Wall clock time and date at job start Mon Mar 30 2020 01:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47279 * 339.10495 * 3 2 1 5 5 C 1.50698 * 109.47124 * 306.22932 * 4 3 2 6 6 O 1.21283 * 119.99827 * 105.38235 * 5 4 3 7 7 N 1.34778 * 119.99851 * 285.38275 * 5 4 3 8 8 C 1.46491 * 120.00175 * 5.32014 * 7 5 4 9 9 C 1.46501 * 119.99608 * 185.32446 * 7 5 4 10 10 H 1.08999 * 109.47250 * 359.97438 * 9 7 5 11 11 C 1.53003 * 109.46709 * 239.99859 * 9 7 5 12 12 C 1.50700 * 109.47312 * 120.00231 * 9 7 5 13 13 H 1.08000 * 119.99671 * 356.63208 * 12 9 7 14 14 C 1.37875 * 119.99972 * 176.64243 * 12 9 7 15 15 N 1.31514 * 120.00408 * 5.76229 * 14 12 9 16 16 Si 1.86805 * 119.99973 * 185.77310 * 14 12 9 17 17 H 1.48499 * 109.47421 * 84.99156 * 16 14 12 18 18 H 1.48494 * 109.47170 * 204.99516 * 16 14 12 19 19 H 1.48502 * 109.46822 * 324.99427 * 16 14 12 20 20 C 1.53002 * 109.47091 * 66.23075 * 4 3 2 21 21 C 1.52998 * 109.47091 * 180.02562 * 20 4 3 22 22 C 1.53000 * 109.46869 * 300.00010 * 21 20 4 23 23 C 1.52999 * 109.47612 * 60.00211 * 22 21 20 24 24 C 1.53000 * 109.46869 * 186.23085 * 4 3 2 25 25 H 4.44652 * 5.63273 * 179.97438 * 4 1 2 26 26 H 1.08999 * 109.46613 * 219.10336 * 3 2 1 27 27 H 1.09000 * 109.46987 * 99.10755 * 3 2 1 28 28 H 1.09005 * 109.47492 * 270.99335 * 8 7 5 29 29 H 1.09001 * 109.47012 * 30.99240 * 8 7 5 30 30 H 1.09000 * 109.46996 * 150.99319 * 8 7 5 31 31 H 1.09000 * 109.47118 * 184.65396 * 11 9 7 32 32 H 1.09001 * 109.47136 * 304.64626 * 11 9 7 33 33 H 1.09004 * 109.47371 * 64.65149 * 11 9 7 34 34 H 0.96999 * 120.00032 * 180.02562 * 15 14 12 35 35 H 1.09007 * 109.47014 * 299.99945 * 20 4 3 36 36 H 1.08996 * 109.47188 * 59.99614 * 20 4 3 37 37 H 1.08997 * 109.47166 * 180.02562 * 21 20 4 38 38 H 1.08996 * 109.47420 * 59.99756 * 21 20 4 39 39 H 1.09000 * 109.47254 * 299.99702 * 22 21 20 40 40 H 1.09005 * 109.47129 * 180.02562 * 22 21 20 41 41 H 1.08994 * 109.47249 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.47226 * 59.99474 * 23 22 21 43 43 H 1.09000 * 109.47254 * 299.99702 * 24 4 3 44 44 H 1.08996 * 109.47497 * 59.99925 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.3467 0.5145 5 6 2.5325 -1.6422 1.8539 6 8 1.6509 -2.4703 1.9427 7 7 2.9542 -0.9862 2.9532 8 6 3.9351 0.0948 2.8300 9 6 2.4316 -1.3545 4.2714 10 1 1.7188 -2.1721 4.1642 11 6 1.7314 -0.1469 4.8978 12 6 3.5687 -1.7917 5.1584 13 1 4.5720 -1.8470 4.7624 14 6 3.3283 -2.1213 6.4754 15 7 2.0942 -2.1640 6.9279 16 14 4.7555 -2.5069 7.6173 17 1 5.2945 -1.2429 8.1804 18 1 4.2836 -3.3794 8.7223 19 1 5.8231 -3.2049 6.8569 20 6 2.7790 -2.4480 -0.4783 21 6 3.2891 -3.7955 0.0365 22 6 4.8110 -3.7419 0.1842 23 6 5.1887 -2.6407 1.1770 24 6 4.6786 -1.2927 0.6617 25 1 -1.0498 -0.0003 0.0003 26 1 3.0089 0.7983 0.6482 27 1 3.0092 0.1635 -1.0147 28 1 4.9416 -0.3186 2.8945 29 1 3.8079 0.5930 1.8689 30 1 3.7856 0.8145 3.6349 31 1 1.4152 -0.3955 5.9109 32 1 2.4207 0.6969 4.9292 33 1 0.8595 0.1182 4.2998 34 1 1.9251 -2.3955 7.8545 35 1 1.6947 -2.4864 -0.5832 36 1 3.2303 -2.2343 -1.4471 37 1 3.0204 -4.5800 -0.6709 38 1 2.8373 -4.0090 1.0052 39 1 5.2628 -3.5285 -0.7845 40 1 5.1745 -4.7021 0.5506 41 1 6.2729 -2.6023 1.2818 42 1 4.7369 -2.8542 2.1457 43 1 5.1300 -1.0791 -0.3071 44 1 4.9477 -0.5082 1.3689 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121281587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:42 Heat of formation + Delta-G solvation = 2.260779 kcal Electronic energy + Delta-G solvation = -23576.326247 eV Core-core repulsion = 20494.639035 eV Total energy + Delta-G solvation = -3081.687212 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.01154 -38.40863 -37.13278 -35.53980 -34.77619 -32.62550 -31.67116 -30.67590 -27.88265 -27.72925 -27.29175 -24.53424 -23.49875 -22.29118 -21.30752 -19.47753 -19.03763 -18.31543 -17.40799 -16.94222 -16.61157 -16.10874 -16.08229 -15.27913 -15.04551 -14.97855 -14.62694 -14.47994 -14.09571 -13.78936 -13.54007 -13.23450 -13.10201 -13.04800 -12.88003 -12.79523 -12.73079 -12.53887 -12.36692 -12.15658 -12.12702 -11.83873 -11.51993 -11.44794 -11.20194 -11.04913 -10.86953 -10.61958 -10.51224 -10.14762 -9.19236 -8.13923 -6.29835 1.40529 1.41595 1.51083 1.84862 1.92945 2.04080 2.35678 2.55449 3.13232 3.46801 3.55938 3.82801 3.90229 4.08058 4.20601 4.28325 4.38198 4.49885 4.55972 4.63091 4.67851 4.73599 4.77307 4.82208 4.87307 4.91900 4.95210 5.03308 5.05767 5.09606 5.15693 5.19257 5.33002 5.38140 5.44512 5.46241 5.49309 5.60373 5.67797 5.72951 6.07955 6.18768 6.76018 6.78798 6.96785 7.36243 7.62135 8.90338 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018711 B = 0.006831 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.111463 B = 4097.958696 C = 4798.219058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.205 4.205 3 C -0.006 4.006 4 C -0.063 4.063 5 C 0.515 3.485 6 O -0.602 6.602 7 N -0.598 5.598 8 C 0.067 3.933 9 C 0.267 3.733 10 H -0.002 1.002 11 C -0.135 4.135 12 C -0.531 4.531 13 H 0.062 0.938 14 C 0.013 3.987 15 N -0.920 5.920 16 Si 0.963 3.037 17 H -0.265 1.265 18 H -0.288 1.288 19 H -0.270 1.270 20 C -0.085 4.085 21 C -0.129 4.129 22 C -0.110 4.110 23 C -0.126 4.126 24 C -0.133 4.133 25 H 0.230 0.770 26 H 0.110 0.890 27 H 0.136 0.864 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.010 0.990 34 H 0.263 0.737 35 H 0.040 0.960 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.028 0.972 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.083 0.917 42 H 0.022 0.978 43 H 0.113 0.887 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.868 6.257 -16.059 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.205 4.205 3 C -0.042 4.042 4 C -0.066 4.066 5 C 0.305 3.695 6 O -0.484 6.484 7 N -0.328 5.328 8 C -0.074 4.074 9 C 0.164 3.836 10 H 0.016 0.984 11 C -0.193 4.193 12 C -0.569 4.569 13 H 0.080 0.920 14 C -0.186 4.186 15 N -0.559 5.559 16 Si 0.788 3.212 17 H -0.190 1.190 18 H -0.214 1.214 19 H -0.195 1.195 20 C -0.123 4.123 21 C -0.167 4.167 22 C -0.148 4.148 23 C -0.164 4.164 24 C -0.169 4.169 25 H 0.247 0.753 26 H 0.128 0.872 27 H 0.154 0.846 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.121 0.879 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.040 0.960 43 H 0.131 0.869 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.328 5.808 -15.820 18.377 hybrid contribution -0.479 -0.764 1.449 1.707 sum 6.849 5.044 -14.371 16.700 Atomic orbital electron populations 1.25508 0.97097 1.00465 1.01168 1.23598 0.95678 1.00669 1.00511 1.19182 0.83941 0.95886 1.05197 1.20868 0.97751 0.96806 0.91194 1.21080 0.81704 0.79975 0.86747 1.90573 1.33769 1.37068 1.86967 1.48057 1.42649 1.35218 1.06871 1.22393 0.92125 0.89708 1.03164 1.18382 0.93284 0.92753 0.79150 0.98374 1.21881 0.97486 0.98072 1.01870 1.21552 0.94473 1.45413 0.95501 0.92009 1.25758 0.98151 0.94995 0.99698 1.70058 1.20643 1.48963 1.16251 0.85493 0.79161 0.78430 0.78091 1.18987 1.21431 1.19484 1.21343 1.00057 0.92967 0.97910 1.21614 0.96866 0.97731 1.00479 1.21506 0.94594 0.98257 1.00395 1.21566 1.01296 0.95713 0.97796 1.22338 0.90390 0.98924 1.05253 0.75347 0.87234 0.84585 0.91356 0.88031 0.91682 0.91379 0.93110 0.97039 0.92779 0.94106 0.87857 0.91435 0.95284 0.88918 0.92999 0.89850 0.95953 0.86881 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -6.89 19.25 74.32 1.43 -5.46 16 2 C -0.20 -6.19 11.40 31.12 0.35 -5.83 16 3 C -0.01 -0.14 4.62 28.79 0.13 -0.01 16 4 C -0.06 -1.78 0.28 -52.93 -0.01 -1.79 16 5 C 0.52 21.58 3.72 87.66 0.33 21.91 16 6 O -0.60 -31.79 13.69 -3.04 -0.04 -31.83 16 7 N -0.60 -25.52 2.69 -826.80 -2.22 -27.74 16 8 C 0.07 2.09 7.78 127.77 0.99 3.09 16 9 C 0.27 14.31 2.65 44.25 0.12 14.43 16 10 H 0.00 -0.11 6.91 -2.39 -0.02 -0.13 16 11 C -0.13 -6.78 9.07 71.98 0.65 -6.13 16 12 C -0.53 -29.22 8.38 25.60 0.21 -29.00 16 13 H 0.06 3.28 7.71 -2.91 -0.02 3.26 16 14 C 0.01 0.73 5.21 84.65 0.44 1.17 16 15 N -0.92 -54.39 11.31 21.45 0.24 -54.14 16 16 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 17 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 18 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 C -0.09 -2.38 4.17 30.59 0.13 -2.25 16 21 C -0.13 -4.00 5.64 30.59 0.17 -3.83 16 22 C -0.11 -2.76 5.92 30.59 0.18 -2.58 16 23 C -0.13 -3.42 5.70 30.61 0.17 -3.24 16 24 C -0.13 -2.88 4.17 30.61 0.13 -2.75 16 25 H 0.23 5.60 7.80 -4.43 -0.03 5.56 16 26 H 0.11 2.17 5.30 -2.39 -0.01 2.15 16 27 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.07 1.96 6.73 -2.38 -0.02 1.94 16 29 H 0.10 2.30 3.43 -2.39 -0.01 2.29 16 30 H 0.06 2.08 6.35 -2.39 -0.02 2.06 16 31 H 0.07 3.79 5.91 -2.39 -0.01 3.78 16 32 H 0.05 2.27 6.49 -2.39 -0.02 2.25 16 33 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 35 H 0.04 1.36 7.23 -2.38 -0.02 1.34 16 36 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.03 1.21 6.06 -2.39 -0.01 1.19 16 39 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.02 0.83 7.17 -2.39 -0.02 0.81 16 43 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.10 2.12 3.35 -2.39 -0.01 2.11 16 Total: -1.00 -75.80 330.41 6.42 -69.38 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.98 Total: 21.17 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 5.43 Total: -22.29 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -1.98 Total: -81.88 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.04 Total: -31.83 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -75.80 6.42 -69.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121281587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.642 kcal (2) G-P(sol) polarization free energy of solvation -75.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds