Wall clock time and date at job start Mon Mar 30 2020 02:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.46830 * 2 1 4 4 C 1.35903 * 116.99409 * 179.97438 * 3 2 1 5 5 C 1.38756 * 120.05935 * 0.02640 * 4 3 2 6 6 C 1.38117 * 119.94473 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.05760 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.94759 * 180.02562 * 7 6 5 9 9 C 1.38248 * 120.10981 * 359.74607 * 7 6 5 10 10 C 1.38164 * 120.05317 * 0.50815 * 9 7 6 11 11 C 1.50704 * 120.02794 * 179.77063 * 10 9 7 12 12 N 1.46901 * 109.47185 * 259.72945 * 11 10 9 13 13 C 1.46895 * 111.00524 * 66.04080 * 12 11 10 14 14 C 1.53001 * 109.46953 * 63.27040 * 13 12 11 15 15 C 1.46900 * 110.99979 * 189.99906 * 12 11 10 16 16 C 1.50701 * 109.46953 * 169.58111 * 15 12 11 17 17 H 1.08003 * 120.00217 * 354.97051 * 16 15 12 18 18 C 1.37880 * 119.99757 * 174.96528 * 16 15 12 19 19 N 1.31513 * 120.00046 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99684 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47402 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47508 * 120.00015 * 20 18 16 23 23 H 1.48510 * 109.46914 * 239.99912 * 20 18 16 24 24 H 1.08999 * 109.47296 * 300.00227 * 1 2 3 25 25 H 1.09004 * 109.46934 * 60.00402 * 1 2 3 26 26 H 1.08998 * 109.47131 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46855 * 240.00363 * 2 1 3 28 28 H 1.08998 * 109.46665 * 119.99930 * 2 1 3 29 29 H 1.08003 * 120.02338 * 359.97438 * 5 4 3 30 30 H 1.07999 * 119.97435 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47530 * 89.99509 * 8 7 6 32 32 H 1.08998 * 109.47184 * 210.00103 * 8 7 6 33 33 H 1.09000 * 109.46828 * 329.99310 * 8 7 6 34 34 H 1.08000 * 119.97211 * 180.26032 * 9 7 6 35 35 H 1.08992 * 109.47439 * 139.72093 * 11 10 9 36 36 H 1.09003 * 109.47258 * 19.72216 * 11 10 9 37 37 H 1.09001 * 109.47521 * 183.27651 * 13 12 11 38 38 H 1.09000 * 109.46967 * 303.27700 * 13 12 11 39 39 H 1.09004 * 109.47041 * 180.61017 * 14 13 12 40 40 H 1.09001 * 109.47437 * 300.61454 * 14 13 12 41 41 H 1.09002 * 109.46478 * 60.61629 * 14 13 12 42 42 H 1.08997 * 109.47012 * 289.58094 * 15 12 11 43 43 H 1.09003 * 109.47081 * 49.58424 * 15 12 11 44 44 H 0.97004 * 119.99543 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.2000 0.4257 0.0005 6 6 5.5689 0.6093 0.0005 7 6 6.0962 1.8877 0.0000 8 6 7.5902 2.0852 -0.0005 9 6 5.2552 2.9849 -0.0058 10 6 3.8851 2.8065 -0.0005 11 6 2.9688 4.0030 -0.0016 12 7 2.4796 4.2464 1.3620 13 6 3.5776 4.6479 2.2515 14 6 4.1648 5.9760 1.7694 15 6 1.4062 5.2493 1.3650 16 6 0.7584 5.2875 2.7252 17 1 1.0532 4.5777 3.4839 18 6 -0.2107 6.2288 3.0010 19 7 -0.5699 7.0929 2.0769 20 14 -1.0131 6.2766 4.6871 21 1 -0.4373 5.2060 5.5400 22 1 -0.7647 7.5986 5.3163 23 1 -2.4759 6.0629 4.5454 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 3.7885 -0.5729 0.0005 30 1 6.2280 -0.2461 0.0001 31 1 7.9501 2.1325 -1.0283 32 1 7.8340 3.0152 0.5130 33 1 8.0672 1.2507 0.5135 34 1 5.6694 3.9823 -0.0104 35 1 2.1232 3.8125 -0.6624 36 1 3.5147 4.8785 -0.3533 37 1 3.1985 4.7653 3.2666 38 1 4.3532 3.8822 2.2396 39 1 4.9866 6.2685 2.4231 40 1 4.5341 5.8614 0.7503 41 1 3.3918 6.7442 1.7916 42 1 1.8237 6.2291 1.1338 43 1 0.6606 4.9857 0.6148 44 1 -1.2514 7.7553 2.2712 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139603888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:15 Heat of formation + Delta-G solvation = -19.489849 kcal Electronic energy + Delta-G solvation = -22215.426038 eV Core-core repulsion = 19132.795647 eV Total energy + Delta-G solvation = -3082.630390 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.09603 -37.71961 -36.83327 -32.88352 -32.29812 -31.18327 -30.86607 -29.30803 -27.11829 -26.06841 -24.58963 -23.69505 -23.00327 -21.18982 -20.64143 -19.02040 -17.77300 -16.12203 -16.02309 -15.87170 -14.90133 -14.78197 -14.69695 -14.22903 -14.03023 -13.58274 -13.40413 -13.16300 -12.87953 -12.62617 -12.47620 -12.24313 -12.11456 -11.75517 -11.54061 -11.44352 -11.38925 -11.17756 -10.98010 -10.74500 -10.71054 -10.50266 -10.40999 -10.31198 -9.94641 -9.63338 -9.11056 -8.61712 -8.35331 -7.69887 -6.99874 -5.94843 -3.94699 1.54999 1.67072 3.34801 3.42166 3.47631 3.50958 3.93580 4.49939 4.89569 4.97540 5.05302 5.05681 5.15356 5.31809 5.34168 5.37959 5.40662 5.50178 5.57167 5.63592 5.78811 5.81714 5.90353 5.95664 5.97342 6.00425 6.11712 6.16384 6.25966 6.29068 6.39796 6.53262 6.58987 6.72605 6.80088 6.82669 7.02360 7.07890 7.44869 7.54435 7.77045 7.91661 8.22382 8.35247 8.68450 9.14116 9.68821 11.15859 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.005443 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.621193 B = 5142.604648 C = 6349.421880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.292 6.292 4 C 0.148 3.852 5 C -0.213 4.213 6 C -0.089 4.089 7 C -0.133 4.133 8 C -0.105 4.105 9 C -0.078 4.078 10 C -0.090 4.090 11 C 0.097 3.903 12 N -0.523 5.523 13 C 0.061 3.939 14 C -0.188 4.188 15 C 0.190 3.810 16 C -0.498 4.498 17 H 0.062 0.938 18 C 0.054 3.946 19 N -0.900 5.900 20 Si 0.894 3.106 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.285 1.285 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.123 0.877 35 H 0.076 0.924 36 H 0.033 0.967 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.069 0.931 42 H 0.002 0.998 43 H 0.024 0.976 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.350 -12.887 -5.808 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.205 6.205 4 C 0.102 3.898 5 C -0.232 4.232 6 C -0.108 4.108 7 C -0.133 4.133 8 C -0.162 4.162 9 C -0.097 4.097 10 C -0.092 4.092 11 C -0.031 4.031 12 N -0.246 5.246 13 C -0.067 4.067 14 C -0.247 4.247 15 C 0.065 3.935 16 C -0.536 4.536 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.541 5.541 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.211 1.211 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.141 0.859 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.019 0.981 43 H 0.042 0.958 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.835 -13.035 -5.654 17.868 hybrid contribution -0.116 0.608 0.598 0.861 sum 10.719 -12.428 -5.055 17.173 Atomic orbital electron populations 1.21749 0.92823 1.02143 1.04182 1.22704 0.96049 0.82681 1.00463 1.86268 1.18504 1.27946 1.87788 1.18779 0.82569 0.93264 0.95202 1.21148 0.94288 0.97756 1.09981 1.20662 0.94143 0.96341 0.99639 1.19690 0.95727 0.93057 1.04831 1.20663 0.91699 1.02143 1.01661 1.20779 0.91735 0.98381 0.98768 1.19346 0.93632 0.92964 1.03225 1.20852 0.96410 0.92445 0.93385 1.62326 1.09454 1.47474 1.05336 1.21949 0.92796 0.93407 0.98577 1.22396 1.01070 1.01256 0.99985 1.19777 0.87973 0.88062 0.97724 1.21193 1.19806 1.14673 0.97973 0.91999 1.24964 0.97017 0.95647 0.97012 1.69973 1.31725 1.19131 1.33233 0.86505 0.79172 0.77687 0.84435 1.19731 1.21227 1.21132 0.90860 0.91620 0.90999 0.92866 0.92485 0.85992 0.86521 0.91876 0.91861 0.92102 0.85932 0.90573 0.94881 0.90448 0.93046 0.93646 0.93822 0.91229 0.98051 0.95767 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 37.16 0.38 -1.42 16 2 C 0.06 0.73 5.46 37.16 0.20 0.93 16 3 O -0.29 -5.07 9.37 -19.44 -0.18 -5.25 16 4 C 0.15 2.47 6.66 -39.22 -0.26 2.21 16 5 C -0.21 -2.95 9.04 -39.43 -0.36 -3.31 16 6 C -0.09 -1.13 9.69 -39.61 -0.38 -1.52 16 7 C -0.13 -1.73 5.88 -104.60 -0.62 -2.35 16 8 C -0.10 -1.04 10.01 36.00 0.36 -0.68 16 9 C -0.08 -1.16 8.31 -39.60 -0.33 -1.49 16 10 C -0.09 -1.56 4.58 -104.47 -0.48 -2.03 16 11 C 0.10 1.89 4.57 -4.97 -0.02 1.87 16 12 N -0.52 -11.73 4.69 -237.52 -1.11 -12.84 16 13 C 0.06 1.25 5.64 -3.83 -0.02 1.23 16 14 C -0.19 -3.52 9.25 37.16 0.34 -3.17 16 15 C 0.19 5.02 4.50 -4.98 -0.02 5.00 16 16 C -0.50 -14.19 8.41 -34.44 -0.29 -14.48 16 17 H 0.06 1.78 7.33 -52.48 -0.38 1.39 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 20 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 28 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 29 H 0.12 1.41 6.30 -52.48 -0.33 1.08 16 30 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 34 H 0.12 1.69 7.75 -52.49 -0.41 1.29 16 35 H 0.08 1.56 7.64 -51.93 -0.40 1.16 16 36 H 0.03 0.62 5.95 -51.93 -0.31 0.31 16 37 H 0.08 1.72 6.97 -51.93 -0.36 1.36 16 38 H 0.05 0.97 6.47 -51.93 -0.34 0.63 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.04 0.75 6.03 -51.93 -0.31 0.43 16 41 H 0.07 1.50 6.31 -51.93 -0.33 1.17 16 42 H 0.00 0.05 6.01 -51.93 -0.31 -0.26 16 43 H 0.02 0.69 7.92 -51.93 -0.41 0.28 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 349.21 15.07 5.26 5.26 Total: -1.00 -31.14 349.21 -9.10 -40.25 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.20 Total: -0.36 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -1.59 Total: -17.75 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: -0.38 Total: -39.13 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.18 Total: -5.25 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.14 -9.10 -40.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139603888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.758 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds