Wall clock time and date at job start Mon Mar 30 2020 02:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.46830 * 2 1 4 4 C 1.35903 * 116.99409 * 179.97438 * 3 2 1 5 5 C 1.38756 * 120.05935 * 0.02640 * 4 3 2 6 6 C 1.38117 * 119.94473 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.05760 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.94759 * 180.02562 * 7 6 5 9 9 C 1.38248 * 120.10981 * 359.74607 * 7 6 5 10 10 C 1.38164 * 120.05317 * 0.50815 * 9 7 6 11 11 C 1.50704 * 120.02794 * 179.77063 * 10 9 7 12 12 N 1.46901 * 109.47185 * 259.72945 * 11 10 9 13 13 C 1.46895 * 111.00524 * 66.04080 * 12 11 10 14 14 C 1.53001 * 109.46953 * 63.27040 * 13 12 11 15 15 C 1.46900 * 110.99979 * 189.99906 * 12 11 10 16 16 C 1.50701 * 109.46953 * 169.58111 * 15 12 11 17 17 H 1.08003 * 120.00217 * 354.97051 * 16 15 12 18 18 C 1.37880 * 119.99757 * 174.96528 * 16 15 12 19 19 N 1.31513 * 120.00046 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99684 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47402 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47508 * 120.00015 * 20 18 16 23 23 H 1.48510 * 109.46914 * 239.99912 * 20 18 16 24 24 H 1.08999 * 109.47296 * 300.00227 * 1 2 3 25 25 H 1.09004 * 109.46934 * 60.00402 * 1 2 3 26 26 H 1.08998 * 109.47131 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46855 * 240.00363 * 2 1 3 28 28 H 1.08998 * 109.46665 * 119.99930 * 2 1 3 29 29 H 1.08003 * 120.02338 * 359.97438 * 5 4 3 30 30 H 1.07999 * 119.97435 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47530 * 89.99509 * 8 7 6 32 32 H 1.08998 * 109.47184 * 210.00103 * 8 7 6 33 33 H 1.09000 * 109.46828 * 329.99310 * 8 7 6 34 34 H 1.08000 * 119.97211 * 180.26032 * 9 7 6 35 35 H 1.08992 * 109.47439 * 139.72093 * 11 10 9 36 36 H 1.09003 * 109.47258 * 19.72216 * 11 10 9 37 37 H 1.09001 * 109.47521 * 183.27651 * 13 12 11 38 38 H 1.09000 * 109.46967 * 303.27700 * 13 12 11 39 39 H 1.09004 * 109.47041 * 180.61017 * 14 13 12 40 40 H 1.09001 * 109.47437 * 300.61454 * 14 13 12 41 41 H 1.09002 * 109.46478 * 60.61629 * 14 13 12 42 42 H 1.08997 * 109.47012 * 289.58094 * 15 12 11 43 43 H 1.09003 * 109.47081 * 49.58424 * 15 12 11 44 44 H 0.97004 * 119.99543 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.2000 0.4257 0.0005 6 6 5.5689 0.6093 0.0005 7 6 6.0962 1.8877 0.0000 8 6 7.5902 2.0852 -0.0005 9 6 5.2552 2.9849 -0.0058 10 6 3.8851 2.8065 -0.0005 11 6 2.9688 4.0030 -0.0016 12 7 2.4796 4.2464 1.3620 13 6 3.5776 4.6479 2.2515 14 6 4.1648 5.9760 1.7694 15 6 1.4062 5.2493 1.3650 16 6 0.7584 5.2875 2.7252 17 1 1.0532 4.5777 3.4839 18 6 -0.2107 6.2288 3.0010 19 7 -0.5699 7.0929 2.0769 20 14 -1.0131 6.2766 4.6871 21 1 -0.4373 5.2060 5.5400 22 1 -0.7647 7.5986 5.3163 23 1 -2.4759 6.0629 4.5454 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 3.7885 -0.5729 0.0005 30 1 6.2280 -0.2461 0.0001 31 1 7.9501 2.1325 -1.0283 32 1 7.8340 3.0152 0.5130 33 1 8.0672 1.2507 0.5135 34 1 5.6694 3.9823 -0.0104 35 1 2.1232 3.8125 -0.6624 36 1 3.5147 4.8785 -0.3533 37 1 3.1985 4.7653 3.2666 38 1 4.3532 3.8822 2.2396 39 1 4.9866 6.2685 2.4231 40 1 4.5341 5.8614 0.7503 41 1 3.3918 6.7442 1.7916 42 1 1.8237 6.2291 1.1338 43 1 0.6606 4.9857 0.6148 44 1 -1.2514 7.7553 2.2712 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139603888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:14 Heat of formation + Delta-G solvation = -38.020789 kcal Electronic energy + Delta-G solvation = -22216.229600 eV Core-core repulsion = 19132.795647 eV Total energy + Delta-G solvation = -3083.433952 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.25822 -39.07006 -38.28894 -34.83733 -33.60701 -32.38258 -31.87858 -31.03730 -28.94631 -27.10274 -26.17660 -24.97444 -24.71987 -22.39927 -21.92673 -20.58984 -18.90954 -18.34068 -17.26936 -17.03154 -16.72125 -16.33067 -15.95634 -15.81423 -15.28164 -14.75096 -14.66008 -14.48581 -14.18452 -13.95701 -13.83378 -13.43127 -13.33692 -13.14453 -13.10493 -12.76966 -12.73417 -12.65015 -12.50501 -12.39045 -12.28499 -12.16597 -11.92345 -11.52727 -11.46483 -11.40631 -11.17525 -10.59146 -9.75861 -8.86362 -8.77849 -8.17067 -6.26497 0.43438 0.57643 1.39268 1.39907 1.53724 2.41077 2.45798 2.81317 3.14641 3.54760 3.84420 3.90754 4.08375 4.09509 4.19588 4.27427 4.32942 4.39098 4.43518 4.49408 4.51027 4.63360 4.71329 4.75708 4.81592 4.92553 4.94941 4.96120 4.97922 5.00932 5.17638 5.23514 5.25463 5.28765 5.37495 5.46392 5.50712 5.58501 5.70019 5.75306 6.02134 6.11278 6.44193 6.65633 6.73537 6.90564 7.42567 8.93497 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.005443 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.621193 B = 5142.604648 C = 6349.421880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.330 6.330 4 C 0.124 3.876 5 C -0.211 4.211 6 C -0.084 4.084 7 C -0.131 4.131 8 C -0.103 4.103 9 C -0.084 4.084 10 C -0.119 4.119 11 C 0.106 3.894 12 N -0.532 5.532 13 C 0.066 3.934 14 C -0.177 4.177 15 C 0.208 3.792 16 C -0.514 4.514 17 H 0.056 0.944 18 C 0.003 3.997 19 N -0.935 5.935 20 Si 0.966 3.034 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.278 1.278 24 H 0.046 0.954 25 H 0.056 0.944 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.145 0.855 30 H 0.152 0.848 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.051 0.949 36 H 0.036 0.964 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.033 0.967 42 H -0.019 1.019 43 H -0.011 1.011 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.553 -14.882 -5.096 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.244 6.244 4 C 0.078 3.922 5 C -0.229 4.229 6 C -0.102 4.102 7 C -0.131 4.131 8 C -0.160 4.160 9 C -0.102 4.102 10 C -0.120 4.120 11 C -0.021 4.021 12 N -0.255 5.255 13 C -0.062 4.062 14 C -0.235 4.235 15 C 0.082 3.918 16 C -0.552 4.552 17 H 0.074 0.926 18 C -0.195 4.195 19 N -0.576 5.576 20 Si 0.790 3.210 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.204 1.204 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.125 0.875 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.163 0.837 30 H 0.170 0.830 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.147 0.853 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.052 0.948 42 H -0.001 1.001 43 H 0.007 0.993 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.058 -15.044 -4.948 20.526 hybrid contribution -0.739 1.148 0.307 1.400 sum 12.320 -13.896 -4.640 19.141 Atomic orbital electron populations 1.21783 0.92628 1.03830 1.02419 1.22965 0.96277 0.81287 1.01963 1.86226 1.19381 1.30577 1.88206 1.19038 0.82756 0.93982 0.96393 1.21431 0.94666 0.97904 1.08937 1.21120 0.94047 0.97420 0.97600 1.20082 0.97321 0.92589 1.03114 1.20724 0.89253 1.03140 1.02870 1.20903 0.90883 0.99620 0.98819 1.19221 0.94215 0.92146 1.06384 1.20704 0.96178 0.94109 0.91154 1.62204 1.09845 1.45868 1.07584 1.21901 0.92455 0.94985 0.96875 1.22257 1.00709 0.99003 1.01557 1.19381 0.88480 0.88022 0.95944 1.21415 1.20447 1.14809 0.98535 0.92616 1.25852 0.97405 0.95035 1.01164 1.70098 1.32285 1.19740 1.35438 0.85390 0.78114 0.78083 0.79366 1.19015 1.20232 1.20423 0.93453 0.92491 0.87539 0.90529 0.91515 0.83697 0.83049 0.90515 0.91524 0.90296 0.85300 0.93009 0.94572 0.92697 0.90914 0.90736 0.92359 0.94791 1.00131 0.99273 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 10.28 71.98 0.74 -2.82 16 2 C 0.05 1.25 5.46 71.98 0.39 1.64 16 3 O -0.33 -11.77 9.37 -92.46 -0.87 -12.64 16 4 C 0.12 4.11 6.66 22.51 0.15 4.26 16 5 C -0.21 -5.34 9.04 22.36 0.20 -5.14 16 6 C -0.08 -1.81 9.69 22.25 0.22 -1.60 16 7 C -0.13 -3.00 5.88 -19.85 -0.12 -3.11 16 8 C -0.10 -1.63 10.01 71.24 0.71 -0.91 16 9 C -0.08 -2.36 8.31 22.25 0.18 -2.18 16 10 C -0.12 -4.10 4.58 -19.77 -0.09 -4.19 16 11 C 0.11 4.35 4.57 85.56 0.39 4.75 16 12 N -0.53 -25.00 4.69 -905.37 -4.25 -29.25 16 13 C 0.07 2.74 5.64 86.30 0.49 3.22 16 14 C -0.18 -6.62 9.25 71.98 0.67 -5.96 16 15 C 0.21 11.71 4.50 85.56 0.38 12.10 16 16 C -0.51 -30.47 8.41 25.60 0.22 -30.26 16 17 H 0.06 3.31 7.33 -2.91 -0.02 3.29 16 18 C 0.00 0.18 5.46 84.66 0.46 0.64 16 19 N -0.93 -57.85 13.29 21.45 0.28 -57.56 16 20 Si 0.97 45.83 29.54 68.60 2.03 47.86 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 24 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 26 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.08 1.53 7.66 -2.39 -0.02 1.51 16 28 H 0.07 1.51 7.66 -2.39 -0.02 1.49 16 29 H 0.15 2.89 6.30 -2.91 -0.02 2.87 16 30 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.02 8.09 -2.39 -0.02 1.01 16 33 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 34 H 0.13 3.36 7.75 -2.91 -0.02 3.34 16 35 H 0.05 2.31 7.64 -2.39 -0.02 2.29 16 36 H 0.04 1.42 5.95 -2.39 -0.01 1.41 16 37 H 0.05 2.50 6.97 -2.39 -0.02 2.48 16 38 H 0.07 2.70 6.47 -2.39 -0.02 2.69 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.06 1.99 6.03 -2.39 -0.01 1.97 16 41 H 0.03 1.50 6.31 -2.39 -0.02 1.49 16 42 H -0.02 -1.13 6.01 -2.39 -0.01 -1.14 16 43 H -0.01 -0.67 7.92 -2.39 -0.02 -0.69 16 44 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -70.54 349.21 3.16 -67.38 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.97 Total: 13.77 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 5.00 Total: -29.56 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -3.96 Total: -86.81 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.87 Total: -12.64 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -70.54 3.16 -67.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139603888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.357 kcal (2) G-P(sol) polarization free energy of solvation -70.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds