Wall clock time and date at job start Mon Mar 30 2020 02:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38684 * 119.27752 * 2 1 4 4 C 1.38007 * 119.62417 * 180.02562 * 3 2 1 5 5 C 1.40997 * 118.28527 * 359.97438 * 4 3 2 6 6 C 1.41016 * 120.70710 * 180.02562 * 5 4 3 7 7 H 1.08004 * 119.99916 * 204.89965 * 6 5 4 8 8 C 1.39943 * 120.00230 * 24.89687 * 6 5 4 9 9 N 1.30873 * 119.99542 * 14.50901 * 8 6 5 10 10 Si 1.86799 * 120.00451 * 194.50655 * 8 6 5 11 11 H 1.48498 * 109.46911 * 60.00033 * 10 8 6 12 12 H 1.48502 * 109.47035 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46925 * 300.00512 * 10 8 6 14 14 C 1.41712 * 118.58635 * 0.02562 * 5 4 3 15 15 N 1.38095 * 119.90518 * 179.97438 * 14 5 4 16 16 C 1.46500 * 119.99764 * 179.97438 * 15 14 5 17 17 H 1.08993 * 109.47228 * 324.99744 * 16 15 14 18 18 C 1.53003 * 109.47015 * 85.00353 * 16 15 14 19 19 N 1.46902 * 109.46829 * 304.99671 * 18 16 15 20 20 C 1.53002 * 109.46681 * 204.99665 * 16 15 14 21 21 C 1.53003 * 109.46834 * 60.00577 * 20 16 15 22 22 C 1.52998 * 109.46889 * 180.02562 * 20 16 15 23 23 C 1.52995 * 109.47495 * 300.00611 * 20 16 15 24 24 N 1.31970 * 119.27441 * 179.73806 * 2 1 3 25 25 H 1.08992 * 109.47131 * 89.99227 * 1 2 3 26 26 H 1.09002 * 109.46445 * 329.99707 * 1 2 3 27 27 H 1.08994 * 109.47156 * 210.00214 * 1 2 3 28 28 H 1.08004 * 120.18473 * 0.02802 * 3 2 1 29 29 H 1.07997 * 120.85464 * 180.02562 * 4 3 2 30 30 H 0.97000 * 119.99939 * 179.97438 * 9 8 6 31 31 H 0.97001 * 119.99720 * 0.02562 * 15 14 5 32 32 H 1.09000 * 109.47021 * 64.99514 * 18 16 15 33 33 H 1.08997 * 109.47048 * 184.99433 * 18 16 15 34 34 H 1.00890 * 111.00237 * 56.04820 * 19 18 16 35 35 H 1.00903 * 110.99695 * 180.02562 * 19 18 16 36 36 H 1.08993 * 109.47620 * 59.99588 * 21 20 16 37 37 H 1.09000 * 109.46800 * 179.97438 * 21 20 16 38 38 H 1.09006 * 109.47269 * 299.99530 * 21 20 16 39 39 H 1.08996 * 109.47377 * 60.00088 * 22 20 16 40 40 H 1.09008 * 109.47163 * 180.02562 * 22 20 16 41 41 H 1.09000 * 109.47358 * 300.00016 * 22 20 16 42 42 H 1.08991 * 109.47585 * 59.99722 * 23 20 16 43 43 H 1.09002 * 109.47056 * 180.02562 * 23 20 16 44 44 H 1.09009 * 109.46705 * 299.99490 * 23 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1853 1.2097 0.0000 4 6 3.5653 1.2180 -0.0005 5 6 4.2410 -0.0195 -0.0005 6 6 5.6502 -0.0706 -0.0005 7 1 6.1591 -0.9380 -0.3943 8 6 6.3893 1.0027 0.5097 9 7 5.7989 1.9167 1.2368 10 14 8.2185 1.1305 0.1530 11 1 8.4321 1.2132 -1.3142 12 1 8.7655 2.3487 0.8028 13 1 8.9120 -0.0690 0.6874 14 6 3.4737 -1.2109 -0.0005 15 7 4.1073 -2.4379 -0.0010 16 6 3.3161 -3.6709 -0.0004 17 1 2.4119 -3.5221 0.5897 18 6 2.9338 -4.0322 -1.4372 19 7 2.2452 -2.8946 -2.0615 20 6 4.1415 -4.8062 0.6085 21 6 4.5238 -4.4449 2.0452 22 6 3.3155 -6.0940 0.6085 23 6 5.4108 -5.0150 -0.2198 24 7 2.1524 -1.1511 0.0053 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3632 0.8900 0.5139 27 1 -0.3633 -0.8899 0.5138 28 1 1.6365 2.1399 0.0005 29 1 4.1136 2.1485 -0.0001 30 1 6.3112 2.6605 1.5907 31 1 5.0763 -2.4834 -0.0010 32 1 3.8343 -4.2676 -2.0045 33 1 2.2721 -4.8983 -1.4302 34 1 2.8137 -2.0621 -2.0223 35 1 1.9818 -3.1086 -3.0117 36 1 3.6196 -4.2960 2.6354 37 1 5.1115 -5.2538 2.4792 38 1 5.1125 -3.5274 2.0449 39 1 3.0434 -6.3512 -0.4151 40 1 3.9034 -6.9028 1.0428 41 1 2.4110 -5.9455 1.1984 42 1 5.9994 -4.0977 -0.2203 43 1 5.9986 -5.8241 0.2138 44 1 5.1384 -5.2725 -1.2434 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160914680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:58 Heat of formation + Delta-G solvation = 6.605813 kcal Electronic energy + Delta-G solvation = -22935.712785 eV Core-core repulsion = 19886.506738 eV Total energy + Delta-G solvation = -3049.206046 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.74484 -39.29441 -35.93034 -35.39423 -34.17792 -32.40536 -31.09052 -29.40341 -28.51526 -28.19079 -27.32925 -25.51454 -23.41206 -22.43205 -22.13552 -19.48483 -19.02587 -17.79404 -17.19636 -16.98111 -16.47641 -15.94818 -15.53371 -15.29376 -14.87703 -14.75716 -14.65898 -14.19894 -14.03149 -13.78646 -13.46803 -13.28559 -13.10629 -13.07211 -12.89518 -12.83460 -12.68146 -12.57739 -12.44264 -12.32016 -12.13722 -11.65682 -11.58656 -11.50503 -11.28623 -11.04468 -10.49352 -9.73588 -9.58766 -9.21176 -8.55945 -8.15371 -6.05505 1.00252 1.34889 1.39268 1.48485 1.55937 2.22980 2.85044 2.92233 3.63232 3.86522 3.97796 4.03429 4.15762 4.30835 4.45381 4.57006 4.61450 4.67606 4.80668 4.81684 4.83178 4.88497 4.93347 4.98907 5.07705 5.08035 5.10092 5.13274 5.20279 5.22295 5.29957 5.34681 5.35207 5.51174 5.53453 5.58721 5.91800 6.00613 6.22203 6.44795 6.52133 6.76163 6.86398 6.95780 7.03362 7.28911 8.12821 8.44951 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013078 B = 0.007817 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.532018 B = 3580.974726 C = 5073.791499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.030 3.970 3 C -0.207 4.207 4 C -0.145 4.145 5 C -0.010 4.010 6 C -0.478 4.478 7 H 0.075 0.925 8 C 0.032 3.968 9 N -0.837 5.837 10 Si 0.975 3.025 11 H -0.264 1.264 12 H -0.275 1.275 13 H -0.259 1.259 14 C 0.307 3.693 15 N -0.717 5.717 16 C 0.179 3.821 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.839 5.839 20 C -0.071 4.071 21 C -0.134 4.134 22 C -0.133 4.133 23 C -0.141 4.141 24 N -0.499 5.499 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.282 0.718 31 H 0.398 0.602 32 H 0.025 0.975 33 H 0.082 0.918 34 H 0.333 0.667 35 H 0.331 0.669 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.036 0.964 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.040 0.960 43 H 0.072 0.928 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.997 -11.527 -2.723 11.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.106 4.106 3 C -0.229 4.229 4 C -0.172 4.172 5 C -0.017 4.017 6 C -0.510 4.510 7 H 0.093 0.907 8 C -0.181 4.181 9 N -0.465 5.465 10 Si 0.797 3.203 11 H -0.189 1.189 12 H -0.200 1.200 13 H -0.184 1.184 14 C 0.069 3.931 15 N -0.356 5.356 16 C 0.073 3.927 17 H 0.074 0.926 18 C -0.075 4.075 19 N -0.370 5.370 20 C -0.072 4.072 21 C -0.192 4.192 22 C -0.191 4.191 23 C -0.198 4.198 24 N -0.217 5.217 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.092 0.908 31 H 0.236 0.764 32 H 0.043 0.957 33 H 0.100 0.900 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.091 0.909 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.152 -12.275 -1.995 12.621 hybrid contribution 2.450 1.599 -0.583 2.983 sum 0.298 -10.676 -2.578 10.987 Atomic orbital electron populations 1.20270 0.88914 1.01490 1.01526 1.20725 0.96455 0.87580 1.05823 1.21442 0.94775 0.98013 1.08720 1.21363 0.93139 0.97901 1.04773 1.18247 0.94595 0.91094 0.97769 1.19276 0.91135 1.03354 1.37257 0.90667 1.26583 1.04861 0.94377 0.92237 1.69888 1.39927 1.11259 1.25460 0.85360 0.77048 0.78611 0.79326 1.18859 1.20022 1.18362 1.18608 0.88345 0.86153 0.99997 1.43945 1.07278 1.01112 1.83241 1.20727 0.93482 0.83410 0.95124 0.92599 1.22313 0.96161 0.93689 0.95288 1.58662 1.49676 1.05983 1.22665 1.20768 0.96079 0.95046 0.95316 1.21778 1.00839 1.00987 0.95557 1.21831 0.99396 0.95295 1.02533 1.21916 0.96391 1.01402 1.00099 1.66684 1.07432 1.28992 1.18570 0.91748 0.91409 0.92539 0.87420 0.87615 0.90797 0.76412 0.95672 0.90012 0.85284 0.85727 0.93888 0.90992 0.94474 0.91540 0.90922 0.92937 0.94130 0.90917 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.31 10.15 71.24 0.72 -1.58 16 2 C 0.03 1.35 6.79 42.65 0.29 1.64 16 3 C -0.21 -9.98 9.69 22.32 0.22 -9.76 16 4 C -0.15 -7.80 8.79 22.89 0.20 -7.59 16 5 C -0.01 -0.53 5.60 -21.06 -0.12 -0.65 16 6 C -0.48 -24.75 8.54 23.36 0.20 -24.55 16 7 H 0.08 3.65 6.67 -2.91 -0.02 3.63 16 8 C 0.03 1.61 5.23 85.25 0.45 2.05 16 9 N -0.84 -44.41 10.83 21.83 0.24 -44.17 16 10 Si 0.97 38.29 29.58 68.60 2.03 40.32 16 11 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 12 H -0.28 -10.52 7.11 99.48 0.71 -9.82 16 13 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 14 C 0.31 14.67 5.81 134.05 0.78 15.45 16 15 N -0.72 -28.55 4.14 -323.13 -1.34 -29.89 16 16 C 0.18 5.90 1.71 44.99 0.08 5.98 16 17 H 0.06 2.20 7.53 -2.39 -0.02 2.18 16 18 C 0.06 1.71 5.81 86.30 0.50 2.21 16 19 N -0.84 -28.70 8.45 -186.71 -1.58 -30.28 16 20 C -0.07 -1.82 0.59 -52.18 -0.03 -1.85 16 21 C -0.13 -3.74 8.32 71.98 0.60 -3.15 16 22 C -0.13 -2.69 8.12 71.98 0.58 -2.11 16 23 C -0.14 -3.27 7.96 71.98 0.57 -2.70 16 24 N -0.50 -23.27 7.39 -179.56 -1.33 -24.59 16 25 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 29 H 0.11 5.97 6.17 -2.91 -0.02 5.96 16 30 H 0.28 13.77 8.30 -92.71 -0.77 13.00 16 31 H 0.40 15.84 4.85 -92.71 -0.45 15.39 16 32 H 0.03 0.71 6.17 -2.39 -0.01 0.69 16 33 H 0.08 2.13 6.71 -2.39 -0.02 2.11 16 34 H 0.33 13.45 6.18 -89.70 -0.55 12.90 16 35 H 0.33 9.62 9.08 -89.69 -0.81 8.81 16 36 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.04 1.22 7.44 -2.38 -0.02 1.20 16 39 H 0.07 1.22 6.54 -2.39 -0.02 1.21 16 40 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.04 1.08 6.50 -2.39 -0.02 1.06 16 43 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.06 1.40 6.32 -2.38 -0.02 1.39 16 Total: -1.00 -58.95 336.42 2.27 -56.68 By element: Atomic # 1 Polarization: 59.33 SS G_CDS: -0.80 Total: 58.54 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 5.04 Total: -26.61 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -4.01 Total: -128.93 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -58.95 2.27 -56.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160914680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.286 kcal (2) G-P(sol) polarization free energy of solvation -58.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds