Wall clock time and date at job start Mon Mar 30 2020 02:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31478 * 119.81547 * 2 1 4 4 C 1.32754 * 121.73002 * 180.02562 * 3 2 1 5 5 N 1.38362 * 119.42786 * 180.02562 * 4 3 2 6 6 C 1.46504 * 119.99468 * 185.00241 * 5 4 3 7 7 C 1.46500 * 120.00319 * 5.00042 * 5 4 3 8 8 C 1.52998 * 109.47131 * 89.99993 * 7 5 4 9 9 C 1.52996 * 109.46929 * 179.97438 * 8 7 5 10 10 N 1.46900 * 109.47056 * 180.02562 * 9 8 7 11 11 C 1.46897 * 111.00213 * 170.00290 * 10 9 8 12 12 C 1.46902 * 110.99955 * 293.95644 * 10 9 8 13 13 C 1.39702 * 121.13602 * 0.02578 * 4 3 2 14 14 C 1.36559 * 119.49641 * 359.95483 * 13 4 3 15 15 C 1.40764 * 119.81468 * 180.02562 * 2 1 3 16 16 C 1.41203 * 120.56907 * 359.70692 * 15 2 1 17 17 H 1.07996 * 119.99826 * 334.87335 * 16 15 2 18 18 C 1.39873 * 119.99948 * 154.87638 * 16 15 2 19 19 N 1.30906 * 119.99751 * 344.00717 * 18 16 15 20 20 Si 1.86797 * 120.00021 * 164.00571 * 18 16 15 21 21 H 1.48493 * 109.46901 * 89.99810 * 20 18 16 22 22 H 1.48498 * 109.47146 * 210.00164 * 20 18 16 23 23 H 1.48509 * 109.46885 * 330.00149 * 20 18 16 24 24 H 1.09003 * 109.47736 * 269.97640 * 1 2 3 25 25 H 1.09001 * 109.47456 * 29.98099 * 1 2 3 26 26 H 1.09002 * 109.47551 * 149.97606 * 1 2 3 27 27 H 1.09004 * 109.47177 * 90.00399 * 6 5 4 28 28 H 1.09010 * 109.46571 * 209.99693 * 6 5 4 29 29 H 1.08992 * 109.47064 * 329.99597 * 6 5 4 30 30 H 1.09004 * 109.47084 * 210.00330 * 7 5 4 31 31 H 1.09001 * 109.46930 * 329.99809 * 7 5 4 32 32 H 1.08992 * 109.46981 * 300.00217 * 8 7 5 33 33 H 1.09002 * 109.46699 * 60.00429 * 8 7 5 34 34 H 1.09002 * 109.47417 * 299.99802 * 9 8 7 35 35 H 1.08995 * 109.47179 * 60.00328 * 9 8 7 36 36 H 1.08992 * 109.47381 * 59.99817 * 11 10 9 37 37 H 1.09006 * 109.47075 * 180.02562 * 11 10 9 38 38 H 1.09004 * 109.46947 * 299.99799 * 11 10 9 39 39 H 1.08994 * 109.47293 * 60.00041 * 12 10 9 40 40 H 1.09006 * 109.47252 * 179.97438 * 12 10 9 41 41 H 1.09001 * 109.46823 * 299.99764 * 12 10 9 42 42 H 1.08005 * 120.25370 * 179.97438 * 13 4 3 43 43 H 1.08002 * 120.79436 * 180.02562 * 14 13 4 44 44 H 0.96996 * 119.99679 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1607 1.1407 0.0000 4 6 3.4875 1.1851 -0.0005 5 7 4.1266 2.4122 0.0001 6 6 5.5860 2.4780 -0.1111 7 6 3.3442 3.6457 0.1118 8 6 3.1839 4.0161 1.5876 9 6 2.3673 5.3046 1.7042 10 7 2.2139 5.6606 3.1211 11 6 1.6446 7.0069 3.2671 12 6 1.3982 4.6646 3.8288 13 6 4.2494 0.0141 -0.0016 14 6 3.6198 -1.1977 -0.0012 15 6 2.2068 -1.2213 -0.0005 16 6 1.5090 -2.4489 0.0051 17 1 0.5078 -2.4990 0.4068 18 6 2.1146 -3.5999 -0.5095 19 7 3.1757 -3.4974 -1.2692 20 14 1.4092 -5.2834 -0.1125 21 1 0.4036 -5.6536 -1.1405 22 1 2.5021 -6.2887 -0.1045 23 1 0.7611 -5.2462 1.2232 24 1 -0.3635 -0.0004 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 5.8680 2.5364 -1.1624 28 1 5.9508 3.3617 0.4126 29 1 6.0248 1.5850 0.3338 30 1 3.8594 4.4515 -0.4112 31 1 2.3610 3.4939 -0.3336 32 1 2.6687 3.2104 2.1104 33 1 4.1671 4.1680 2.0329 34 1 2.8829 6.1102 1.1814 35 1 1.3841 5.1532 1.2588 36 1 0.6651 7.0409 2.7902 37 1 1.5422 7.2452 4.3258 38 1 2.3047 7.7337 2.7937 39 1 1.8791 3.6887 3.7637 40 1 1.3009 4.9522 4.8757 41 1 0.4098 4.6138 3.3722 42 1 5.3281 0.0668 -0.0024 43 1 4.1882 -2.1161 -0.0016 44 1 3.5958 -4.2956 -1.6257 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163598384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:37 Heat of formation + Delta-G solvation = 37.635199 kcal Electronic energy + Delta-G solvation = -21672.012324 eV Core-core repulsion = 18624.151812 eV Total energy + Delta-G solvation = -3047.860511 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.83675 -37.69350 -35.99980 -33.67225 -32.19639 -30.80094 -30.22013 -27.62530 -27.29740 -26.34142 -25.65085 -23.78327 -22.25078 -20.78785 -20.26361 -19.81186 -17.14120 -16.35489 -15.79275 -15.28428 -15.25565 -14.94737 -14.58506 -13.92486 -13.86318 -13.60151 -13.26895 -12.82254 -12.79517 -12.42352 -12.09696 -11.93926 -11.81455 -11.67205 -11.57319 -11.42796 -11.37056 -11.20721 -11.15046 -11.04342 -10.91159 -10.78956 -10.50685 -10.18455 -9.65984 -9.29851 -8.43117 -8.37845 -8.08535 -7.91266 -6.74953 -6.49762 -4.14515 2.75988 2.99970 3.09692 3.14322 3.31214 3.82577 3.97559 4.10205 4.72262 5.03754 5.12748 5.25462 5.36877 5.49578 5.57123 5.61215 5.67783 5.68191 5.72064 5.73505 5.81527 5.95309 5.97835 6.09919 6.11746 6.18127 6.39939 6.41418 6.53570 6.66130 6.69260 6.71438 6.84344 7.01115 7.04526 7.07442 7.22520 7.43776 7.50547 7.73041 7.94145 8.22775 8.42392 8.65747 8.88066 8.94238 9.77014 10.26713 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023848 B = 0.004035 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.806270 B = 6937.658882 C = 7700.736077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.034 3.966 3 N -0.515 5.515 4 C 0.286 3.714 5 N -0.627 5.627 6 C 0.111 3.889 7 C 0.145 3.855 8 C -0.128 4.128 9 C 0.058 3.942 10 N -0.549 5.549 11 C 0.025 3.975 12 C 0.022 3.978 13 C -0.208 4.208 14 C -0.091 4.091 15 C 0.035 3.965 16 C -0.454 4.454 17 H 0.079 0.921 18 C 0.073 3.927 19 N -0.807 5.807 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.262 1.262 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.067 0.933 27 H 0.033 0.967 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.035 0.965 36 H 0.023 0.977 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.026 0.974 42 H 0.099 0.901 43 H 0.127 0.873 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.365 11.879 4.660 12.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 N -0.231 5.231 4 C 0.055 3.945 5 N -0.348 5.348 6 C -0.033 4.033 7 C 0.020 3.980 8 C -0.168 4.168 9 C -0.070 4.070 10 N -0.273 5.273 11 C -0.124 4.124 12 C -0.126 4.126 13 C -0.232 4.232 14 C -0.118 4.118 15 C 0.030 3.970 16 C -0.485 4.485 17 H 0.097 0.903 18 C -0.143 4.143 19 N -0.434 5.434 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.186 1.186 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.117 0.883 43 H 0.144 0.856 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.572 12.577 4.722 13.446 hybrid contribution -0.428 -1.622 -0.272 1.700 sum 0.144 10.955 4.449 11.825 Atomic orbital electron populations 1.20229 0.91329 1.00974 1.00104 1.20727 0.94616 0.87483 1.07616 1.66312 1.07283 1.30941 1.18529 1.17650 0.88374 0.84377 1.04143 1.45415 1.03859 1.02473 1.83038 1.21359 0.80937 1.01374 0.99651 1.20940 0.97012 0.85704 0.94331 1.22008 0.99985 0.96062 0.98759 1.22094 0.99148 0.98130 0.87631 1.62010 1.49923 1.02332 1.13028 1.22364 0.97650 0.90684 1.01679 1.22424 0.95360 0.96656 0.98164 1.20858 0.98341 0.92822 1.11169 1.21278 0.94896 0.96102 0.99527 1.18153 0.92177 0.93069 0.93635 1.19330 1.01617 0.91978 1.35558 0.90295 1.25855 0.94417 1.01198 0.92781 1.69819 1.18509 1.31305 1.23764 0.86356 0.79322 0.81237 0.80051 1.19634 1.20296 1.18577 0.93564 0.93569 0.91422 0.94854 0.92825 0.91879 0.93065 0.90400 0.91406 0.92098 0.91237 0.94660 0.95836 0.91659 0.91584 0.90727 0.91847 0.95582 0.88314 0.85566 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 9.57 36.00 0.34 -1.12 16 2 C 0.03 0.85 6.86 -81.79 -0.56 0.29 16 3 N -0.52 -12.43 8.94 -8.05 -0.07 -12.51 16 4 C 0.29 6.56 7.37 -155.12 -1.14 5.42 16 5 N -0.63 -11.80 2.97 -181.64 -0.54 -12.34 16 6 C 0.11 1.69 10.26 59.85 0.61 2.31 16 7 C 0.15 2.36 5.46 -4.04 -0.02 2.34 16 8 C -0.13 -1.93 5.46 -26.73 -0.15 -2.07 16 9 C 0.06 0.75 4.96 -3.83 -0.02 0.73 16 10 N -0.55 -6.86 5.02 -251.26 -1.26 -8.12 16 11 C 0.02 0.24 9.57 60.06 0.57 0.82 16 12 C 0.02 0.27 9.32 60.07 0.56 0.83 16 13 C -0.21 -4.91 9.19 -39.64 -0.36 -5.27 16 14 C -0.09 -2.37 8.74 -39.02 -0.34 -2.71 16 15 C 0.03 0.92 5.58 -106.65 -0.59 0.32 16 16 C -0.45 -11.82 8.14 -37.85 -0.31 -12.12 16 17 H 0.08 1.96 6.87 -52.49 -0.36 1.60 16 18 C 0.07 1.83 5.19 -17.33 -0.09 1.74 16 19 N -0.81 -20.82 10.94 55.54 0.61 -20.21 16 20 Si 0.91 18.64 29.59 -169.99 -5.03 13.61 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 24 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.07 1.43 6.77 -51.93 -0.35 1.07 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.68 8.07 -51.92 -0.42 0.26 16 29 H 0.06 0.97 5.93 -51.93 -0.31 0.66 16 30 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 31 H 0.08 1.42 7.27 -51.93 -0.38 1.04 16 32 H 0.07 1.20 6.55 -51.93 -0.34 0.86 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 35 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 36 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 38 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 39 H 0.07 1.02 6.47 -51.93 -0.34 0.69 16 40 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 41 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.10 2.07 5.97 -52.48 -0.31 1.76 16 43 H 0.13 3.35 6.25 -52.49 -0.33 3.02 16 44 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -28.51 350.37 -9.84 -38.35 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.33 Total: 4.44 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -1.50 Total: -8.50 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -1.27 Total: -53.18 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.51 -9.84 -38.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163598384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.984 kcal (2) G-P(sol) polarization free energy of solvation -28.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds