0.6482 27 1 3.0092 0.1635 -1.0147 28 1 4.9416 -0.3186 2.8945 29 1 3.8079 0.5930 1.8689 30 1 3.7856 0.8145 3.6349 31 1 1.4152 -0.3955 5.9109 32 1 2.4207 0.6969 4.9292 33 1 0.8595 0.1182 4.2998 34 1 1.9251 -2.3955 7.8545 35 1 1.6947 -2.4864 -0.5832 36 1 3.2303 -2.2343 -1.4471 37 1 3.0204 -4.5800 -0.6709 38 1 2.8373 -4.0090 1.0052 39 1 5.2628 -3.5285 -0.7845 40 1 5.1745 -4.7021 0.5506 41 1 6.2729 -2.6023 1.2818 42 1 4.7369 -2.8542 2.1457 43 1 5.1300 -1.0791 -0.3071 44 1 4.9477 -0.5082 1.3689 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121281587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:43 Heat of formation + Delta-G solvation = 20.615256 kcal Electronic energy + Delta-G solvation = -23575.530338 eV Core-core repulsion = 20494.639035 eV Total energy + Delta-G solvation = -3080.891303 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.63450 -36.92584 -35.38371 -34.34380 -32.94404 -31.24334 -30.42041 -28.94032 -26.66741 -26.41279 -25.18919 -22.97883 -22.32848 -20.93278 -19.73175 -18.05308 -17.81052 -16.29364 -15.75680 -15.61515 -15.06079 -14.71317 -14.57107 -14.00895 -13.75189 -13.54447 -13.26831 -12.80239 -12.74296 -12.39183 -11.99882 -11.85705 -11.69274 -11.64984 -11.45184 -11.15458 -11.02512 -10.88546 -10.67114 -10.56374 -10.35121 -10.26105 -10.19326 -10.11931 -9.91003 -9.72954 -9.46424 -9.14590 -8.64115 -8.34926 -7.47107 -6.05283 -4.12268 3.06938 3.10912 3.26879 3.33849 3.35568 3.53807 4.02271 4.41036 4.56075 4.77229 4.97223 5.03774 5.24072 5.27714 5.35569 5.43227 5.52351 5.64336 5.68268 5.72632 5.78055 5.87755 6.00339 6.05008 6.10216 6.12081 6.20963 6.23439 6.34664 6.44503 6.53049 6.58773 6.62402 6.79493 6.85161 6.88855 7.10650 7.51748 7.59376 7.75419 7.91413 8.06676 8.24574 8.63145 8.87504 9.18043 9.54077 10.99843 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018711 B = 0.006831 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.111463 B = 4097.958696 C = 4798.219058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.184 4.184 3 C -0.005 4.005 4 C -0.072 4.072 5 C 0.525 3.475 6 O -0.546 6.546 7 N -0.591 5.591 8 C 0.074 3.926 9 C 0.260 3.740 10 H 0.061 0.939 11 C -0.149 4.149 12 C -0.523 4.523 13 H 0.059 0.941 14 C 0.064 3.936 15 N -0.887 5.887 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.088 4.088 21 C -0.128 4.128 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.137 4.137 25 H 0.213 0.787 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.028 0.972 33 H 0.011 0.989 34 H 0.263 0.737 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.617 4.491 -13.774 15.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.184 4.184 3 C -0.042 4.042 4 C -0.075 4.075 5 C 0.311 3.689 6 O -0.425 6.425 7 N -0.322 5.322 8 C -0.069 4.069 9 C 0.160 3.840 10 H 0.078 0.922 11 C -0.207 4.207 12 C -0.561 4.561 13 H 0.077 0.923 14 C -0.138 4.138 15 N -0.525 5.525 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.125 4.125 21 C -0.165 4.165 22 C -0.153 4.153 23 C -0.162 4.162 24 C -0.174 4.174 25 H 0.230 0.770 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.047 0.953 33 H 0.030 0.970 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.049 4.009 -13.516 14.668 hybrid contribution 0.620 -0.136 0.752 0.984 sum 4.668 3.872 -12.764 14.131 Atomic orbital electron populations 1.24750 0.95853 1.00456 1.00813 1.22794 0.94309 1.00649 1.00635 1.18941 0.85568 0.97246 1.02429 1.20848 0.96327 0.95388 0.94982 1.19992 0.82547 0.81335 0.85002 1.90599 1.31136 1.34797 1.85919 1.48093 1.41810 1.33911 1.08351 1.22065 0.92781 0.91038 1.01064 1.18859 0.94446 0.94143 0.76541 0.92151 1.22086 0.97194 0.97853 1.03608 1.21320 0.94259 1.45475 0.95088 0.92290 1.24889 0.95657 0.95181 0.98043 1.69900 1.18518 1.48115 1.15966 0.86562 0.82476 0.78219 0.80449 1.20573 1.21230 1.19998 1.21316 1.01442 0.93641 0.96148 1.21650 0.95326 0.96469 1.03051 1.21518 0.96378 0.98605 0.98816 1.21562 1.00299 0.94201 1.00107 1.22279 0.92615 0.99938 1.02551 0.77001 0.88639 0.89109 0.92630 0.92045 0.91189 0.88814 0.95319 0.96981 0.92743 0.91290 0.92233 0.92664 0.89813 0.92714 0.92447 0.92105 0.90621 0.91660 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.09 19.25 29.55 0.57 -2.52 16 2 C -0.18 -2.91 11.40 -37.12 -0.42 -3.33 16 3 C -0.01 -0.07 4.62 -29.52 -0.14 -0.21 16 4 C -0.07 -1.10 0.28 -155.66 -0.04 -1.15 16 5 C 0.52 10.73 3.72 -10.99 -0.04 10.69 16 6 O -0.55 -13.41 13.69 5.55 0.08 -13.33 16 7 N -0.59 -12.41 2.69 -175.27 -0.47 -12.88 16 8 C 0.07 1.22 7.78 59.84 0.47 1.68 16 9 C 0.26 6.65 2.65 -69.08 -0.18 6.47 16 10 H 0.06 1.81 6.91 -51.93 -0.36 1.46 16 11 C -0.15 -3.63 9.07 37.16 0.34 -3.29 16 12 C -0.52 -13.98 8.38 -34.44 -0.29 -14.27 16 13 H 0.06 1.55 7.71 -52.49 -0.40 1.14 16 14 C 0.06 1.75 5.21 -17.82 -0.09 1.66 16 15 N -0.89 -25.19 11.31 55.43 0.63 -24.57 16 16 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 C -0.09 -1.31 4.17 -26.73 -0.11 -1.42 16 21 C -0.13 -1.99 5.64 -26.73 -0.15 -2.14 16 22 C -0.12 -1.59 5.92 -26.73 -0.16 -1.75 16 23 C -0.12 -1.83 5.70 -26.70 -0.15 -1.98 16 24 C -0.14 -1.79 4.17 -26.70 -0.11 -1.91 16 25 H 0.21 2.55 7.80 -54.10 -0.42 2.13 16 26 H 0.10 1.17 5.30 -51.93 -0.28 0.90 16 27 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.87 6.73 -51.93 -0.35 0.52 16 29 H 0.06 0.82 3.43 -51.93 -0.18 0.64 16 30 H 0.07 1.19 6.35 -51.93 -0.33 0.86 16 31 H 0.09 2.50 5.91 -51.93 -0.31 2.19 16 32 H 0.03 0.63 6.49 -51.93 -0.34 0.29 16 33 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.07 1.16 7.23 -51.93 -0.38 0.78 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.64 6.06 -51.93 -0.31 1.32 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 1.42 7.17 -51.93 -0.37 1.04 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 1.21 3.35 -51.93 -0.17 1.04 16 LS Contribution 330.41 15.07 4.98 4.98 Total: -1.00 -31.29 330.41 -7.05 -38.34 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.71 Total: 4.99 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -0.52 Total: -13.46 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.16 Total: -37.45 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.29 -7.05 -38.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121281587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.955 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds