Wall clock time and date at job start Mon Mar 30 2020 02:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34848 * 126.29418 * 2 1 4 4 N 1.36339 * 108.21789 * 180.16115 * 3 2 1 5 5 H 0.97001 * 125.62966 * 179.83297 * 4 3 2 6 6 C 1.36339 * 108.72687 * 359.56394 * 4 3 2 7 7 C 1.50705 * 125.88597 * 180.24785 * 6 4 3 8 8 N 1.46897 * 109.47030 * 105.15218 * 7 6 4 9 9 C 1.46955 * 111.00146 * 288.17031 * 8 7 6 10 10 C 1.53051 * 109.36884 * 176.81625 * 9 8 7 11 11 N 1.46958 * 109.36413 * 58.39788 * 10 9 8 12 12 C 1.46897 * 110.99742 * 176.81674 * 11 10 9 13 13 C 1.50704 * 109.46953 * 293.79563 * 12 11 10 14 14 H 1.08002 * 119.99927 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00009 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99879 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99975 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47177 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.47215 * 120.00124 * 17 15 13 20 20 H 1.48493 * 109.47211 * 239.99783 * 17 15 13 21 21 C 1.46952 * 110.88167 * 300.68108 * 11 10 9 22 22 C 1.46958 * 110.99742 * 164.37074 * 8 7 6 23 23 C 1.34849 * 108.21955 * 0.26287 * 6 4 3 24 24 C 1.50696 * 126.28827 * 179.97438 * 23 6 4 25 25 H 1.08998 * 109.47348 * 270.31924 * 1 2 3 26 26 H 1.09003 * 109.46695 * 30.31842 * 1 2 3 27 27 H 1.09000 * 109.47049 * 150.31310 * 1 2 3 28 28 H 1.08001 * 125.88952 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.46382 * 225.14962 * 7 6 4 30 30 H 1.09001 * 109.47356 * 345.14890 * 7 6 4 31 31 H 1.09004 * 109.48451 * 296.78441 * 9 8 7 32 32 H 1.08999 * 109.49218 * 56.84343 * 9 8 7 33 33 H 1.09001 * 109.48644 * 298.43439 * 10 9 8 34 34 H 1.08993 * 109.51066 * 178.37836 * 10 9 8 35 35 H 1.08992 * 109.47791 * 53.79692 * 12 11 10 36 36 H 1.09001 * 109.47064 * 173.80258 * 12 11 10 37 37 H 0.97003 * 119.99866 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.49008 * 299.35519 * 21 11 10 39 39 H 1.08995 * 109.48958 * 179.28386 * 21 11 10 40 40 H 1.08993 * 109.49245 * 303.15423 * 22 8 7 41 41 H 1.09001 * 109.48732 * 63.22031 * 22 8 7 42 42 H 1.09005 * 109.47437 * 93.88938 * 24 23 6 43 43 H 1.09000 * 109.47336 * 213.88457 * 24 23 6 44 44 H 1.08999 * 109.47544 * 333.88761 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3052 1.0869 0.0000 4 7 3.6013 0.6638 -0.0036 5 1 4.3831 1.2380 -0.0068 6 6 3.6168 -0.6995 0.0039 7 6 4.8478 -1.5689 0.0083 8 7 5.0393 -2.1397 1.3482 9 6 5.4830 -1.1117 2.3001 10 6 5.5940 -1.7274 3.6969 11 7 6.5406 -2.8510 3.6603 12 6 6.7321 -3.4218 5.0003 13 6 7.4153 -2.4103 5.8842 14 1 7.6803 -1.4403 5.4900 15 6 7.7021 -2.7232 7.1960 16 7 7.3798 -3.9045 7.6758 17 14 8.5483 -1.4692 8.2918 18 1 8.8019 -0.2272 7.5184 19 1 7.6769 -1.1590 9.4537 20 1 9.8381 -2.0243 8.7748 21 6 6.0968 -3.8789 2.7086 22 6 5.9858 -3.2632 1.3117 23 6 2.3408 -1.1356 0.0063 24 6 1.8898 -2.5735 0.0137 25 1 -0.3634 0.0057 1.0276 26 1 -0.3633 0.8872 -0.5188 27 1 -0.3633 -0.8928 -0.5090 28 1 1.9748 2.1151 -0.0004 29 1 4.7261 -2.3745 -0.7158 30 1 5.7176 -0.9687 -0.2587 31 1 6.4561 -0.7280 1.9934 32 1 4.7597 -0.2965 2.3185 33 1 4.6153 -2.0868 4.0147 34 1 5.9506 -0.9743 4.3994 35 1 5.7631 -3.6811 5.4267 36 1 7.3492 -4.3174 4.9289 37 1 7.5818 -4.1248 8.5986 38 1 5.1238 -4.2627 3.0152 39 1 6.8202 -4.6940 2.6902 40 1 5.6291 -4.0166 0.6095 41 1 6.9646 -2.9039 0.9938 42 1 1.7147 -2.8941 1.0407 43 1 0.9669 -2.6677 -0.5585 44 1 2.6613 -3.1987 -0.4355 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140859845.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:00 Heat of formation + Delta-G solvation = 26.445419 kcal Electronic energy + Delta-G solvation = -21887.958823 eV Core-core repulsion = 18839.613086 eV Total energy + Delta-G solvation = -3048.345737 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.11362 -40.02845 -36.73254 -34.62944 -33.96557 -32.38560 -31.84381 -30.19607 -28.37139 -27.27263 -26.49666 -24.85458 -24.27202 -23.16573 -20.67456 -20.38058 -19.51048 -18.51173 -18.17797 -17.29034 -16.49296 -16.10505 -15.84998 -15.53194 -15.39538 -15.17957 -14.84931 -14.60316 -14.17503 -13.74543 -13.54327 -13.53308 -13.38854 -13.36540 -13.24805 -12.98268 -12.83625 -12.70911 -12.47182 -12.37529 -12.27546 -12.14345 -11.93221 -11.80357 -11.51925 -11.18632 -10.64123 -9.32161 -9.19778 -9.05401 -8.70809 -8.22387 -6.32963 1.37801 1.39572 1.39965 1.53659 2.05928 2.38679 2.53187 3.09138 3.10980 3.28501 3.90209 3.98203 4.18525 4.23073 4.32498 4.35503 4.39079 4.47934 4.51647 4.63394 4.65808 4.69357 4.79714 4.84332 4.92959 4.95247 4.95759 5.01559 5.03244 5.11017 5.19778 5.26355 5.27603 5.34809 5.52407 5.60394 5.62361 5.98653 6.06111 6.06514 6.27412 6.31823 6.39779 6.60896 6.82910 6.88644 7.36881 8.89214 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024351 B = 0.003761 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.551463 B = 7442.545027 C = 7823.658135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.198 4.198 3 C -0.012 4.012 4 N -0.553 5.553 5 H 0.421 0.579 6 C 0.011 3.989 7 C 0.131 3.869 8 N -0.539 5.539 9 C 0.079 3.921 10 C 0.073 3.927 11 N -0.542 5.542 12 C 0.208 3.792 13 C -0.523 4.523 14 H 0.062 0.938 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.971 3.029 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.277 1.277 21 C 0.053 3.947 22 C 0.072 3.928 23 C -0.163 4.163 24 C -0.066 4.066 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.186 0.814 29 H 0.104 0.896 30 H 0.048 0.952 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.009 0.991 34 H 0.065 0.935 35 H -0.043 1.043 36 H 0.006 0.994 37 H 0.265 0.735 38 H 0.019 0.981 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.042 0.958 42 H 0.045 0.955 43 H 0.062 0.938 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.377 8.522 -19.376 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.205 4.205 3 C -0.143 4.143 4 N -0.149 5.149 5 H 0.259 0.741 6 C -0.102 4.102 7 C 0.003 3.997 8 N -0.264 5.264 9 C -0.049 4.049 10 C -0.056 4.056 11 N -0.267 5.267 12 C 0.082 3.918 13 C -0.562 4.562 14 H 0.080 0.920 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.795 3.205 18 H -0.187 1.187 19 H -0.204 1.204 20 H -0.202 1.202 21 C -0.075 4.075 22 C -0.055 4.055 23 C -0.170 4.170 24 C -0.124 4.124 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.203 0.797 29 H 0.123 0.877 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.027 0.973 34 H 0.083 0.917 35 H -0.025 1.025 36 H 0.024 0.976 37 H 0.074 0.926 38 H 0.037 0.963 39 H 0.092 0.908 40 H 0.121 0.879 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.220 8.502 -19.241 22.968 hybrid contribution 0.709 0.414 1.240 1.487 sum -8.511 8.915 -18.001 21.816 Atomic orbital electron populations 1.20074 0.89522 1.02282 1.01212 1.19779 0.96501 0.92569 1.11649 1.21980 0.82514 0.99808 1.10039 1.41883 1.08296 1.06095 1.58629 0.74068 1.19987 0.95888 0.83090 1.11247 1.20422 0.92365 0.96667 0.90200 1.62069 1.47433 1.09308 1.07567 1.21953 0.98191 0.93691 0.91063 1.21906 0.92616 0.94215 0.96870 1.62234 1.45799 1.09516 1.09156 1.19353 0.93079 0.94558 0.84806 1.21470 1.38207 1.00825 0.95655 0.91961 1.25943 0.96606 0.97585 0.99589 1.70100 1.48807 1.22569 1.16044 0.85308 0.78046 0.78913 0.78187 1.18679 1.20417 1.20216 1.22181 0.97908 0.94452 0.92967 1.22097 0.94243 0.93495 0.95711 1.19427 0.92064 0.95921 1.09593 1.19978 1.00609 0.91188 1.00594 0.92761 0.91095 0.92159 0.79707 0.87744 0.93419 0.94342 0.90654 0.97278 0.91695 1.02506 0.97636 0.92638 0.96295 0.90820 0.87923 0.93941 0.93661 0.91939 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.33 10.22 71.24 0.73 -0.60 16 2 C -0.20 -4.47 6.14 -19.99 -0.12 -4.60 16 3 C -0.01 -0.23 11.85 83.21 0.99 0.76 16 4 N -0.55 -10.56 6.07 -182.77 -1.11 -11.67 16 5 H 0.42 5.91 8.96 -92.71 -0.83 5.08 16 6 C 0.01 0.24 5.78 41.08 0.24 0.48 16 7 C 0.13 2.84 5.09 85.56 0.44 3.28 16 8 N -0.54 -15.06 4.66 -900.26 -4.19 -19.25 16 9 C 0.08 2.51 5.44 86.31 0.47 2.98 16 10 C 0.07 3.01 5.43 86.31 0.47 3.48 16 11 N -0.54 -24.44 4.70 -900.30 -4.23 -28.67 16 12 C 0.21 11.56 4.72 85.56 0.40 11.96 16 13 C -0.52 -30.38 8.47 25.60 0.22 -30.16 16 14 H 0.06 3.54 7.13 -2.91 -0.02 3.52 16 15 C 0.00 0.04 5.46 84.65 0.46 0.50 16 16 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 17 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 18 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 C 0.05 1.98 5.61 86.31 0.48 2.47 16 22 C 0.07 2.02 5.59 86.31 0.48 2.50 16 23 C -0.16 -4.04 6.14 -20.00 -0.12 -4.16 16 24 C -0.07 -1.52 10.01 71.23 0.71 -0.81 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.04 7.45 -2.39 -0.02 1.03 16 28 H 0.19 2.36 8.06 -2.91 -0.02 2.34 16 29 H 0.10 1.97 7.43 -2.39 -0.02 1.95 16 30 H 0.05 0.93 8.05 -2.39 -0.02 0.91 16 31 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 2.25 7.41 -2.39 -0.02 2.24 16 33 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.06 2.89 6.79 -2.39 -0.02 2.88 16 35 H -0.04 -2.61 8.12 -2.39 -0.02 -2.63 16 36 H 0.01 0.33 8.03 -2.39 -0.02 0.31 16 37 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 38 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 39 H 0.07 2.67 8.07 -2.39 -0.02 2.65 16 40 H 0.10 2.27 8.02 -2.39 -0.02 2.25 16 41 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.06 1.25 7.48 -2.39 -0.02 1.23 16 44 H 0.06 1.30 7.40 -2.39 -0.02 1.28 16 Total: -1.00 -68.84 349.23 -1.24 -70.09 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.14 Total: 11.61 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 5.84 Total: -11.93 kcal Atomic # 7 Polarization: -107.36 SS G_CDS: -9.25 Total: -116.61 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -68.84 -1.24 -70.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140859845.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.531 kcal (2) G-P(sol) polarization free energy of solvation -68.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds