Wall clock time and date at job start Mon Mar 30 2020 02:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38680 * 119.27799 * 2 1 4 4 C 1.38015 * 119.62494 * 179.72709 * 3 2 1 5 5 C 1.41000 * 118.28390 * 0.53195 * 4 3 2 6 6 C 1.41010 * 120.70631 * 179.71159 * 5 4 3 7 7 H 1.08003 * 120.00305 * 153.88091 * 6 5 4 8 8 C 1.39951 * 120.00013 * 333.87348 * 6 5 4 9 9 N 1.30873 * 119.99898 * 161.97155 * 8 6 5 10 10 Si 1.86798 * 120.00032 * 341.97721 * 8 6 5 11 11 H 1.48495 * 109.47037 * 95.29916 * 10 8 6 12 12 H 1.48501 * 109.46827 * 215.29935 * 10 8 6 13 13 H 1.48495 * 109.46907 * 335.29709 * 10 8 6 14 14 C 1.41711 * 118.58515 * 359.73167 * 5 4 3 15 15 N 1.38089 * 119.90157 * 179.97438 * 14 5 4 16 16 C 1.46897 * 111.00144 * 116.10803 * 15 14 5 17 17 C 1.46906 * 111.00015 * 240.06179 * 15 14 5 18 18 C 1.52996 * 109.47231 * 169.99741 * 17 15 14 19 19 C 1.52997 * 109.46933 * 179.97438 * 18 17 15 20 20 N 1.46904 * 109.47057 * 180.02562 * 19 18 17 21 21 C 1.46895 * 110.99869 * 170.00422 * 20 19 18 22 22 C 1.46903 * 110.99902 * 293.95426 * 20 19 18 23 23 N 1.31971 * 119.27444 * 180.26983 * 2 1 3 24 24 H 1.08999 * 109.47111 * 269.73018 * 1 2 3 25 25 H 1.08998 * 109.47724 * 149.73177 * 1 2 3 26 26 H 1.09001 * 109.47386 * 29.72913 * 1 2 3 27 27 H 1.07998 * 120.19051 * 359.97438 * 3 2 1 28 28 H 1.08001 * 120.85496 * 180.24431 * 4 3 2 29 29 H 0.97001 * 119.99994 * 179.97438 * 9 8 6 30 30 H 1.09007 * 109.46800 * 66.92257 * 16 15 14 31 31 H 1.09001 * 109.47466 * 186.91964 * 16 15 14 32 32 H 1.08996 * 109.47429 * 306.92333 * 16 15 14 33 33 H 1.08999 * 109.47097 * 290.00647 * 17 15 14 34 34 H 1.09004 * 109.46825 * 50.00071 * 17 15 14 35 35 H 1.08997 * 109.47414 * 300.00811 * 18 17 15 36 36 H 1.09004 * 109.46947 * 60.00404 * 18 17 15 37 37 H 1.08997 * 109.47608 * 300.00136 * 19 18 17 38 38 H 1.09004 * 109.46909 * 60.00461 * 19 18 17 39 39 H 1.08996 * 109.47560 * 60.00123 * 21 20 19 40 40 H 1.09004 * 109.46971 * 180.02562 * 21 20 19 41 41 H 1.08999 * 109.47347 * 299.99666 * 21 20 19 42 42 H 1.08998 * 109.46783 * 60.00222 * 22 20 19 43 43 H 1.09003 * 109.47117 * 179.97438 * 22 20 19 44 44 H 1.08989 * 109.47237 * 300.00065 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.2096 0.0000 4 6 3.5652 1.2180 0.0057 5 6 4.2409 -0.0195 -0.0001 6 6 5.6501 -0.0706 -0.0008 7 1 6.1595 -0.9312 0.4069 8 6 6.3886 0.9940 -0.5299 9 7 7.6549 1.1263 -0.2270 10 14 5.5668 2.2261 -1.6683 11 1 5.1159 3.4023 -0.8820 12 1 6.5357 2.6652 -2.7045 13 1 4.3958 1.5901 -2.3235 14 6 3.4736 -1.2109 -0.0057 15 7 4.1073 -2.4378 -0.0120 16 6 3.8132 -3.1886 1.2158 17 6 3.7403 -3.2138 -1.2042 18 6 4.6402 -4.4468 -1.3072 19 6 4.2575 -5.2552 -2.5485 20 7 5.1212 -6.4395 -2.6470 21 6 4.6354 -7.3605 -3.6832 22 6 6.5165 -6.0541 -2.8974 23 7 2.1523 -1.1512 -0.0054 24 1 -0.3633 -0.0048 1.0276 25 1 -0.3634 -0.8875 -0.5180 26 1 -0.3634 0.8924 -0.5096 27 1 1.6365 2.1399 -0.0004 28 1 4.1135 2.1485 0.0098 29 1 8.1669 1.8639 -0.5941 30 1 2.7569 -3.4575 1.2330 31 1 4.4191 -4.0943 1.2419 32 1 4.0451 -2.5712 2.0836 33 1 2.6997 -3.5288 -1.1266 34 1 3.8675 -2.5959 -2.0932 35 1 5.6808 -4.1318 -1.3848 36 1 4.5130 -5.0647 -0.4182 37 1 3.2170 -5.5703 -2.4704 38 1 4.3844 -4.6376 -3.4376 39 1 4.6285 -6.8519 -4.6472 40 1 5.2927 -8.2286 -3.7347 41 1 3.6246 -7.6848 -3.4362 42 1 6.8730 -5.4286 -2.0790 43 1 7.1342 -6.9496 -2.9655 44 1 6.5776 -5.4982 -3.8329 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163597809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:33 Heat of formation + Delta-G solvation = 20.168205 kcal Electronic energy + Delta-G solvation = -21960.487847 eV Core-core repulsion = 18911.869910 eV Total energy + Delta-G solvation = -3048.617937 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.95672 -38.89071 -37.61961 -36.00402 -33.58578 -33.19774 -31.44221 -29.64176 -28.48546 -27.85609 -26.75265 -25.11538 -23.75787 -22.73473 -21.74908 -21.48911 -19.30937 -17.80069 -17.55299 -16.83646 -16.51487 -16.46822 -15.68416 -15.56262 -15.40047 -15.24447 -15.13725 -14.62228 -14.34306 -13.96411 -13.68576 -13.41590 -13.28205 -13.09088 -13.05019 -12.93339 -12.77545 -12.70192 -12.56092 -12.48670 -12.22697 -12.08673 -11.91452 -11.77913 -11.43724 -11.31828 -10.23679 -10.18222 -9.39954 -9.33456 -9.17285 -8.94744 -6.43373 0.54434 0.76949 1.22082 1.35904 1.44134 2.06474 2.58762 2.86700 3.21802 3.44253 3.94894 4.00167 4.14081 4.20839 4.23163 4.38203 4.46411 4.50282 4.52151 4.54611 4.63233 4.68071 4.70213 4.73508 4.79181 4.82516 4.88273 4.94356 4.96181 4.99731 5.00532 5.03926 5.15556 5.23072 5.25388 5.37227 5.60681 5.64396 6.02112 6.03165 6.11501 6.24765 6.27582 6.40443 6.73664 6.97105 7.59297 8.11226 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.005692 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.349535 B = 4918.000114 C = 6155.843598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.015 4.015 3 C -0.123 4.123 4 C -0.227 4.227 5 C 0.045 3.955 6 C -0.423 4.423 7 H 0.072 0.928 8 C 0.048 3.952 9 N -0.829 5.829 10 Si 0.962 3.038 11 H -0.254 1.254 12 H -0.276 1.276 13 H -0.262 1.262 14 C 0.171 3.829 15 N -0.477 5.477 16 C 0.044 3.956 17 C 0.081 3.919 18 C -0.098 4.098 19 C 0.064 3.936 20 N -0.559 5.559 21 C 0.024 3.976 22 C 0.020 3.980 23 N -0.491 5.491 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.140 0.860 28 H 0.111 0.889 29 H 0.296 0.704 30 H 0.028 0.972 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.028 0.972 39 H 0.025 0.975 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.459 -7.886 -5.261 11.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.153 4.153 3 C -0.142 4.142 4 C -0.253 4.253 5 C 0.039 3.961 6 C -0.452 4.452 7 H 0.090 0.910 8 C -0.169 4.169 9 N -0.454 5.454 10 Si 0.787 3.213 11 H -0.179 1.179 12 H -0.203 1.203 13 H -0.186 1.186 14 C -0.063 4.063 15 N -0.198 5.198 16 C -0.103 4.103 17 C -0.047 4.047 18 C -0.136 4.136 19 C -0.064 4.064 20 N -0.283 5.283 21 C -0.124 4.124 22 C -0.128 4.128 23 N -0.203 5.203 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.158 0.842 28 H 0.129 0.871 29 H 0.107 0.893 30 H 0.046 0.954 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.158 -8.729 -4.822 11.721 hybrid contribution 0.036 1.736 -0.947 1.978 sum -6.121 -6.994 -5.769 10.939 Atomic orbital electron populations 1.20357 0.87849 1.02457 1.02007 1.20945 0.97174 0.87659 1.09561 1.21731 0.93941 0.99197 0.99377 1.21470 0.95100 0.96825 1.11931 1.18411 0.94302 0.91498 0.91937 1.19289 0.90110 1.02964 1.32800 0.90966 1.26864 0.95169 0.98442 0.96412 1.69721 1.09818 1.29825 1.36056 0.85561 0.78582 0.78552 0.78647 1.17906 1.20288 1.18613 1.19561 0.86440 0.90764 1.09515 1.59424 1.55826 1.01327 1.03270 1.22258 0.99045 0.97914 0.91120 1.21849 0.97080 0.94048 0.91685 1.21443 0.99246 0.94299 0.98598 1.21995 0.97488 0.90524 0.96439 1.61991 1.02964 1.15702 1.47612 1.22438 1.01797 0.96220 0.91932 1.22458 0.89222 1.01299 0.99792 1.67004 1.10720 1.31160 1.11445 0.91516 0.92339 0.90136 0.84201 0.87110 0.89293 0.95377 0.89700 0.93727 0.94635 0.93735 0.92387 0.90844 0.90132 0.95406 0.95653 0.90128 0.90741 0.91901 0.89948 0.95861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.10 10.15 71.23 0.72 -1.38 16 2 C -0.01 -0.61 6.79 42.64 0.29 -0.32 16 3 C -0.12 -5.07 9.69 22.32 0.22 -4.85 16 4 C -0.23 -10.75 7.23 22.89 0.17 -10.59 16 5 C 0.04 2.32 5.22 -21.07 -0.11 2.21 16 6 C -0.42 -23.29 9.22 23.36 0.22 -23.07 16 7 H 0.07 4.33 7.79 -2.91 -0.02 4.31 16 8 C 0.05 2.50 5.44 85.25 0.46 2.96 16 9 N -0.83 -43.90 13.93 21.83 0.30 -43.60 16 10 Si 0.96 41.85 24.43 68.60 1.68 43.53 16 11 H -0.25 -10.26 6.67 99.48 0.66 -9.60 16 12 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 13 H -0.26 -11.95 6.73 99.48 0.67 -11.28 16 14 C 0.17 8.29 5.28 134.05 0.71 8.99 16 15 N -0.48 -20.88 3.95 -725.04 -2.86 -23.74 16 16 C 0.04 1.68 9.08 127.69 1.16 2.84 16 17 C 0.08 3.07 4.69 86.30 0.40 3.48 16 18 C -0.10 -3.05 5.06 30.59 0.15 -2.90 16 19 C 0.06 1.69 4.96 86.30 0.43 2.12 16 20 N -0.56 -13.46 5.02 -948.86 -4.76 -18.22 16 21 C 0.02 0.44 9.57 127.69 1.22 1.67 16 22 C 0.02 0.47 9.32 127.69 1.19 1.66 16 23 N -0.49 -22.38 9.68 -179.57 -1.74 -24.12 16 24 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.08 2.02 8.07 -2.39 -0.02 2.00 16 27 H 0.14 4.64 8.06 -2.91 -0.02 4.62 16 28 H 0.11 5.09 4.30 -2.91 -0.01 5.08 16 29 H 0.30 14.03 8.30 -92.71 -0.77 13.26 16 30 H 0.03 1.04 8.05 -2.38 -0.02 1.02 16 31 H 0.08 2.78 6.61 -2.39 -0.02 2.76 16 32 H 0.04 1.80 8.09 -2.39 -0.02 1.78 16 33 H 0.04 1.33 8.05 -2.39 -0.02 1.31 16 34 H 0.04 1.83 8.05 -2.39 -0.02 1.81 16 35 H 0.06 1.99 6.55 -2.39 -0.02 1.97 16 36 H 0.07 2.22 6.62 -2.39 -0.02 2.21 16 37 H 0.08 1.98 8.06 -2.39 -0.02 1.96 16 38 H 0.03 0.76 8.12 -2.39 -0.02 0.74 16 39 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.08 1.25 8.12 -2.39 -0.02 1.23 16 41 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 42 H 0.06 1.61 6.47 -2.39 -0.02 1.60 16 43 H 0.08 1.57 8.12 -2.39 -0.02 1.55 16 44 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -60.55 347.34 0.73 -59.83 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.88 Total: 23.50 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: 7.23 Total: -17.18 kcal Atomic # 7 Polarization: -100.62 SS G_CDS: -9.06 Total: -109.68 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.68 Total: 43.53 kcal Total: -60.55 0.73 -59.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163597809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.997 kcal (2) G-P(sol) polarization free energy of solvation -60.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds