Wall clock time and date at job start Mon Mar 30 2020 02:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34846 * 125.88907 * 2 1 4 4 C 1.40895 * 107.41934 * 180.26281 * 3 2 1 5 5 C 1.50695 * 126.29778 * 180.02562 * 4 3 2 6 6 C 1.34858 * 107.41276 * 0.02562 * 4 3 2 7 7 C 1.50694 * 125.88862 * 180.02562 * 6 4 3 8 8 N 1.46897 * 109.47208 * 285.07213 * 7 6 4 9 9 C 1.46962 * 110.99944 * 288.20140 * 8 7 6 10 10 C 1.53046 * 109.36297 * 176.81032 * 9 8 7 11 11 N 1.46958 * 109.36666 * 58.40123 * 10 9 8 12 12 C 1.46907 * 110.99914 * 176.80587 * 11 10 9 13 13 C 1.50689 * 109.47339 * 293.79943 * 12 11 10 14 14 H 1.08000 * 120.00703 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00085 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00298 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99639 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47057 * 89.99692 * 17 15 13 19 19 H 1.48504 * 109.46937 * 209.99511 * 17 15 13 20 20 H 1.48496 * 109.47314 * 329.99597 * 17 15 13 21 21 C 1.46955 * 110.88236 * 300.68040 * 11 10 9 22 22 C 1.46958 * 111.00268 * 164.40080 * 8 7 6 23 23 N 1.36336 * 108.22057 * 359.97438 * 6 4 3 24 24 H 0.97003 * 125.63810 * 179.97438 * 23 6 4 25 25 H 1.09005 * 109.47441 * 269.68951 * 1 2 3 26 26 H 1.09003 * 109.46939 * 29.69071 * 1 2 3 27 27 H 1.08995 * 109.47274 * 149.69259 * 1 2 3 28 28 H 1.08004 * 126.29391 * 0.24558 * 3 2 1 29 29 H 1.09002 * 109.47126 * 264.81208 * 5 4 3 30 30 H 1.09010 * 109.46666 * 24.80694 * 5 4 3 31 31 H 1.08993 * 109.47460 * 144.80457 * 5 4 3 32 32 H 1.09006 * 109.47411 * 45.07387 * 7 6 4 33 33 H 1.08999 * 109.47047 * 165.07271 * 7 6 4 34 34 H 1.08997 * 109.48593 * 296.77877 * 9 8 7 35 35 H 1.08999 * 109.48822 * 56.84171 * 9 8 7 36 36 H 1.08993 * 109.49227 * 298.43263 * 10 9 8 37 37 H 1.09003 * 109.50724 * 178.37989 * 10 9 8 38 38 H 1.09001 * 109.46621 * 53.80573 * 12 11 10 39 39 H 1.09005 * 109.46312 * 173.79692 * 12 11 10 40 40 H 0.97000 * 119.99847 * 180.02562 * 16 15 13 41 41 H 1.09005 * 109.48582 * 299.35227 * 21 11 10 42 42 H 1.08999 * 109.49055 * 179.28763 * 21 11 10 43 43 H 1.09000 * 109.49100 * 303.15773 * 22 8 7 44 44 H 1.09001 * 109.48747 * 63.22150 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2975 1.0925 0.0000 4 6 3.6338 0.6461 -0.0062 5 6 4.8647 1.5155 -0.0079 6 6 3.6090 -0.7022 -0.0103 7 6 4.8133 -1.6080 -0.0169 8 7 5.4169 -1.6103 -1.3561 9 6 4.5748 -2.3430 -2.3120 10 6 5.1967 -2.2546 -3.7077 11 7 6.5557 -2.8127 -3.6719 12 6 7.1592 -2.8151 -5.0112 13 6 6.4060 -3.7709 -5.9000 14 1 5.5629 -4.3213 -5.5093 15 6 6.7925 -3.9420 -7.2124 16 7 6.1348 -4.7758 -7.9882 17 14 8.2503 -2.9895 -7.8885 18 1 9.4938 -3.7740 -7.6800 19 1 8.0541 -2.7495 -9.3408 20 1 8.3617 -1.6880 -7.1823 21 6 7.3978 -2.0801 -2.7159 22 6 6.7759 -2.1684 -1.3203 23 7 2.3063 -1.1046 -0.0063 24 1 1.9989 -2.0246 -0.0083 25 1 -0.3634 -0.0056 1.0277 26 1 -0.3633 0.8928 -0.5090 27 1 -0.3633 -0.8872 -0.5186 28 1 1.9670 2.1207 0.0037 29 1 5.2115 1.6524 -1.0322 30 1 4.6248 2.4857 0.4272 31 1 5.6481 1.0373 0.5801 32 1 5.5422 -1.2486 0.7096 33 1 4.5077 -2.6208 0.2457 34 1 4.5064 -3.3880 -2.0099 35 1 3.5776 -1.9032 -2.3297 36 1 5.2401 -1.2116 -4.0211 37 1 4.5893 -2.8213 -4.4134 38 1 7.1107 -1.8113 -5.4334 39 1 8.2006 -3.1292 -4.9398 40 1 6.4070 -4.8964 -8.9114 41 1 7.4662 -1.0350 -3.0181 42 1 8.3950 -2.5199 -2.6983 43 1 7.3835 -1.6015 -0.6149 44 1 6.7325 -3.2115 -1.0069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137327673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:20 Heat of formation + Delta-G solvation = 51.014208 kcal Electronic energy + Delta-G solvation = -21884.468798 eV Core-core repulsion = 18837.188444 eV Total energy + Delta-G solvation = -3047.280354 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.27987 -38.68783 -35.31364 -32.86758 -32.38354 -31.55937 -30.45885 -29.29773 -27.64163 -26.92546 -24.59629 -23.22970 -22.58393 -21.04255 -20.31644 -19.23416 -18.82660 -16.80893 -16.75134 -15.91584 -15.02969 -14.56169 -14.37709 -14.35680 -14.23400 -13.64190 -13.51749 -13.41781 -13.09568 -12.96158 -12.79579 -12.47478 -12.23483 -12.21863 -12.05868 -11.91314 -11.70520 -11.38539 -11.09302 -10.93944 -10.80733 -10.57118 -10.38915 -10.06048 -9.81891 -9.26177 -8.56624 -8.56055 -8.17937 -7.72952 -7.34718 -6.05063 -4.02317 2.21121 2.98590 3.26561 3.29239 3.36663 3.39541 4.20983 4.42778 4.78615 4.86440 4.89362 5.05917 5.15720 5.27474 5.31553 5.36489 5.39145 5.45333 5.51931 5.57608 5.70976 5.74110 5.78088 5.83944 5.85353 5.96454 6.01412 6.12193 6.23789 6.27216 6.33291 6.51156 6.52654 6.65438 6.85127 6.98845 7.09851 7.15685 7.25784 7.29978 7.60644 7.63522 7.92381 8.06500 8.66557 9.02546 9.56945 11.08052 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024481 B = 0.003867 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.447499 B = 7238.324154 C = 7693.981222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.012 3.988 3 C -0.198 4.198 4 C -0.141 4.141 5 C -0.071 4.071 6 C 0.023 3.977 7 C 0.127 3.873 8 N -0.530 5.530 9 C 0.062 3.938 10 C 0.069 3.931 11 N -0.530 5.530 12 C 0.163 3.837 13 C -0.509 4.509 14 H 0.079 0.921 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.267 1.267 21 C 0.054 3.946 22 C 0.062 3.938 23 N -0.555 5.555 24 H 0.408 0.592 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.130 0.870 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.034 0.966 34 H 0.036 0.964 35 H 0.068 0.932 36 H 0.030 0.970 37 H 0.090 0.910 38 H -0.011 1.011 39 H 0.024 0.976 40 H 0.263 0.737 41 H 0.032 0.968 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.385 9.799 18.778 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 C -0.223 4.223 4 C -0.148 4.148 5 C -0.128 4.128 6 C -0.089 4.089 7 C -0.002 4.002 8 N -0.255 5.255 9 C -0.066 4.066 10 C -0.060 4.060 11 N -0.254 5.254 12 C 0.036 3.964 13 C -0.547 4.547 14 H 0.097 0.903 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.702 3.298 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.192 1.192 21 C -0.075 4.075 22 C -0.066 4.066 23 N -0.151 5.151 24 H 0.244 0.756 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.148 0.852 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.108 0.892 38 H 0.007 0.993 39 H 0.042 0.958 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.418 9.573 18.579 21.864 hybrid contribution 0.567 -0.036 -0.582 0.813 sum -5.851 9.537 17.997 21.192 Atomic orbital electron populations 1.20271 0.88477 1.03073 1.02156 1.20233 0.93063 0.86389 1.10330 1.20562 0.92333 0.97319 1.12101 1.19208 0.94805 0.92181 1.08582 1.20036 0.93940 0.97137 1.01718 1.19876 0.83876 0.94226 1.10879 1.20394 0.92485 0.95512 0.91778 1.62132 1.02548 1.54735 1.06075 1.22207 0.96009 0.95458 0.92952 1.21990 0.91333 0.97868 0.94774 1.62115 1.01711 1.51911 1.09707 1.20149 0.95282 0.95781 0.85149 1.21025 1.15855 1.23558 0.94291 0.90280 1.24899 0.96568 0.95049 0.96810 1.69894 1.40673 1.36354 1.07107 0.86857 0.83491 0.81072 0.78331 1.20163 1.21204 1.19220 1.22107 0.96798 0.96687 0.91890 1.22149 0.89051 0.97706 0.97700 1.41863 1.05709 1.07992 1.59524 0.75561 0.91484 0.90345 0.92003 0.85204 0.91771 0.92971 0.92671 0.89250 0.94738 0.94549 0.91383 0.95216 0.89191 0.99295 0.95830 0.92682 0.94982 0.90968 0.90952 0.94249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.42 36.01 0.38 -0.26 16 2 C 0.01 0.14 7.16 -81.79 -0.59 -0.45 16 3 C -0.20 -2.44 10.71 -39.78 -0.43 -2.87 16 4 C -0.14 -1.84 6.14 -104.82 -0.64 -2.48 16 5 C -0.07 -0.82 10.12 36.00 0.36 -0.46 16 6 C 0.02 0.29 5.78 -81.79 -0.47 -0.18 16 7 C 0.13 1.52 5.16 -4.98 -0.03 1.50 16 8 N -0.53 -7.68 4.66 -235.91 -1.10 -8.78 16 9 C 0.06 1.00 5.44 -3.77 -0.02 0.98 16 10 C 0.07 1.38 5.43 -3.77 -0.02 1.36 16 11 N -0.53 -11.29 4.70 -235.91 -1.11 -12.40 16 12 C 0.16 4.01 3.79 -4.98 -0.02 3.99 16 13 C -0.51 -14.57 9.03 -34.44 -0.31 -14.88 16 14 H 0.08 2.46 7.37 -52.49 -0.39 2.07 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 17 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 21 C 0.05 0.94 5.61 -3.77 -0.02 0.92 16 22 C 0.06 0.89 5.59 -3.77 -0.02 0.87 16 23 N -0.55 -6.16 6.07 -5.44 -0.03 -6.19 16 24 H 0.41 3.66 8.96 -40.82 -0.37 3.29 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.05 0.59 7.68 -51.93 -0.40 0.20 16 32 H 0.09 0.96 7.54 -51.93 -0.39 0.57 16 33 H 0.03 0.39 8.06 -51.93 -0.42 -0.02 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.07 7.41 -51.93 -0.38 0.69 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.99 6.79 -51.93 -0.35 1.64 16 38 H -0.01 -0.27 7.18 -51.93 -0.37 -0.64 16 39 H 0.02 0.58 7.45 -51.93 -0.39 0.19 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 43 H 0.07 0.86 8.02 -51.93 -0.42 0.45 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 347.64 15.07 5.24 5.24 Total: -1.00 -31.83 347.64 -10.51 -42.34 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.69 Total: -0.21 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -1.92 Total: -10.07 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -1.47 Total: -54.32 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.83 -10.51 -42.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137327673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.356 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds