Wall clock time and date at job start Mon Mar 30 2020 02:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34848 * 126.29418 * 2 1 4 4 N 1.36339 * 108.21789 * 180.16115 * 3 2 1 5 5 H 0.97001 * 125.62966 * 179.83297 * 4 3 2 6 6 C 1.36339 * 108.72687 * 359.56394 * 4 3 2 7 7 C 1.50705 * 125.88597 * 180.24785 * 6 4 3 8 8 N 1.46897 * 109.47030 * 105.15218 * 7 6 4 9 9 C 1.46955 * 111.00146 * 288.17031 * 8 7 6 10 10 C 1.53051 * 109.36884 * 176.81625 * 9 8 7 11 11 N 1.46958 * 109.36413 * 58.39788 * 10 9 8 12 12 C 1.46897 * 110.99742 * 176.81674 * 11 10 9 13 13 C 1.50704 * 109.46953 * 293.79563 * 12 11 10 14 14 H 1.08002 * 119.99927 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00009 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99879 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99975 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47177 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.47215 * 120.00124 * 17 15 13 20 20 H 1.48493 * 109.47211 * 239.99783 * 17 15 13 21 21 C 1.46952 * 110.88167 * 300.68108 * 11 10 9 22 22 C 1.46958 * 110.99742 * 164.37074 * 8 7 6 23 23 C 1.34849 * 108.21955 * 0.26287 * 6 4 3 24 24 C 1.50696 * 126.28827 * 179.97438 * 23 6 4 25 25 H 1.08998 * 109.47348 * 270.31924 * 1 2 3 26 26 H 1.09003 * 109.46695 * 30.31842 * 1 2 3 27 27 H 1.09000 * 109.47049 * 150.31310 * 1 2 3 28 28 H 1.08001 * 125.88952 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.46382 * 225.14962 * 7 6 4 30 30 H 1.09001 * 109.47356 * 345.14890 * 7 6 4 31 31 H 1.09004 * 109.48451 * 296.78441 * 9 8 7 32 32 H 1.08999 * 109.49218 * 56.84343 * 9 8 7 33 33 H 1.09001 * 109.48644 * 298.43439 * 10 9 8 34 34 H 1.08993 * 109.51066 * 178.37836 * 10 9 8 35 35 H 1.08992 * 109.47791 * 53.79692 * 12 11 10 36 36 H 1.09001 * 109.47064 * 173.80258 * 12 11 10 37 37 H 0.97003 * 119.99866 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.49008 * 299.35519 * 21 11 10 39 39 H 1.08995 * 109.48958 * 179.28386 * 21 11 10 40 40 H 1.08993 * 109.49245 * 303.15423 * 22 8 7 41 41 H 1.09001 * 109.48732 * 63.22031 * 22 8 7 42 42 H 1.09005 * 109.47437 * 93.88938 * 24 23 6 43 43 H 1.09000 * 109.47336 * 213.88457 * 24 23 6 44 44 H 1.08999 * 109.47544 * 333.88761 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3052 1.0869 0.0000 4 7 3.6013 0.6638 -0.0036 5 1 4.3831 1.2380 -0.0068 6 6 3.6168 -0.6995 0.0039 7 6 4.8478 -1.5689 0.0083 8 7 5.0393 -2.1397 1.3482 9 6 5.4830 -1.1117 2.3001 10 6 5.5940 -1.7274 3.6969 11 7 6.5406 -2.8510 3.6603 12 6 6.7321 -3.4218 5.0003 13 6 7.4153 -2.4103 5.8842 14 1 7.6803 -1.4403 5.4900 15 6 7.7021 -2.7232 7.1960 16 7 7.3798 -3.9045 7.6758 17 14 8.5483 -1.4692 8.2918 18 1 8.8019 -0.2272 7.5184 19 1 7.6769 -1.1590 9.4537 20 1 9.8381 -2.0243 8.7748 21 6 6.0968 -3.8789 2.7086 22 6 5.9858 -3.2632 1.3117 23 6 2.3408 -1.1356 0.0063 24 6 1.8898 -2.5735 0.0137 25 1 -0.3634 0.0057 1.0276 26 1 -0.3633 0.8872 -0.5188 27 1 -0.3633 -0.8928 -0.5090 28 1 1.9748 2.1151 -0.0004 29 1 4.7261 -2.3745 -0.7158 30 1 5.7176 -0.9687 -0.2587 31 1 6.4561 -0.7280 1.9934 32 1 4.7597 -0.2965 2.3185 33 1 4.6153 -2.0868 4.0147 34 1 5.9506 -0.9743 4.3994 35 1 5.7631 -3.6811 5.4267 36 1 7.3492 -4.3174 4.9289 37 1 7.5818 -4.1248 8.5986 38 1 5.1238 -4.2627 3.0152 39 1 6.8202 -4.6940 2.6902 40 1 5.6291 -4.0166 0.6095 41 1 6.9646 -2.9039 0.9938 42 1 1.7147 -2.8941 1.0407 43 1 0.9669 -2.6677 -0.5585 44 1 2.6613 -3.1987 -0.4355 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140859845.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:00 Heat of formation + Delta-G solvation = 47.647652 kcal Electronic energy + Delta-G solvation = -21887.039425 eV Core-core repulsion = 18839.613086 eV Total energy + Delta-G solvation = -3047.426339 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.24823 -38.59462 -35.16988 -33.12554 -32.59127 -31.29019 -30.40507 -28.75721 -26.86320 -26.42967 -25.09006 -23.44403 -22.88767 -21.34685 -19.54960 -19.16970 -18.60327 -17.30922 -16.30879 -15.89975 -14.96954 -14.62870 -14.29298 -14.27161 -14.18831 -13.81936 -13.57636 -13.20904 -12.77587 -12.69599 -12.63632 -12.46190 -12.29261 -12.06907 -11.87295 -11.71955 -11.59583 -11.15598 -10.96889 -10.85034 -10.73309 -10.61857 -10.37317 -10.27197 -9.72144 -9.15635 -8.43409 -8.33349 -8.13764 -7.81516 -7.20507 -6.01894 -4.03175 2.26399 2.96061 3.30832 3.33527 3.38099 3.42617 4.24842 4.42917 4.85709 4.96856 5.08594 5.14080 5.31513 5.33620 5.36577 5.38053 5.51673 5.57448 5.63002 5.71865 5.74128 5.79701 5.85026 5.89897 5.99543 6.04416 6.08893 6.20958 6.26099 6.38952 6.45974 6.47227 6.61686 6.71526 7.10161 7.19213 7.22018 7.30507 7.37984 7.40665 7.65186 7.81305 8.10686 8.22675 8.57030 9.04548 9.60986 11.09059 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024351 B = 0.003761 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.551463 B = 7442.545027 C = 7823.658135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.171 4.171 3 C -0.017 4.017 4 N -0.558 5.558 5 H 0.410 0.590 6 C 0.025 3.975 7 C 0.126 3.874 8 N -0.529 5.529 9 C 0.062 3.938 10 C 0.069 3.931 11 N -0.539 5.539 12 C 0.193 3.807 13 C -0.506 4.506 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.057 3.943 22 C 0.062 3.938 23 C -0.139 4.139 24 C -0.070 4.070 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.158 0.842 29 H 0.089 0.911 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.066 0.934 33 H 0.029 0.971 34 H 0.084 0.916 35 H -0.008 1.008 36 H 0.030 0.970 37 H 0.260 0.740 38 H 0.031 0.969 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.620 6.725 -17.854 21.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.178 4.178 3 C -0.147 4.147 4 N -0.153 5.153 5 H 0.246 0.754 6 C -0.087 4.087 7 C -0.003 4.003 8 N -0.254 5.254 9 C -0.066 4.066 10 C -0.059 4.059 11 N -0.264 5.264 12 C 0.068 3.932 13 C -0.545 4.545 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.072 4.072 22 C -0.066 4.066 23 C -0.146 4.146 24 C -0.128 4.128 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.176 0.824 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.102 0.898 35 H 0.010 0.990 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.465 6.694 -17.685 21.146 hybrid contribution 0.849 1.002 0.801 1.538 sum -8.615 7.695 -16.885 20.458 Atomic orbital electron populations 1.20068 0.90660 1.01386 1.01223 1.19397 0.95298 0.92344 1.10803 1.21496 0.82741 0.98760 1.11750 1.41838 1.07685 1.06464 1.59317 0.75393 1.19931 0.95995 0.82266 1.10489 1.20407 0.91960 0.96012 0.91885 1.62125 1.47633 1.09583 1.06068 1.22213 0.97636 0.93529 0.93250 1.21950 0.94393 0.95284 0.94305 1.62289 1.44625 1.08365 1.11125 1.19700 0.95555 0.95490 0.82440 1.21191 1.37890 1.00571 0.94839 0.91961 1.24991 0.96091 0.95500 0.98052 1.69973 1.47847 1.20537 1.15413 0.86459 0.79188 0.81467 0.80405 1.19738 1.21098 1.21015 1.22055 0.98714 0.94835 0.91615 1.22172 0.93641 0.92797 0.98006 1.19108 0.91269 0.95247 1.09001 1.20024 0.99888 0.91333 1.01533 0.92343 0.92743 0.92258 0.82432 0.89264 0.94793 0.94757 0.91570 0.95279 0.89777 0.99041 0.95223 0.92990 0.95036 0.91013 0.91060 0.94410 0.91898 0.93002 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.22 36.01 0.37 -0.37 16 2 C -0.17 -2.08 6.14 -104.82 -0.64 -2.72 16 3 C -0.02 -0.18 11.85 -16.75 -0.20 -0.38 16 4 N -0.56 -6.03 6.07 -9.12 -0.06 -6.08 16 5 H 0.41 3.45 8.96 -40.82 -0.37 3.08 16 6 C 0.03 0.32 5.78 -81.79 -0.47 -0.15 16 7 C 0.13 1.54 5.09 -4.97 -0.03 1.51 16 8 N -0.53 -7.87 4.66 -235.90 -1.10 -8.97 16 9 C 0.06 1.01 5.44 -3.77 -0.02 0.99 16 10 C 0.07 1.41 5.43 -3.77 -0.02 1.39 16 11 N -0.54 -11.87 4.70 -235.91 -1.11 -12.98 16 12 C 0.19 5.12 4.72 -4.98 -0.02 5.10 16 13 C -0.51 -14.35 8.47 -34.44 -0.29 -14.65 16 14 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 17 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C 0.06 1.05 5.61 -3.76 -0.02 1.03 16 22 C 0.06 0.92 5.59 -3.76 -0.02 0.90 16 23 C -0.14 -1.83 6.14 -104.82 -0.64 -2.47 16 24 C -0.07 -0.84 10.01 36.00 0.36 -0.48 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 28 H 0.16 1.27 8.06 -52.49 -0.42 0.84 16 29 H 0.09 0.99 7.43 -51.93 -0.39 0.60 16 30 H 0.03 0.39 8.05 -51.93 -0.42 -0.03 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.04 7.41 -51.93 -0.39 0.66 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.82 6.79 -51.93 -0.35 1.47 16 35 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 36 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 40 H 0.07 0.90 8.02 -51.93 -0.42 0.48 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.54 7.48 -51.93 -0.39 0.15 16 44 H 0.06 0.64 7.40 -51.93 -0.38 0.26 16 LS Contribution 349.23 15.07 5.26 5.26 Total: -1.00 -31.38 349.23 -10.67 -42.05 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.63 Total: -1.01 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -1.75 Total: -8.83 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -1.53 Total: -54.22 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.38 -10.67 -42.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140859845.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.700 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds